[INFO] cloning repository https://github.com/natir/fpaf
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/fpaf" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffpaf"`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffpaf'...
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] f66ec39d5c32ba32ba51d86e3a6596c6fd02825a
[INFO] checking natir/fpaf against try#ea663bba38739867a4b75ac820991b4f5d093c3b for pr-62262-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffpaf" "/workspace/builds/worker-1/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/natir/fpaf on toolchain ea663bba38739867a4b75ac820991b4f5d093c3b
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/natir/fpaf
[INFO] finished tweaking git repo https://github.com/natir/fpaf
[INFO] tweaked toml for git repo https://github.com/natir/fpaf written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/natir/fpaf already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 27d438ff0196896256cda3d2e015a45ecf93395a73063ce7642fe7774840df2c
[INFO] running `"docker" "start" "-a" "27d438ff0196896256cda3d2e015a45ecf93395a73063ce7642fe7774840df2c"`
[INFO] [stderr]    Compiling filetime v0.2.1
[INFO] [stderr]    Compiling proc-macro2 v0.4.19
[INFO] [stderr]     Checking csv-core v0.1.4
[INFO] [stderr]     Checking flate2 v1.0.3
[INFO] [stderr]    Compiling lzma-sys v0.1.10
[INFO] [stderr]     Checking csv v1.0.2
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling syn v0.15.8
[INFO] [stderr]     Checking xz2 v0.1.5
[INFO] [stderr]    Compiling serde_derive v1.0.79
[INFO] [stderr]     Checking fpa_lr v0.5.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io/gfa/gfa1.rs:67:42
[INFO] [stderr]    |
[INFO] [stderr] 67 |     pub fn add(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io/gfa/gfa1.rs:77:50
[INFO] [stderr]    |
[INFO] [stderr] 77 |     fn add_containment(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]    |                                                  ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/io/gfa/gfa1.rs:165:52
[INFO] [stderr]     |
[INFO] [stderr] 165 |     fn add_internalmatch(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]     |                                                    ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/io/gfa/gfa1.rs:171:48
[INFO] [stderr]     |
[INFO] [stderr] 171 |     fn add_dovetails(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]     |                                                ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:30:22
[INFO] [stderr]    |
[INFO] [stderr] 30 |     filters: Vec<Box<filter::Filter>>,
[INFO] [stderr]    |                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:51:24
[INFO] [stderr]    |
[INFO] [stderr] 51 |     fn pass(&self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:63:37
[INFO] [stderr]    |
[INFO] [stderr] 63 |     fn add_filter(&mut self, f: Box<filter::Filter>) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:30:22
[INFO] [stderr]    |
[INFO] [stderr] 30 |     filters: Vec<Box<filter::Filter>>,
[INFO] [stderr]    |                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:51:24
[INFO] [stderr]    |
[INFO] [stderr] 51 |     fn pass(&self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:63:37
[INFO] [stderr]    |
[INFO] [stderr] 63 |     fn add_filter(&mut self, f: Box<filter::Filter>) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:28:24
[INFO] [stderr]    |
[INFO] [stderr] 28 |     modifiers: Vec<Box<generator::Modifier>>,
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn generator::Modifier`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:33:36
[INFO] [stderr]    |
[INFO] [stderr] 33 |         let mut modifiers: Vec<Box<generator::Modifier>> = Vec::new();
[INFO] [stderr]    |                                    ^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn generator::Modifier`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:61:36
[INFO] [stderr]    |
[INFO] [stderr] 61 |     pub fn pass(&mut self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                    ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli/mod.rs:128:24
[INFO] [stderr]     |
[INFO] [stderr] 128 |     fn pass(&self, r: &io::MappingRecord) -> bool;
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli/mod.rs:132:37
[INFO] [stderr]     |
[INFO] [stderr] 132 |     fn add_filter(&mut self, f: Box<filter::Filter>);
[INFO] [stderr]     |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:45:44
[INFO] [stderr]    |
[INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box<io::Read>, CompressionFormat) {
[INFO] [stderr]    |                                            ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:54:52
[INFO] [stderr]    |
[INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box<io::Read>, CompressionFormat) {
[INFO] [stderr]    |                                                    ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:78:46
[INFO] [stderr]    |
[INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box<io::Read> {
[INFO] [stderr]    |                                              ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:88:39
[INFO] [stderr]    |
[INFO] [stderr] 88 | fn get_compression(mut in_stream: Box<io::Read>) -> CompressionFormat {
[INFO] [stderr]    |                                       ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/file.rs:117:72
[INFO] [stderr]     |
[INFO] [stderr] 117 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box<io::Write> {
[INFO] [stderr]     |                                                                        ^^^^^^^^^ help: use `dyn`: `dyn io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/file.rs:151:43
[INFO] [stderr]     |
[INFO] [stderr] 151 | fn get_writable(output_name: &str) -> Box<io::Write> {
[INFO] [stderr]     |                                           ^^^^^^^^^ help: use `dyn`: `dyn io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/mod.rs:27:29
[INFO] [stderr]    |
[INFO] [stderr] 27 |     fn run(self: &Self, r: &io::MappingRecord) -> bool;
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/length.rs:45:29
[INFO] [stderr]    |
[INFO] [stderr] 45 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/dovetails.rs:43:29
[INFO] [stderr]    |
[INFO] [stderr] 43 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/containment.rs:43:29
[INFO] [stderr]    |
[INFO] [stderr] 43 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/internalmatch.rs:44:29
[INFO] [stderr]    |
[INFO] [stderr] 44 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/samename.rs:40:29
[INFO] [stderr]    |
[INFO] [stderr] 40 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/namematch.rs:46:29
[INFO] [stderr]    |
[INFO] [stderr] 46 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/sequence_length.rs:45:29
[INFO] [stderr]    |
[INFO] [stderr] 45 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/mod.rs:27:37
[INFO] [stderr]    |
[INFO] [stderr] 27 |     fn run(self: &mut Self, r: &mut io::MappingRecord);
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/renaming.rs:78:39
[INFO] [stderr]    |
[INFO] [stderr] 78 |     fn run_index(self: &Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/renaming.rs:90:46
[INFO] [stderr]    |
[INFO] [stderr] 90 |     fn run_no_index(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                              ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/generator/renaming.rs:109:37
[INFO] [stderr]     |
[INFO] [stderr] 109 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]     |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:58:42
[INFO] [stderr]    |
[INFO] [stderr] 58 |     fn run_both(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:67:43
[INFO] [stderr]    |
[INFO] [stderr] 67 |     fn run_query(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                           ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:71:44
[INFO] [stderr]    |
[INFO] [stderr] 71 |     fn run_target(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                            ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:77:37
[INFO] [stderr]    |
[INFO] [stderr] 77 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/gfa.rs:47:37
[INFO] [stderr]    |
[INFO] [stderr] 47 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:83:40
[INFO] [stderr]    |
[INFO] [stderr] 83 |     let output: std::io::BufWriter<Box<std::io::Write>> =
[INFO] [stderr]    |                                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:94:23
[INFO] [stderr]    |
[INFO] [stderr] 94 | fn paf<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]    |                       ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:94:70
[INFO] [stderr]    |
[INFO] [stderr] 94 | fn paf<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]    |                                                                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/main.rs:140:22
[INFO] [stderr]     |
[INFO] [stderr] 140 | fn m4<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]     |                      ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/main.rs:140:69
[INFO] [stderr]     |
[INFO] [stderr] 140 | fn m4<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]     |                                                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io/gfa/gfa1.rs:67:42
[INFO] [stderr]    |
