[INFO] cloning repository mal2017/csc [INFO] running `"git" "clone" "--bare" "git://github.com/mal2017/csc.git" "work/cache/sources/gh/mal2017/csc"` [INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/mal2017/csc'... [INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/pr-62133/sources/master#5f9c0448dde167128d668da4555879f64e56af1d/gh/mal2017/csc"` [INFO] [stderr] Cloning into 'work/ex/pr-62133/sources/master#5f9c0448dde167128d668da4555879f64e56af1d/gh/mal2017/csc'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/csc" "work/ex/pr-62133/sources/try#8ec8125bea94852768b56958f05da47666c21ab0/gh/mal2017/csc"` [INFO] [stderr] Cloning into 'work/ex/pr-62133/sources/try#8ec8125bea94852768b56958f05da47666c21ab0/gh/mal2017/csc'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 4520455aaa17b25be16d988fdca80cce940a390a [INFO] sha for GitHub repo mal2017/csc: 4520455aaa17b25be16d988fdca80cce940a390a [INFO] validating manifest of mal2017/csc on toolchain master#5f9c0448dde167128d668da4555879f64e56af1d [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+5f9c0448dde167128d668da4555879f64e56af1d-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of mal2017/csc on toolchain try#8ec8125bea94852768b56958f05da47666c21ab0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+8ec8125bea94852768b56958f05da47666c21ab0-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing mal2017/csc [INFO] finished frobbing mal2017/csc [INFO] frobbed toml for mal2017/csc written to work/ex/pr-62133/sources/master#5f9c0448dde167128d668da4555879f64e56af1d/gh/mal2017/csc/Cargo.toml [INFO] started frobbing mal2017/csc [INFO] finished frobbing mal2017/csc [INFO] frobbed toml for mal2017/csc written to work/ex/pr-62133/sources/try#8ec8125bea94852768b56958f05da47666c21ab0/gh/mal2017/csc/Cargo.toml [INFO] crate mal2017/csc already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+5f9c0448dde167128d668da4555879f64e56af1d-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating git repository `https://github.com/mal2017/ngslib.git` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+8ec8125bea94852768b56958f05da47666c21ab0-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking mal2017/csc against master#5f9c0448dde167128d668da4555879f64e56af1d for pr-62133 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-62133/worker-6/master#5f9c0448dde167128d668da4555879f64e56af1d:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-62133/sources/master#5f9c0448dde167128d668da4555879f64e56af1d/gh/mal2017/csc:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+5f9c0448dde167128d668da4555879f64e56af1d-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 27b431ced3c2c09b2df9b6340dae80cb39d7e692108212a7ecb149039f71b713 [INFO] running `"docker" "start" "-a" "27b431ced3c2c09b2df9b6340dae80cb39d7e692108212a7ecb149039f71b713"` [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Checking bytecount v0.3.2 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling fs-utils v1.1.0 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Checking ndarray v0.12.1 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Compiling serde v1.0.90 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking csv v1.0.7 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio-types v0.4.0 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling regex v1.1.5 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Checking ngslib v0.1.0 (https://github.com/mal2017/ngslib.git?tag=0.1.0-alpha.2#b34385bf) [INFO] [stderr] Checking cutsites v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::*` [INFO] [stderr] --> src/main.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | use bio::io::bed::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `bio::io::bed::Record` [INFO] [stderr] --> src/main.rs:11:5 [INFO] [stderr] | [INFO] [stderr] 11 | use bio::io::bed::Record; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `itertools::Itertools` [INFO] [stderr] --> src/main.rs:19:5 [INFO] [stderr] | [INFO] [stderr] 19 | use itertools::Itertools; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `ArgGroup` [INFO] [stderr] --> src/main.rs:25:26 [INFO] [stderr] | [INFO] [stderr] 25 | use clap::{App, Arg, ArgGroup}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:101:9 [INFO] [stderr] | [INFO] [stderr] 101 | let mut bam = bam::IndexedReader::from_path(bp).unwrap(); [INFO] [stderr] | ----^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 41s [INFO] running `"docker" "inspect" "27b431ced3c2c09b2df9b6340dae80cb39d7e692108212a7ecb149039f71b713"` [INFO] running `"docker" "rm" "-f" "27b431ced3c2c09b2df9b6340dae80cb39d7e692108212a7ecb149039f71b713"` [INFO] [stdout] 27b431ced3c2c09b2df9b6340dae80cb39d7e692108212a7ecb149039f71b713