[INFO] cloning repository mal2017/tcq
[INFO] running `"git" "clone" "--bare" "git://github.com/mal2017/tcq.git" "work/cache/sources/gh/mal2017/tcq"`
[INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/mal2017/tcq'...
[INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/tcq" "work/ex/pr-61874/sources/master#9f06855064ed06a50c496577b21ca50f92a2e67d/gh/mal2017/tcq"`
[INFO] [stderr] Cloning into 'work/ex/pr-61874/sources/master#9f06855064ed06a50c496577b21ca50f92a2e67d/gh/mal2017/tcq'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/mal2017/tcq" "work/ex/pr-61874/sources/try#d3301713b54af69ca9de941a8c6b0d8287dbd6df/gh/mal2017/tcq"`
[INFO] [stderr] Cloning into 'work/ex/pr-61874/sources/try#d3301713b54af69ca9de941a8c6b0d8287dbd6df/gh/mal2017/tcq'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 8f1d6f947f2d7e33eec738ba82cec4875b4e4f4f
[INFO] sha for GitHub repo mal2017/tcq: 8f1d6f947f2d7e33eec738ba82cec4875b4e4f4f
[INFO] validating manifest of mal2017/tcq on toolchain master#9f06855064ed06a50c496577b21ca50f92a2e67d
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+9f06855064ed06a50c496577b21ca50f92a2e67d-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of mal2017/tcq on toolchain try#d3301713b54af69ca9de941a8c6b0d8287dbd6df
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+d3301713b54af69ca9de941a8c6b0d8287dbd6df-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing mal2017/tcq
[INFO] finished frobbing mal2017/tcq
[INFO] frobbed toml for mal2017/tcq written to work/ex/pr-61874/sources/master#9f06855064ed06a50c496577b21ca50f92a2e67d/gh/mal2017/tcq/Cargo.toml
[INFO] started frobbing mal2017/tcq
[INFO] finished frobbing mal2017/tcq
[INFO] frobbed toml for mal2017/tcq written to work/ex/pr-61874/sources/try#d3301713b54af69ca9de941a8c6b0d8287dbd6df/gh/mal2017/tcq/Cargo.toml
[INFO] crate mal2017/tcq already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+9f06855064ed06a50c496577b21ca50f92a2e67d-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+d3301713b54af69ca9de941a8c6b0d8287dbd6df-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] checking mal2017/tcq against try#d3301713b54af69ca9de941a8c6b0d8287dbd6df for pr-61874
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61874/worker-3/try#d3301713b54af69ca9de941a8c6b0d8287dbd6df:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61874/sources/try#d3301713b54af69ca9de941a8c6b0d8287dbd6df/gh/mal2017/tcq:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+d3301713b54af69ca9de941a8c6b0d8287dbd6df-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 62caf49ec31822c8b554b48be3d0496faa6297f72ee02fd42e79e8a8733e3641
[INFO] running `"docker" "start" "-a" "62caf49ec31822c8b554b48be3d0496faa6297f72ee02fd42e79e8a8733e3641"`
[INFO] [stderr]    Compiling proc-macro2 v0.4.29
[INFO] [stderr]    Compiling syn v0.15.33
[INFO] [stderr]    Compiling memchr v2.2.0
[INFO] [stderr]    Compiling serde v1.0.90
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[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling num-complex v0.2.1
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling ndarray v0.11.2
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking cast v0.2.2
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking bytecount v0.3.2
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[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling fs-utils v1.1.0
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[INFO] [stderr]     Checking rand_os v0.1.3
[INFO] [stderr]     Checking rand v0.4.6
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[INFO] [stderr]     Checking aho-corasick v0.7.3
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[INFO] [stderr]     Checking rayon v1.0.3
[INFO] [stderr]    Compiling which v2.0.1
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[INFO] [stderr]     Checking parking_lot v0.7.1
[INFO] [stderr]     Checking env_logger v0.5.13
[INFO] [stderr]     Checking console v0.7.5
[INFO] [stderr]     Checking indicatif v0.11.0
[INFO] [stderr]    Compiling env_logger v0.6.1
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]     Checking serde_json v1.0.39
[INFO] [stderr]     Checking csv v1.0.7
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking clap v2.32.0
[INFO] [stderr]     Checking tinytemplate v1.0.1
[INFO] [stderr]     Checking criterion v0.2.11