[INFO] [stderr] 67 |     pub fn add(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/io/gfa/gfa1.rs:77:50
[INFO] [stderr]    |
[INFO] [stderr] 77 |     fn add_containment(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]    |                                                  ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/io/gfa/gfa1.rs:165:52
[INFO] [stderr]     |
[INFO] [stderr] 165 |     fn add_internalmatch(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]     |                                                    ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/io/gfa/gfa1.rs:171:48
[INFO] [stderr]     |
[INFO] [stderr] 171 |     fn add_dovetails(self: &mut Self, record: &io::MappingRecord) {
[INFO] [stderr]     |                                                ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:30:22
[INFO] [stderr]    |
[INFO] [stderr] 30 |     filters: Vec<Box<filter::Filter>>,
[INFO] [stderr]    |                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:51:24
[INFO] [stderr]    |
[INFO] [stderr] 51 |     fn pass(&self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/drop.rs:63:37
[INFO] [stderr]    |
[INFO] [stderr] 63 |     fn add_filter(&mut self, f: Box<filter::Filter>) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:30:22
[INFO] [stderr]    |
[INFO] [stderr] 30 |     filters: Vec<Box<filter::Filter>>,
[INFO] [stderr]    |                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:51:24
[INFO] [stderr]    |
[INFO] [stderr] 51 |     fn pass(&self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/keep.rs:63:37
[INFO] [stderr]    |
[INFO] [stderr] 63 |     fn add_filter(&mut self, f: Box<filter::Filter>) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:28:24
[INFO] [stderr]    |
[INFO] [stderr] 28 |     modifiers: Vec<Box<generator::Modifier>>,
[INFO] [stderr]    |                        ^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn generator::Modifier`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:33:36
[INFO] [stderr]    |
[INFO] [stderr] 33 |         let mut modifiers: Vec<Box<generator::Modifier>> = Vec::new();
[INFO] [stderr]    |                                    ^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn generator::Modifier`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/cli/modifier.rs:61:36
[INFO] [stderr]    |
[INFO] [stderr] 61 |     pub fn pass(&mut self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                    ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli/mod.rs:128:24
[INFO] [stderr]     |
[INFO] [stderr] 128 |     fn pass(&self, r: &io::MappingRecord) -> bool;
[INFO] [stderr]     |                        ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/cli/mod.rs:132:37
[INFO] [stderr]     |
[INFO] [stderr] 132 |     fn add_filter(&mut self, f: Box<filter::Filter>);
[INFO] [stderr]     |                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn filter::Filter`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:45:44
[INFO] [stderr]    |
[INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box<io::Read>, CompressionFormat) {
[INFO] [stderr]    |                                            ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:54:52
[INFO] [stderr]    |
[INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box<io::Read>, CompressionFormat) {
[INFO] [stderr]    |                                                    ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:78:46
[INFO] [stderr]    |
[INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box<io::Read> {
[INFO] [stderr]    |                                              ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/file.rs:88:39
[INFO] [stderr]    |
[INFO] [stderr] 88 | fn get_compression(mut in_stream: Box<io::Read>) -> CompressionFormat {
[INFO] [stderr]    |                                       ^^^^^^^^ help: use `dyn`: `dyn io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/file.rs:117:72
[INFO] [stderr]     |
[INFO] [stderr] 117 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box<io::Write> {
[INFO] [stderr]     |                                                                        ^^^^^^^^^ help: use `dyn`: `dyn io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/file.rs:151:43
[INFO] [stderr]     |
[INFO] [stderr] 151 | fn get_writable(output_name: &str) -> Box<io::Write> {
[INFO] [stderr]     |                                           ^^^^^^^^^ help: use `dyn`: `dyn io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/mod.rs:27:29
[INFO] [stderr]    |
[INFO] [stderr] 27 |     fn run(self: &Self, r: &io::MappingRecord) -> bool;
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/length.rs:45:29
[INFO] [stderr]    |
