[INFO] fetching crate chemfiles-sys 0.9.1... [INFO] checking chemfiles-sys-0.9.1 against master#2748a9fd93dd1a00a4521f4f16de5befbf77f6cd for pr-62262-1 [INFO] extracting crate chemfiles-sys 0.9.1 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate chemfiles-sys 0.9.1 on toolchain 2748a9fd93dd1a00a4521f4f16de5befbf77f6cd [INFO] running `"/workspace/cargo-home/bin/cargo" "+2748a9fd93dd1a00a4521f4f16de5befbf77f6cd" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started tweaking crates.io crate chemfiles-sys 0.9.1 [INFO] finished tweaking crates.io crate chemfiles-sys 0.9.1 [INFO] tweaked toml for crates.io crate chemfiles-sys 0.9.1 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `"/workspace/cargo-home/bin/cargo" "+2748a9fd93dd1a00a4521f4f16de5befbf77f6cd" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/workspace/cargo-home/bin/cargo" "+2748a9fd93dd1a00a4521f4f16de5befbf77f6cd" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=0" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+2748a9fd93dd1a00a4521f4f16de5befbf77f6cd" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 2448dc75c668f72951724a5caeea6be7dc29e6d8bbd4e4069c704203e23cda8c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `"docker" "start" "-a" "2448dc75c668f72951724a5caeea6be7dc29e6d8bbd4e4069c704203e23cda8c"` [INFO] [stderr] Compiling chemfiles-sys v0.9.1 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `chemfiles-sys v0.9.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/chemfiles-sys-34840416d3cd0dc6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/." "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/chemfiles-sys-0d3d1945d2605807/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 7.4.0 [INFO] [stderr] -- The CXX compiler identification is GNU 7.4.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Unpacking fmt sources [INFO] [stderr] -- Unpacking toml11 sources [INFO] [stderr] -- Unpacking netcdf sources [INFO] [stderr] -- Unpacking tng sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Unpacking molfiles sources [INFO] [stderr] -- Unpacking mmtf-cpp sources [INFO] [stderr] -- Unpacking zlib sources [INFO] [stderr] -- Unpacking lzma sources [INFO] [stderr] -- Check if the system is big endian [INFO] [stderr] -- Searching 16 bit integer [INFO] [stderr] -- Using unsigned short [INFO] [stderr] -- Check if the system is big endian - little endian [INFO] [stderr] -- Configuring done [INFO] [stderr] -- Generating done [INFO] [stderr] -- Build files have been written to: /opt/rustwide/target/debug/build/chemfiles-sys-0d3d1945d2605807/out/build [INFO] [stderr] running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" [INFO] [stderr] Scanning dependencies of target fmt [INFO] [stderr] Scanning dependencies of target molfiles [INFO] [stderr] Scanning dependencies of target netcdf [INFO] [stderr] [ 1%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o [INFO] [stderr] Scanning dependencies of target tng_io [INFO] [stderr] [ 1%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3dispatch.c.o [INFO] [stderr] [ 2%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc_hashmap.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o [INFO] [stderr] [ 3%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/attr.c.o [INFO] [stderr] [ 3%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o [INFO] [stderr] [ 4%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/posix.cc.o [INFO] [stderr] Scanning dependencies of target zlib [INFO] [stderr] [ 4%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/lookup3.c.o [INFO] [stderr] [ 5%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/dim.c.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwlzh.c.o [INFO] [stderr] [ 6%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/moldenplugin.c.o [INFO] [stderr] [ 6%] Building CXX object chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o [INFO] [stderr] [ 7%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/adler32.o [INFO] [stderr] Scanning dependencies of target lzma [INFO] [stderr] [ 7%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/check.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/nc3internal.c.o [INFO] [stderr] [ 8%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/ncio.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/ncx.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/putget.c.o [INFO] [stderr] [ 9%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/compress.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/bwt.c.o [INFO] [stderr] [ 10%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/var.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/v1hpg.c.o [INFO] [stderr] [ 11%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_fast.c.o [INFO] [stderr] [ 12%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/crc32.o [INFO] [stderr] Scanning dependencies of target chemfiles_objects [INFO] [stderr] [ 13%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/datt.c.o [INFO] [stderr] [ 13%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattget.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc32_table.c.o [INFO] [stderr] [ 14%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/coder.c.o [INFO] [stderr] [ 15%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/dict.c.o [INFO] [stderr] [ 15%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Atom.cpp.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattinq.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_fast.