[INFO] [stderr]    Compiling rust-htslib v0.22.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=6a93aa473077c08aa52be0c2a89f1ee9d1c27609#6a93aa47)
[INFO] [stderr]     Checking tcq v0.5.0-alpha.1 (/opt/crater/workdir)
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:100:29
[INFO] [stderr]     |
[INFO] [stderr] 100 |                     rpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_parens)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:101:29
[INFO] [stderr]     |
[INFO] [stderr] 101 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:105:29
[INFO] [stderr]     |
[INFO] [stderr] 105 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:108:33
[INFO] [stderr]     |
[INFO] [stderr] 108 |                         rpos += (l as i32);
[INFO] [stderr]     |                                 ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:112:29
[INFO] [stderr]     |
[INFO] [stderr] 112 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:116:29
[INFO] [stderr]     |
[INFO] [stderr] 116 |                     rpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:100:29
[INFO] [stderr]     |
[INFO] [stderr] 100 |                     rpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_parens)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:101:29
[INFO] [stderr]     |
[INFO] [stderr] 101 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:105:29
[INFO] [stderr]     |
[INFO] [stderr] 105 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:108:33
[INFO] [stderr]     |
[INFO] [stderr] 108 |                         rpos += (l as i32);
[INFO] [stderr]     |                                 ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:112:29
[INFO] [stderr]     |
[INFO] [stderr] 112 |                     qpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around assigned value
[INFO] [stderr]    --> src/spliced_read_utils.rs:116:29
[INFO] [stderr]     |
[INFO] [stderr] 116 |                     rpos += (l as i32);
[INFO] [stderr]     |                             ^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `is_r1`
[INFO] [stderr]    --> src/handler.rs:156:13
[INFO] [stderr]     |
[INFO] [stderr] 156 |         let is_r1 = self.is_first_in_template() || !(self.is_paired());
[INFO] [stderr]     |             ^^^^^ help: consider prefixing with an underscore: `_is_r1`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_variables)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `is_r1`
[INFO] [stderr]    --> src/handler.rs:156:13
[INFO] [stderr]     |
[INFO] [stderr] 156 |         let is_r1 = self.is_first_in_template() || !(self.is_paired());
[INFO] [stderr]     |             ^^^^^ help: consider prefixing with an underscore: `_is_r1`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_variables)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `foo_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:53:24
[INFO] [stderr]    |
[INFO] [stderr] 53 |             static ref foo_re: Regex  = Regex::new(r"A").unwrap();
[INFO] [stderr]    |                        ^^^^^^ help: convert the identifier to upper case: `FOO_RE`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(non_upper_case_globals)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `bar_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:54:24
[INFO] [stderr]    |
[INFO] [stderr] 54 |             static ref bar_re: Regex  = Regex::new(r"T").unwrap();
[INFO] [stderr]    |                        ^^^^^^ help: convert the identifier to upper case: `BAR_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `forward_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:82:24
[INFO] [stderr]    |
[INFO] [stderr] 82 |             static ref forward_re: Regex  = Regex::new(r"T").unwrap();
[INFO] [stderr]    |                        ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `reverse_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:83:24
[INFO] [stderr]    |
[INFO] [stderr] 83 |             static ref reverse_re: Regex  = Regex::new(r"A").unwrap();
[INFO] [stderr]    |                        ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `re_perf` should have an upper case name
[INFO] [stderr]   --> src/expander.rs:13:20
[INFO] [stderr]    |
[INFO] [stderr] 13 |         static ref re_perf: Regex  = Regex::new(r"\d+").unwrap();
