[INFO] updating cached repository wheaton5/het_snp_kmers
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/wheaton5/het_snp_kmers
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/het_snp_kmers" "work/ex/pr-62181/sources/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946/gh/wheaton5/het_snp_kmers"`
[INFO] [stderr] Cloning into 'work/ex/pr-62181/sources/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946/gh/wheaton5/het_snp_kmers'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/het_snp_kmers" "work/ex/pr-62181/sources/try#003a7b6b5753e8509fdfe7949d4f0873ba71e4fc/gh/wheaton5/het_snp_kmers"`
[INFO] [stderr] Cloning into 'work/ex/pr-62181/sources/try#003a7b6b5753e8509fdfe7949d4f0873ba71e4fc/gh/wheaton5/het_snp_kmers'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] d6dc5ee320c4e01a4297da4d6c1fe2db8fc40514
[INFO] sha for GitHub repo wheaton5/het_snp_kmers: d6dc5ee320c4e01a4297da4d6c1fe2db8fc40514
[INFO] validating manifest of wheaton5/het_snp_kmers on toolchain master#6ea4036cd20a4b1ab1d56e555108c21735ff6946
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+6ea4036cd20a4b1ab1d56e555108c21735ff6946-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of wheaton5/het_snp_kmers on toolchain try#003a7b6b5753e8509fdfe7949d4f0873ba71e4fc
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+003a7b6b5753e8509fdfe7949d4f0873ba71e4fc-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing wheaton5/het_snp_kmers
[INFO] finished frobbing wheaton5/het_snp_kmers
[INFO] frobbed toml for wheaton5/het_snp_kmers written to work/ex/pr-62181/sources/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946/gh/wheaton5/het_snp_kmers/Cargo.toml
[INFO] started frobbing wheaton5/het_snp_kmers
[INFO] finished frobbing wheaton5/het_snp_kmers
[INFO] frobbed toml for wheaton5/het_snp_kmers written to work/ex/pr-62181/sources/try#003a7b6b5753e8509fdfe7949d4f0873ba71e4fc/gh/wheaton5/het_snp_kmers/Cargo.toml
[INFO] crate wheaton5/het_snp_kmers already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+6ea4036cd20a4b1ab1d56e555108c21735ff6946-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr] error: the lock file /mnt/big/crater/work/ex/pr-62181/sources/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946/gh/wheaton5/het_snp_kmers/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] the lockfile is outdated, regenerating it
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+6ea4036cd20a4b1ab1d56e555108c21735ff6946-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn.git`
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-boomphf`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+003a7b6b5753e8509fdfe7949d4f0873ba71e4fc-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn.git`
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-boomphf`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+6ea4036cd20a4b1ab1d56e555108c21735ff6946-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+003a7b6b5753e8509fdfe7949d4f0873ba71e4fc-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] checking wheaton5/het_snp_kmers against master#6ea4036cd20a4b1ab1d56e555108c21735ff6946 for pr-62181
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-62181/worker-0/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-62181/sources/master#6ea4036cd20a4b1ab1d56e555108c21735ff6946/gh/wheaton5/het_snp_kmers:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+6ea4036cd20a4b1ab1d56e555108c21735ff6946-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 13d36f219d5607da77423a49ef77dc9b6f8fb30bfe112878999102fa1d6c0291
[INFO] running `"docker" "start" "-a" "13d36f219d5607da77423a49ef77dc9b6f8fb30bfe112878999102fa1d6c0291"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling rustc-demangle v0.1.15
[INFO] [stderr]    Compiling bindgen v0.50.0
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling serde v1.0.94
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking spin v0.4.10
[INFO] [stderr]     Checking bit-vec v0.4.4
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling num-iter v0.1.39
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-rational v0.2.2
[INFO] [stderr]    Compiling log v0.4.6
[INFO] [stderr]    Compiling textwrap v0.9.0
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]     Checking itertools v0.8.0
[INFO] [stderr]     Checking wyhash v0.3.0
[INFO] [stderr]     Checking concurrent-hashmap v0.2.2
[INFO] [stderr]     Checking bit-set v0.4.0
[INFO] [stderr]     Checking bloom v0.3.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling backtrace-sys v0.1.30
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]     Checking clap v2.27.1
[INFO] [stderr]     Checking num-integer v0.1.41
[INFO] [stderr]    Compiling backtrace v0.3.32
[INFO] [stderr]    Compiling env_logger v0.6.2
[INFO] [stderr]     Checking num-bigint v0.2.2
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling which v2.0.1
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]     Checking num v0.2.0
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking boomphf v0.5.2 (https://github.com/10XGenomics/rust-boomphf#864905fa)
[INFO] [stderr]     Checking serde_json v1.0.40
[INFO] [stderr]     Checking debruijn v0.2.1 (https://github.com/10XGenomics/rust-debruijn.git#9eb5d283)
[INFO] [stderr]    Compiling rust-htslib v0.24.0
[INFO] [stderr]     Checking dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#a640f47b)
[INFO] [stderr]     Checking het_snp_kmers v0.1.0 (/opt/crater/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 36s
[INFO] running `"docker" "inspect" "13d36f219d5607da77423a49ef77dc9b6f8fb30bfe112878999102fa1d6c0291"`
[INFO] running `"docker" "rm" "-f" "13d36f219d5607da77423a49ef77dc9b6f8fb30bfe112878999102fa1d6c0291"`
[INFO] [stdout] 13d36f219d5607da77423a49ef77dc9b6f8fb30bfe112878999102fa1d6c0291