[INFO] cloning repository 10XGenomics/rust-pseudoaligner [INFO] running `"git" "clone" "--bare" "git://github.com/10XGenomics/rust-pseudoaligner.git" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/10XGenomics/rust-pseudoaligner'... [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/10XGenomics/rust-pseudoaligner" "work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/10XGenomics/rust-pseudoaligner"` [INFO] [stderr] Cloning into 'work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/10XGenomics/rust-pseudoaligner'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] fb0d705d5c4db8a84449ee3446ab50c6f6a7a95b [INFO] sha for GitHub repo 10XGenomics/rust-pseudoaligner: fb0d705d5c4db8a84449ee3446ab50c6f6a7a95b [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1 [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of 10XGenomics/rust-pseudoaligner on toolchain try#8f81d0bf6baf07b92f1246696722485c4ca0b049 [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] started frobbing 10XGenomics/rust-pseudoaligner [INFO] finished frobbing 10XGenomics/rust-pseudoaligner [INFO] frobbed toml for 10XGenomics/rust-pseudoaligner written to work/ex/pr-62008/sources/try#8f81d0bf6baf07b92f1246696722485c4ca0b049/gh/10XGenomics/rust-pseudoaligner/Cargo.toml [INFO] crate 10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Updating git repository `https://github.com/k3yavi/pretty-env-logger` [INFO] running `"/mnt/big/ec2-user/crater/work/local/cargo-home/bin/cargo" "+8f81d0bf6baf07b92f1246696722485c4ca0b049-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking 10XGenomics/rust-pseudoaligner against master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1 for pr-62008 [INFO] running `"docker" "create" "-v" "/mnt/big/ec2-user/crater/work/local/target-dirs/pr-62008/worker-3/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1:/opt/crater/target:rw,Z" "-v" "/mnt/big/ec2-user/crater/work/ex/pr-62008/sources/master#848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1/gh/10XGenomics/rust-pseudoaligner:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/ec2-user/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+848e0a23f34aaab3e4a974b031c86ef2a4e4fcc1-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 97b4a8f9fbfbe3afdd8df1f31b3827cf9c4c6d8a6627a051fc56e4f12d6a1aed [INFO] running `"docker" "start" "-a" "97b4a8f9fbfbe3afdd8df1f31b3827cf9c4c6d8a6627a051fc56e4f12d6a1aed"` [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Checking spin v0.4.9 [INFO] [stderr] Checking pdqsort v1.0.3 [INFO] [stderr] Checking log v0.4.5 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools-num v0.1.2 [INFO] [stderr] Checking num-bigint v0.2.0 [INFO] [stderr] Checking num-iter v0.1.37 [INFO] [stderr] Checking chrono v0.4.6 [INFO] [stderr] Checking ndarray v0.9.1 [INFO] [stderr] Checking crossbeam-deque v0.5.2 [INFO] [stderr] Checking concurrent-hashmap v0.2.2 [INFO] [stderr] Checking serde v1.0.78 [INFO] [stderr] Checking env_logger v0.5.13 [INFO] [stderr] Checking crossbeam v0.4.1 [INFO] [stderr] Checking pretty_env_logger v0.2.3 (https://github.com/k3yavi/pretty-env-logger#57963895) [INFO] [stderr] Checking num-rational v0.2.1 [INFO] [stderr] Checking num v0.2.0 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking serde_json v1.0.27 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking csv v1.0.1 [INFO] [stderr] Checking boomphf v0.2.1 (https://github.com/10XGenomics/rust-boomphf#93460338) [INFO] [stderr] Checking bio-types v0.2.0 [INFO] [stderr] Checking bincode v1.0.1 [INFO] [stderr] Checking docopt v1.0.1 [INFO] [stderr] Checking bio v0.22.0 [INFO] [stderr] Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn#4f12ecdc) [INFO] [stderr] Checking debruijn_mapping v0.2.0 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/utils.rs:48:54 [INFO] [stderr] | [INFO] [stderr] 48 | fn _open_with_gz>(p: P) -> Result, Error> { [INFO] [stderr] | ^^^^^^^ help: use `dyn`: `dyn BufRead` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 51.61s [INFO] running `"docker" "inspect" "97b4a8f9fbfbe3afdd8df1f31b3827cf9c4c6d8a6627a051fc56e4f12d6a1aed"` [INFO] running `"docker" "rm" "-f" "97b4a8f9fbfbe3afdd8df1f31b3827cf9c4c6d8a6627a051fc56e4f12d6a1aed"` [INFO] [stdout] 97b4a8f9fbfbe3afdd8df1f31b3827cf9c4c6d8a6627a051fc56e4f12d6a1aed