[INFO] cloning repository bihealth/var-agg [INFO] running `"git" "clone" "--bare" "git://github.com/bihealth/var-agg.git" "work/cache/sources/gh/bihealth/var-agg"` [INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/bihealth/var-agg'... [INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/bihealth/var-agg"` [INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/bihealth/var-agg'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/bihealth/var-agg" "work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/bihealth/var-agg"` [INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/bihealth/var-agg'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 8b199088fe24970bcd004d5f7c1c9cd174a0e82d [INFO] sha for GitHub repo bihealth/var-agg: 8b199088fe24970bcd004d5f7c1c9cd174a0e82d [INFO] validating manifest of bihealth/var-agg on toolchain master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1 [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of bihealth/var-agg on toolchain try#8f81d0bf6baf07b92f1246696722485c4ca0b049 [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing bihealth/var-agg [INFO] finished frobbing bihealth/var-agg [INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/bihealth/var-agg/Cargo.toml [INFO] started frobbing bihealth/var-agg [INFO] finished frobbing bihealth/var-agg [INFO] frobbed toml for bihealth/var-agg written to work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/bihealth/var-agg/Cargo.toml [INFO] crate bihealth/var-agg already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rust-htslib v0.21.0 [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking bihealth/var-agg against try#8f81d0bf6baf07b92f1246696722485c4ca0b049 for pr-62008 [INFO] running `"docker" "create" "-v" "/mnt/big/ec2-user/crater/work/local/target-dirs/pr-62008/worker-1/try#8f81d0bf6baf07b92f1246696722485c4ca0b049:/opt/crater/target:rw,Z" "-v" "/mnt/big/ec2-user/crater/work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/bihealth/var-agg:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 0cdaa67a6f13aed5aff4394e6c23afcf080d4cf1c6d959e56754b04b3ed54337 [INFO] running `"docker" "start" "-a" "0cdaa67a6f13aed5aff4394e6c23afcf080d4cf1c6d959e56754b04b3ed54337"` [INFO] [stderr] Compiling proc-macro2 v0.4.17 [INFO] [stderr] Compiling serde v1.0.76 [INFO] [stderr] Compiling yaml-rust v0.3.5 [INFO] [stderr] Checking slog v2.3.3 [INFO] [stderr] Checking csv-core v0.1.4 [INFO] [stderr] Checking itertools-num v0.1.2 [INFO] [stderr] Checking statrs v0.9.0 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Checking chrono v0.4.6 [INFO] [stderr] Checking error-chain v0.12.0 [INFO] [stderr] Checking slog-async v2.3.0 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Checking slog-term v2.4.0 [INFO] [stderr] Compiling quote v0.6.8 [INFO] [stderr] Compiling syn v0.14.9 [INFO] [stderr] Compiling serde_derive v1.0.76 [INFO] [stderr] Checking bv v0.7.4 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking bio-types v0.2.0 [INFO] [stderr] Checking csv v1.0.1 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Checking bio v0.22.0 [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling rust-htslib v0.21.0 [INFO] [stderr] Checking var-agg v0.1.1 (/opt/crater/workdir) [INFO] [stderr] error: unknown macro variable `emeta` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:13 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[deny(meta_variable_misuse)] on by default [INFO] [stderr] [INFO] [stderr] error: unknown macro variable `eitem` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:30 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: unknown macro variable `etyp` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:48 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:71:48 [INFO] [stderr] | [INFO] [stderr] 65 | ( $ ( $ qvar : ident : $ qtyp : ty ) , + ) $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 71 | $ ( # [ $ bmeta ] ) * => $ bitem : TUPLE [ $ ( $ qvar : $ qtyp ) , * ] ] queue [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:71:57 [INFO] [stderr] | [INFO] [stderr] 65 | ( $ ( $ qvar : ident : $ qtyp : ty ) , + ) $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 71 | $ ( # [ $ bmeta ] ) * => $ bitem : TUPLE [ $ ( $ qvar : $ qtyp ) , * ] ] queue [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:84:49 [INFO] [stderr] | [INFO] [stderr] 78 | { $ ( $ qvar : ident : $ qtyp : ty ) , + } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 84 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:84:58 [INFO] [stderr] | [INFO] [stderr] 78 | { $ ( $ qvar : ident : $ qtyp : ty ) , + } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 84 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:97:49 [INFO] [stderr] | [INFO] [stderr] 91 | { $ ( $ qvar : ident : $ qtyp : ty ) , + , } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 97 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:97:58 [INFO] [stderr] | [INFO] [stderr] 91 | { $ ( $ qvar : ident : $ qtyp : ty ) , + , } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 97 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:146:41 [INFO] [stderr] | [INFO] [stderr] 142 | $ ( ( $ ( $ ttyp : ty ) , + ) ) * ) { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 146 | $ ( # [ $ imeta ] ) * $ iitem $ ( ( $ ( $ ttyp ) , * ) ) * $ ( [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:174:7 [INFO] [stderr] | [INFO] [stderr] 168 | $ ( $ qvar : ident : $ qtyp : ty ) , + ] $ ( $ queue : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 174 | ( $ ( $ qtyp ) , * ) ) { } ] queue [ $ ( $ queue ) * ] ) ; } ; ( [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] warning: the item `rust_htslib` is imported redundantly [INFO] [stderr] --> src/bcf_utils.rs:14:13 [INFO] [stderr] | [INFO] [stderr] 4 | use rust_htslib; [INFO] [stderr] | ----------- the item `rust_htslib` is already imported here [INFO] [stderr] ... [INFO] [stderr] 14 | use rust_htslib; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: the item `ffi` is imported redundantly [INFO] [stderr] --> src/bcf_utils.rs:15:13 [INFO] [stderr] | [INFO] [stderr] 5 | use std::ffi; [INFO] [stderr] | -------- the item `ffi` is already imported here [INFO] [stderr] ... [INFO] [stderr] 15 | use std::ffi; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: unknown macro variable `emeta` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:13 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[deny(meta_variable_misuse)] on by default [INFO] [stderr] [INFO] [stderr] error: unknown macro variable `eitem` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:30 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: unknown macro variable `etyp` [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:54:48 [INFO] [stderr] | [INFO] [stderr] 54 | $ ( $ ( # [ $ emeta ] ) * => $ eitem $ ( ( $ ( $ etyp ) , * ) ) * ) * $ ( [INFO] [stderr] | ^^^^^^ [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:71:48 [INFO] [stderr] | [INFO] [stderr] 65 | ( $ ( $ qvar : ident : $ qtyp : ty ) , + ) $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 71 | $ ( # [ $ bmeta ] ) * => $ bitem : TUPLE [ $ ( $ qvar : $ qtyp ) , * ] ] queue [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:71:57 [INFO] [stderr] | [INFO] [stderr] 65 | ( $ ( $ qvar : ident : $ qtyp : ty ) , + ) $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 71 | $ ( # [ $ bmeta ] ) * => $ bitem : TUPLE [ $ ( $ qvar : $ qtyp ) , * ] ] queue [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:84:49 [INFO] [stderr] | [INFO] [stderr] 78 | { $ ( $ qvar : ident : $ qtyp : ty ) , + } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 84 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:84:58 [INFO] [stderr] | [INFO] [stderr] 78 | { $ ( $ qvar : ident : $ qtyp : ty ) , + } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 84 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:97:49 [INFO] [stderr] | [INFO] [stderr] 91 | { $ ( $ qvar : ident : $ qtyp : ty ) , + , } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 97 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:97:58 [INFO] [stderr] | [INFO] [stderr] 91 | { $ ( $ qvar : ident : $ qtyp : ty ) , + , } $ ( $ tail : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 97 | $ ( # [ $ bmeta ] ) * => $ bitem : STRUCT [ $ ( $ qvar : $ qtyp ) , * ] ] [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:146:41 [INFO] [stderr] | [INFO] [stderr] 142 | $ ( ( $ ( $ ttyp : ty ) , + ) ) * ) { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 146 | $ ( # [ $ imeta ] ) * $ iitem $ ( ( $ ( $ ttyp ) , * ) ) * $ ( [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] error: meta-variable repeats with different Kleene operator [INFO] [stderr] --> <::error_chain::impl_error_chain_kind::impl_error_chain_kind macros>:174:7 [INFO] [stderr] | [INFO] [stderr] 168 | $ ( $ qvar : ident : $ qtyp : ty ) , + ] $ ( $ queue : tt ) * ] ) => { [INFO] [stderr] | - expected repetition [INFO] [stderr] ... [INFO] [stderr] 174 | ( $ ( $ qtyp ) , * ) ) { } ] queue [ $ ( $ queue ) * ] ) ; } ; ( [INFO] [stderr] | ^^^^^^ - conflicting repetition [INFO] [stderr] [INFO] [stderr] warning: the item `rust_htslib` is imported redundantly [INFO] [stderr] --> src/bcf_utils.rs:14:13 [INFO] [stderr] | [INFO] [stderr] 4 | use rust_htslib; [INFO] [stderr] | ----------- the item `rust_htslib` is already imported here [INFO] [stderr] ... [INFO] [stderr] 14 | use rust_htslib; [INFO] [stderr] | ^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: the item `ffi` is imported redundantly [INFO] [stderr] --> src/bcf_utils.rs:15:13 [INFO] [stderr] | [INFO] [stderr] 5 | use std::ffi; [INFO] [stderr] | -------- the item `ffi` is already imported here [INFO] [stderr] ... [INFO] [stderr] 15 | use std::ffi; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] error: aborting due to 11 previous errors [INFO] [stderr] [INFO] [stderr] error: Could not compile `var-agg`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: aborting due to 11 previous errors [INFO] [stderr] [INFO] [stderr] error: Could not compile `var-agg`. [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] running `"docker" "inspect" "0cdaa67a6f13aed5aff4394e6c23afcf080d4cf1c6d959e56754b04b3ed54337"` [INFO] running `"docker" "rm" "-f" "0cdaa67a6f13aed5aff4394e6c23afcf080d4cf1c6d959e56754b04b3ed54337"` [INFO] [stdout] 0cdaa67a6f13aed5aff4394e6c23afcf080d4cf1c6d959e56754b04b3ed54337