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dattput.c.o [INFO] [stderr] [ 16%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/deflate.o [INFO] [stderr] [ 17%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dcopy.c.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/crc64_table.c.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/fixpoint.c.o [INFO] [stderr] [ 18%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ddim.c.o [INFO] [stderr] [ 20%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffman.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ddispatch.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/derror.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/check/sha256.c.o [INFO] [stderr] [ 21%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/huffmem.c.o [INFO] [stderr] [ 21%] Built target molfiles [INFO] [stderr] [ 22%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/lz77.c.o [INFO] [stderr] [ 23%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_decoder.c.o [INFO] [stderr] [ 24%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dfile.c.o [INFO] [stderr] [ 25%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dinternal.c.o [INFO] [stderr] [ 25%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/alone_encoder.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dparallel.c.o [INFO] [stderr] [ 26%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/merge_sort.c.o [INFO] [stderr] [ 27%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/mtf.c.o [INFO] [stderr] [ 27%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o [INFO] [stderr] [ 27%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dstring.c.o [INFO] [stderr] [ 28%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/auto_decoder.c.o [INFO] [stderr] [ 29%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dutf8proc.c.o [INFO] [stderr] [ 29%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_decoder.c.o [INFO] [stderr] [ 30%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/tng_compress.c.o [INFO] [stderr] [ 30%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvar.c.o [INFO] [stderr] [ 31%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzclose.o [INFO] [stderr] [ 31%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/vals16.c.o [INFO] [stderr] [ 32%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_buffer_encoder.c.o [INFO] [stderr] [ 33%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/warnmalloc.c.o [INFO] [stderr] [ 34%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarget.c.o [INFO] [stderr] [ 34%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/widemuldiv.c.o [INFO] [stderr] [ 35%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_encoder.c.o [INFO] [stderr] [ 35%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_decoder.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc2.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzlib.o [INFO] [stderr] [ 36%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/xtc3.c.o [INFO] [stderr] [ 36%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_decoder.c.o [INFO] [stderr] [ 37%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_header_encoder.c.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzread.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/block_util.c.o [INFO] [stderr] [ 38%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_buffer_encoder.c.o [INFO] [stderr] [ 40%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/common.c.o [INFO] [stderr] [ 40%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder.c.o [INFO] [stderr] [ 40%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarinq.c.o [INFO] [stderr] [ 41%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/tng_io.c.o [INFO] [stderr] [ 42%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/dvarput.c.o [INFO] [stderr] [ 43%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_decoder_memusage.c.o [INFO] [stderr] [ 43%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/gzwrite.o [INFO] [stderr] [ 44%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_encoder_memusage.c.o [INFO] [stderr] [ 44%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nc.c.o [INFO] [stderr] [ 44%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/easy_preset.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_decoder.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/lib/md5.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_buffer_encoder.c.o [INFO] [stderr] [ 45%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/infback.o [INFO] [stderr] [ 47%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inftrees.o [INFO] [stderr] [ 47%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_common.c.o [INFO] [stderr] [ 48%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inflate.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ncbytes.c.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nchashmap.c.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/inffast.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_decoder.c.o [INFO] [stderr] [ 49%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclist.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_encoder.c.o [INFO] [stderr] [ 50%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_decoder.c.o [INFO] [stderr] [ 51%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclistmgr.c.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/trees.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/uncompr.