[INFO] updating cached repository https://github.com/legaultmarc/genepa-rs
[INFO] running `"git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "-c" "remote.origin.fetch=refs/heads/*:refs/heads/*" "fetch" "origin" "--force" "--prune"`
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 4ee2025b9265ff8ae4ea21980678cb8a011f421e
[INFO] checking legaultmarc/genepa-rs against try#ea663bba38739867a4b75ac820991b4f5d093c3b for pr-62262-1
[INFO] running `"git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flegaultmarc%2Fgenepa-rs" "/workspace/builds/worker-1/source"`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/legaultmarc/genepa-rs on toolchain ea663bba38739867a4b75ac820991b4f5d093c3b
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] finished tweaking git repo https://github.com/legaultmarc/genepa-rs
[INFO] tweaked toml for git repo https://github.com/legaultmarc/genepa-rs written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate git repo https://github.com/legaultmarc/genepa-rs already has a lockfile, it will not be regenerated
[INFO] running `"/workspace/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+ea663bba38739867a4b75ac820991b4f5d093c3b" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 6719505c8a60d772608f8ef3a061c1276c45bd7a5b41039419072bb1f1b1e03c
[INFO] running `"docker" "start" "-a" "6719505c8a60d772608f8ef3a061c1276c45bd7a5b41039419072bb1f1b1e03c"`
[INFO] [stderr]     Checking ndarray v0.12.1
[INFO] [stderr]     Checking genepa_rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused import: `std::f32::NAN`
[INFO] [stderr]  --> src/c_api.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::f32::NAN;
[INFO] [stderr]   |     ^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] error: couldn't read src/../test_data/common_extracted_1kg.missing.bed: No such file or directory (os error 2)
[INFO] [stderr]    --> src/plink.rs:386:19
[INFO] [stderr]     |
[INFO] [stderr] 386 |           let bed = include_bytes!(
[INFO] [stderr]     |  ___________________^
[INFO] [stderr] 387 | |             "../test_data/common_extracted_1kg.missing.bed"
[INFO] [stderr] 388 | |         );
[INFO] [stderr]     | |_________^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::f32::NAN`
[INFO] [stderr]  --> src/c_api.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::f32::NAN;
[INFO] [stderr]   |     ^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `geno_arr_others`
[INFO] [stderr]   --> src/utils.rs:20:9
[INFO] [stderr]    |
[INFO] [stderr] 20 |     let geno_arr_others = ArrayViewMut::from_shape(
[INFO] [stderr]    |         ^^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_geno_arr_others`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `r2`
[INFO] [stderr]  --> src/utils.rs:5:74
[INFO] [stderr]   |
[INFO] [stderr] 5 | pub fn compute_ld(mut g: Genotypes, mut other_genotypes: Vec<Genotypes>, r2: bool)
[INFO] [stderr]   |                                                                          ^^ help: consider prefixing with an underscore: `_r2`
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to previous error
[INFO] [stderr] 
[INFO] [stderr] error: could not compile `genepa_rs`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "6719505c8a60d772608f8ef3a061c1276c45bd7a5b41039419072bb1f1b1e03c"`
[INFO] running `"docker" "rm" "-f" "6719505c8a60d772608f8ef3a061c1276c45bd7a5b41039419072bb1f1b1e03c"`
[INFO] [stdout] 6719505c8a60d772608f8ef3a061c1276c45bd7a5b41039419072bb1f1b1e03c