[INFO] [stderr] 45 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/dovetails.rs:43:29
[INFO] [stderr]    |
[INFO] [stderr] 43 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/containment.rs:43:29
[INFO] [stderr]    |
[INFO] [stderr] 43 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/internalmatch.rs:44:29
[INFO] [stderr]    |
[INFO] [stderr] 44 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/samename.rs:40:29
[INFO] [stderr]    |
[INFO] [stderr] 40 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/namematch.rs:46:29
[INFO] [stderr]    |
[INFO] [stderr] 46 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/filter/sequence_length.rs:45:29
[INFO] [stderr]    |
[INFO] [stderr] 45 |     fn run(self: &Self, r: &io::MappingRecord) -> bool {
[INFO] [stderr]    |                             ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/mod.rs:27:37
[INFO] [stderr]    |
[INFO] [stderr] 27 |     fn run(self: &mut Self, r: &mut io::MappingRecord);
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/renaming.rs:78:39
[INFO] [stderr]    |
[INFO] [stderr] 78 |     fn run_index(self: &Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                       ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/renaming.rs:90:46
[INFO] [stderr]    |
[INFO] [stderr] 90 |     fn run_no_index(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                              ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/generator/renaming.rs:109:37
[INFO] [stderr]     |
[INFO] [stderr] 109 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]     |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:58:42
[INFO] [stderr]    |
[INFO] [stderr] 58 |     fn run_both(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                          ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:67:43
[INFO] [stderr]    |
[INFO] [stderr] 67 |     fn run_query(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                           ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:71:44
[INFO] [stderr]    |
[INFO] [stderr] 71 |     fn run_target(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                            ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/indexing.rs:77:37
[INFO] [stderr]    |
[INFO] [stderr] 77 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/generator/gfa.rs:47:37
[INFO] [stderr]    |
[INFO] [stderr] 47 |     fn run(self: &mut Self, r: &mut io::MappingRecord) {
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn io::MappingRecord`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:83:40
[INFO] [stderr]    |
[INFO] [stderr] 83 |     let output: std::io::BufWriter<Box<std::io::Write>> =
[INFO] [stderr]    |                                        ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:94:23
[INFO] [stderr]    |
[INFO] [stderr] 94 | fn paf<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]    |                       ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]   --> src/main.rs:94:70
[INFO] [stderr]    |
[INFO] [stderr] 94 | fn paf<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]    |                                                                      ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/main.rs:140:22
[INFO] [stderr]     |
[INFO] [stderr] 140 | fn m4<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]     |                      ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read`
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/main.rs:140:69
[INFO] [stderr]     |
[INFO] [stderr] 140 | fn m4<'a>(input: Box<std::io::Read>, output: std::io::BufWriter<Box<std::io::Write>>, internal_match_threshold: f64, subcmd: std::collections::HashMap<String, clap::ArgMatches<'a>>) -> () {
[INFO] [stderr]     |                                                                     ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/cli/modifier.rs:62:13
[INFO] [stderr]    |
[INFO] [stderr] 62 |         for mut m in self.modifiers.iter_mut() {
[INFO] [stderr]    |             ----^
[INFO] [stderr]    |             |
[INFO] [stderr]    |             help: remove this `mut`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/cli/modifier.rs:62:13
[INFO] [stderr]    |
[INFO] [stderr] 62 |         for mut m in self.modifiers.iter_mut() {
[INFO] [stderr]    |             ----^
[INFO] [stderr]    |             |
[INFO] [stderr]    |             help: remove this `mut`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 35.26s
[INFO] running `"docker" "inspect" "27d438ff0196896256cda3d2e015a45ecf93395a73063ce7642fe7774840df2c"`
[INFO] running `"docker" "rm" "-f" "27d438ff0196896256cda3d2e015a45ecf93395a73063ce7642fe7774840df2c"`
[INFO] [stdout] 27d438ff0196896256cda3d2e015a45ecf93395a73063ce7642fe7774840df2c