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/ncuri.c.o [INFO] [stderr] [ 52%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nclog.c.o [INFO] [stderr] [ 53%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/nctime.c.o [INFO] [stderr] [ 54%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libsrc/posixio.c.o [INFO] [stderr] [ 56%] Building C object chemfiles/external/zlib/CMakeFiles/zlib.dir/zutil.o [INFO] [stderr] [ 55%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/filter_flags_encoder.c.o [INFO] [stderr] [ 56%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index.c.o [INFO] [stderr] [ 57%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_decoder.c.o [INFO] [stderr] [ 58%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/File.cpp.o [INFO] [stderr] [ 58%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Format.cpp.o [INFO] [stderr] [ 58%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_encoder.c.o [INFO] [stderr] [ 58%] Built target zlib [INFO] [stderr] [ 60%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o [INFO] [stderr] [ 60%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Frame.cpp.o [INFO] [stderr] [ 60%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_decoder.c.o [INFO] [stderr] [ 61%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/index_hash.c.o [INFO] [stderr] [ 62%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o [INFO] [stderr] [ 63%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_buffer_encoder.c.o [INFO] [stderr] [ 63%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o [INFO] [stderr] [ 63%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_decoder.c.o [INFO] [stderr] [ 64%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o [INFO] [stderr] [ 64%] Built target netcdf [INFO] [stderr] [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_encoder.c.o [INFO] [stderr] [ 65%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_common.c.o [INFO] [stderr] [ 66%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_decoder.c.o [INFO] [stderr] [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_decoder.c.o [INFO] [stderr] [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/stream_flags_encoder.c.o [INFO] [stderr] [ 67%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_common.c.o [INFO] [stderr] [ 68%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_size.c.o [INFO] [stderr] [ 68%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/common/vli_encoder.c.o [INFO] [stderr] [ 69%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_decoder.c.o [INFO] [stderr] [ 69%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Topology.cpp.o [INFO] [stderr] [ 69%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/delta/delta_encoder.c.o [INFO] [stderr] [ 70%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_decoder.c.o [INFO] [stderr] [ 70%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder.c.o [INFO] [stderr] [ 71%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lz/lz_encoder_mf.c.o [INFO] [stderr] [ 71%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/fastpos_table.c.o [INFO] [stderr] [ 72%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_decoder.c.o [INFO] [stderr] [ 72%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma2_encoder.c.o [INFO] [stderr] [ 72%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_decoder.c.o [INFO] [stderr] [ 72%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_fast.c.o [INFO] [stderr] [ 73%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder.c.o [INFO] [stderr] [ 74%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_optimum_normal.c.o [INFO] [stderr] [ 74%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/lzma/lzma_encoder_presets.c.o [INFO] [stderr] [ 74%] Built target tng_io [INFO] [stderr] [ 75%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/rangecoder/price_table.c.o [INFO] [stderr] [ 75%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/arm.c.o [INFO] [stderr] [ 76%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/armthumb.c.o [INFO] [stderr] [ 76%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/ia64.c.o [INFO] [stderr] [ 77%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o [INFO] [stderr] [ 78%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/powerpc.c.o [INFO] [stderr] [ 78%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_coder.c.o [INFO] [stderr] [ 78%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_encoder.c.o [INFO] [stderr] [ 80%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/simple_decoder.c.o [INFO] [stderr] [ 81%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/sparc.c.o [INFO] [stderr] [ 81%] Building C object chemfiles/external/lzma/CMakeFiles/lzma.dir/liblzma/simple/x86.c.o [INFO] [stderr] [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/atom.cpp.o [INFO] [stderr] [ 82%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/frame.cpp.o [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/cell.cpp.o [INFO] [stderr] [ 83%] Built target lzma [INFO] [stderr] [ 83%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/capi/misc.cpp.o [INFO] [stderr] chemfiles/external/fmt/CMakeFiles/fmt.dir/build.make:62: recipe for target 'chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:86: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o' failed [INFO] [stderr] CMakeFiles/Makefile2:253: recipe for target 'chemfiles/external/fmt/CMakeFiles/fmt.dir/all' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:278: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:110: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:230: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:182: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o' failed [INFO] [stderr] chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:326: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o' failed [INFO] [stderr] CMakeFiles/Makefile2:133: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/all' failed [INFO] [stderr] Makefile:129: recipe for target 'all' failed [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/external/fmt/CMakeFiles/fmt.dir/src/format.cc.o] Error 4 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 4 [INFO] [stderr] make[1]: *** [chemfiles/external/fmt/CMakeFiles/fmt.dir/all] Error 2 [INFO] [stderr] make[1]: *** Waiting for unfinished jobs.... [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** Waiting for unfinished jobs.... [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Selection.cpp.o] Error 4 [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Connectivity.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 4 [INFO] [stderr] c++: internal compiler error: Killed (program cc1plus) [INFO] [stderr] Please submit a full bug report, [INFO] [stderr] with preprocessed source if appropriate. [INFO] [stderr] See for instructions. [INFO] [stderr] make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Trajectory.cpp.o] Error 4 [INFO] [stderr] make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 [INFO] [stderr] make: *** [all] Error 2 [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 2 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x564b45b88baa - backtrace::backtrace::libunwind::trace::hef9286fd8c27fd45 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/libunwind.rs:88 [INFO] [stderr] 1: 0x564b45b88baa - backtrace::backtrace::trace_unsynchronized::h92082381ae588065 [INFO] [stderr] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.37/src/backtrace/mod.rs:66 [INFO] [stderr] 2: 0x564b45b88baa - std::sys_common::backtrace::_print_fmt::h00c64aa4e7e3372c [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:77 [INFO] [stderr] 3: 0x564b45b88baa - ::fmt::hc568c1817d410574 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:61 [INFO] [stderr] 4: 0x564b45ba884c - core::fmt::write::he445cb7086c25009 [INFO] [stderr] at src/libcore/fmt/mod.rs:1028 [INFO] [stderr] 5: 0x564b45b85467 - std::io::Write::write_fmt::he0bcb31f8a60d79b [INFO] [stderr] at src/libstd/io/mod.rs:1412 [INFO] [stderr] 6: 0x564b45b8b79e - std::sys_common::backtrace::_print::h45adb36ea9b21f61 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:65 [INFO] [stderr] 7: 0x564b45b8b79e - std::sys_common::backtrace::print::h223c050f40432de9 [INFO] [stderr] at src/libstd/sys_common/backtrace.rs:50 [INFO] [stderr] 8: 0x564b45b8b79e - std::panicking::default_hook::{{closure}}::hf3487b4e375d5982 [INFO] [stderr] at src/libstd/panicking.rs:189 [INFO] [stderr] 9: 0x564b45b8b4a1 - std::panicking::default_hook::h9d095a3a991b35b0 [INFO] [stderr] at src/libstd/panicking.rs:206 [INFO] [stderr] 10: 0x564b45b8be35 - std::panicking::rust_panic_with_hook::h907bb8227c8498d1 [INFO] [stderr] at src/libstd/panicking.rs:469 [INFO] [stderr] 11: 0x564b45b8b9d2 - std::panicking::continue_panic_fmt::h6c8f32a89e529f80 [INFO] [stderr] at src/libstd/panicking.rs:376 [INFO] [stderr] 12: 0x564b45b8b92c - std::panicking::begin_panic_fmt::h990ed10387584135 [INFO] [stderr] at src/libstd/panicking.rs:331 [INFO] [stderr] 13: 0x564b45b13916 - cmake::fail::h5d082632b0fa8af4 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:861 [INFO] [stderr] 14: 0x564b45b131ba - cmake::run::h3e3411faba092492 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:839 [INFO] [stderr] 15: 0x564b45b0f837 - cmake::Config::build::h12cb8313744b5074 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.42/src/lib.rs:745 [INFO] [stderr] 16: 0x564b45b0b48f - build_script_build::build_chemfiles::h063b30aa9f985c9d [INFO] [stderr] at /opt/rustwide/workdir/build.rs:18 [INFO] [stderr] 17: 0x564b45b0b29e - build_script_build::main::hc727a7c4a82cd873 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:8 [INFO] [stderr] 18: 0x564b45b09c60 - std::rt::lang_start::{{closure}}::h8205b6eeddf9d111 [INFO] [stderr] at /rustc/2748a9fd93dd1a00a4521f4f16de5befbf77f6cd/src/libstd/rt.rs:61 [INFO] [stderr] 19: 0x564b45b8b863 - std::rt::lang_start_internal::{{closure}}::h87ac7726b4ada2a9 [INFO] [stderr] at src/libstd/rt.rs:48 [INFO] [stderr] 20: 0x564b45b8b863 - std::panicking::try::do_call::he4d58a26927f0537 [INFO] [stderr] at src/libstd/panicking.rs:288 [INFO] [stderr] 21: 0x564b45b92ada - __rust_maybe_catch_panic [INFO] [stderr] at src/libpanic_unwind/lib.rs:80 [INFO] [stderr] 22: 0x564b45b8c32d - std::panicking::try::hc8ad7011d3baf74d [INFO] [stderr] at src/libstd/panicking.rs:267 [INFO] [stderr] 23: 0x564b45b8c32d - std::panic::catch_unwind::haaf07c0b1c45cbc8 [INFO] [stderr] at src/libstd/panic.rs:394 [INFO] [stderr] 24: 0x564b45b8c32d - std::rt::lang_start_internal::h53afdaeda14f9890 [INFO] [stderr] at src/libstd/rt.rs:47 [INFO] [stderr] 25: 0x564b45b09c39 - std::rt::lang_start::h972a6533eb0032de [INFO] [stderr] at /rustc/2748a9fd93dd1a00a4521f4f16de5befbf77f6cd/src/libstd/rt.rs:61 [INFO] [stderr] 26: 0x564b45b0be1a - main [INFO] [stderr] 27: 0x7fb8fcaccb97 - __libc_start_main [INFO] [stderr] 28: 0x564b45b09b0a - _start [INFO] [stderr] 29: 0x0 - [INFO] [stderr] [INFO] running `"docker" "inspect" "2448dc75c668f72951724a5caeea6be7dc29e6d8bbd4e4069c704203e23cda8c"` [INFO] running `"docker" "rm" "-f" "2448dc75c668f72951724a5caeea6be7dc29e6d8bbd4e4069c704203e23cda8c"` [INFO] [stdout] 2448dc75c668f72951724a5caeea6be7dc29e6d8bbd4e4069c704203e23cda8c