[INFO] cloning repository eclarke/qgramr
[INFO] running `"git" "clone" "--bare" "git://github.com/eclarke/qgramr.git" "work/cache/sources/gh/eclarke/qgramr"`
[INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/eclarke/qgramr'...
[INFO] running `"git" "clone" "work/cache/sources/gh/eclarke/qgramr" "work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/eclarke/qgramr"`
[INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/eclarke/qgramr'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/eclarke/qgramr" "work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/eclarke/qgramr"`
[INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/eclarke/qgramr'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 797461dce20a90970f9abcc23ec87e72339b200c
[INFO] sha for GitHub repo eclarke/qgramr: 797461dce20a90970f9abcc23ec87e72339b200c
[INFO] validating manifest of eclarke/qgramr on toolchain master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of eclarke/qgramr on toolchain try#8f81d0bf6baf07b92f1246696722485c4ca0b049
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing eclarke/qgramr
[INFO] finished frobbing eclarke/qgramr
[INFO] frobbed toml for eclarke/qgramr written to work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/eclarke/qgramr/Cargo.toml
[INFO] started frobbing eclarke/qgramr
[INFO] finished frobbing eclarke/qgramr
[INFO] frobbed toml for eclarke/qgramr written to work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/eclarke/qgramr/Cargo.toml
[INFO] crate eclarke/qgramr already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr] error: the lock file /mnt/big/ec2-user/crater/work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/eclarke/qgramr/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] the lockfile is outdated, regenerating it
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] checking eclarke/qgramr against try#8f81d0bf6baf07b92f1246696722485c4ca0b049 for pr-62008
[INFO] running `"docker" "create" "-v" "/mnt/big/ec2-user/crater/work/local/target-dirs/pr-62008/worker-7/try#8f81d0bf6baf07b92f1246696722485c4ca0b049:/opt/crater/target:rw,Z" "-v" "/mnt/big/ec2-user/crater/work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/eclarke/qgramr:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 2e2ae54c290d9da43700ddfe7116690fa322b678eddceccfe90f3138d728e619
[INFO] running `"docker" "start" "-a" "2e2ae54c290d9da43700ddfe7116690fa322b678eddceccfe90f3138d728e619"`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Checking qgramr v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] error[E0599]: no method named `read` found for type `bio::io::fasta::Reader<std::fs::File>` in the current scope
[INFO] [stderr]  --> src/main.rs:9:12
[INFO] [stderr]   |
[INFO] [stderr] 9 |     reader.read(&mut rec).ok().expect("Error reading record");
[INFO] [stderr]   |            ^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = help: items from traits can only be used if the trait is in scope
[INFO] [stderr] help: the following trait is implemented but not in scope, perhaps add a `use` for it:
[INFO] [stderr]   |
[INFO] [stderr] 2 | use bio::io::fasta::FastaRead;
[INFO] [stderr]   |
[INFO] [stderr] 
[INFO] [stderr] error[E0599]: no method named `expect` found for type `&str` in the current scope
[INFO] [stderr]   --> src/main.rs:15:52
[INFO] [stderr]    |
[INFO] [stderr] 15 |     println!("Building index over {}...", rec.id().expect("<NA>"));
[INFO] [stderr]    |                                                    ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error[E0599]: no method named `read` found for type `bio::io::fasta::Reader<std::fs::File>` in the current scope
[INFO] [stderr]  --> src/main.rs:9:12
[INFO] [stderr]   |
[INFO] [stderr] 9 |     reader.read(&mut rec).ok().expect("Error reading record");
[INFO] [stderr]   |            ^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = help: items from traits can only be used if the trait is in scope
[INFO] [stderr] help: the following trait is implemented but not in scope, perhaps add a `use` for it:
[INFO] [stderr]   |
[INFO] [stderr] 2 | use bio::io::fasta::FastaRead;
[INFO] [stderr]   |
[INFO] [stderr] 
[INFO] [stderr] error[E0599]: no method named `expect` found for type `&str` in the current scope
[INFO] [stderr]   --> src/main.rs:15:52
[INFO] [stderr]    |
[INFO] [stderr] 15 |     println!("Building index over {}...", rec.id().expect("<NA>"));
[INFO] [stderr]    |                                                    ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 2 previous errors
[INFO] [stderr] 
[INFO] [stderr] For more information about this error, try `rustc --explain E0599`.
[INFO] [stderr] error: Could not compile `qgramr`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: aborting due to 2 previous errors
[INFO] [stderr] 
[INFO] [stderr] For more information about this error, try `rustc --explain E0599`.
[INFO] [stderr] error: Could not compile `qgramr`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] running `"docker" "inspect" "2e2ae54c290d9da43700ddfe7116690fa322b678eddceccfe90f3138d728e619"`
[INFO] running `"docker" "rm" "-f" "2e2ae54c290d9da43700ddfe7116690fa322b678eddceccfe90f3138d728e619"`
[INFO] [stdout] 2e2ae54c290d9da43700ddfe7116690fa322b678eddceccfe90f3138d728e619