[INFO] [stderr]    |                    ^^^^^^^ help: convert the identifier to upper case: `RE_PERF`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `re_del` should have an upper case name
[INFO] [stderr]   --> src/expander.rs:45:20
[INFO] [stderr]    |
[INFO] [stderr] 45 |         static ref re_del: Regex  = Regex::new(r"\^\D+").unwrap();
[INFO] [stderr]    |                    ^^^^^^ help: convert the identifier to upper case: `RE_DEL`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `foo_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:53:24
[INFO] [stderr]    |
[INFO] [stderr] 53 |             static ref foo_re: Regex  = Regex::new(r"A").unwrap();
[INFO] [stderr]    |                        ^^^^^^ help: convert the identifier to upper case: `FOO_RE`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(non_upper_case_globals)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `bar_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:54:24
[INFO] [stderr]    |
[INFO] [stderr] 54 |             static ref bar_re: Regex  = Regex::new(r"T").unwrap();
[INFO] [stderr]    |                        ^^^^^^ help: convert the identifier to upper case: `BAR_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `forward_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:82:24
[INFO] [stderr]    |
[INFO] [stderr] 82 |             static ref forward_re: Regex  = Regex::new(r"T").unwrap();
[INFO] [stderr]    |                        ^^^^^^^^^^ help: convert the identifier to upper case: `FORWARD_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `reverse_re` should have an upper case name
[INFO] [stderr]   --> src/handler.rs:83:24
[INFO] [stderr]    |
[INFO] [stderr] 83 |             static ref reverse_re: Regex  = Regex::new(r"A").unwrap();
[INFO] [stderr]    |                        ^^^^^^^^^^ help: convert the identifier to upper case: `REVERSE_RE`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `re_perf` should have an upper case name
[INFO] [stderr]   --> src/expander.rs:13:20
[INFO] [stderr]    |
[INFO] [stderr] 13 |         static ref re_perf: Regex  = Regex::new(r"\d+").unwrap();
[INFO] [stderr]    |                    ^^^^^^^ help: convert the identifier to upper case: `RE_PERF`
[INFO] [stderr] 
[INFO] [stderr] warning: static variable `re_del` should have an upper case name
[INFO] [stderr]   --> src/expander.rs:45:20
[INFO] [stderr]    |
[INFO] [stderr] 45 |         static ref re_del: Regex  = Regex::new(r"\^\D+").unwrap();
[INFO] [stderr]    |                    ^^^^^^ help: convert the identifier to upper case: `RE_DEL`
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:15:26
[INFO] [stderr]    |
[INFO] [stderr] 15 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `tcq::handler`
[INFO] [stderr]   --> src/main.rs:16:9
[INFO] [stderr]    |
[INFO] [stderr] 16 |     use tcq::handler;
[INFO] [stderr]    |         ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `ArgGroup`
[INFO] [stderr]   --> src/main.rs:15:26
[INFO] [stderr]    |
[INFO] [stderr] 15 |     use clap::{App, Arg, ArgGroup};
[INFO] [stderr]    |                          ^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `tcq::handler`
[INFO] [stderr]   --> src/main.rs:16:9
[INFO] [stderr]    |
[INFO] [stderr] 16 |     use tcq::handler;
[INFO] [stderr]    |         ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `criterion::black_box`
[INFO] [stderr]  --> benches/tcq_benches.rs:7:5
[INFO] [stderr]   |
[INFO] [stderr] 7 | use criterion::black_box;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `bampath`
[INFO] [stderr]   --> benches/tcq_benches.rs:25:9
[INFO] [stderr]    |
[INFO] [stderr] 25 |     let bampath = Path::new("test/insertion_forward.r1s.myc.bam");
[INFO] [stderr]    |         ^^^^^^^ help: consider prefixing with an underscore: `_bampath`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_variables)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `tcc`
[INFO] [stderr]   --> benches/tcq_benches.rs:32:9
[INFO] [stderr]    |
[INFO] [stderr] 32 |     let tcc: Vec<u32> = bam
[INFO] [stderr]    |         ^^^ help: consider prefixing with an underscore: `_tcc`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 4m 06s
[INFO] running `"docker" "inspect" "62caf49ec31822c8b554b48be3d0496faa6297f72ee02fd42e79e8a8733e3641"`
[INFO] running `"docker" "rm" "-f" "62caf49ec31822c8b554b48be3d0496faa6297f72ee02fd42e79e8a8733e3641"`
[INFO] [stdout] 62caf49ec31822c8b554b48be3d0496faa6297f72ee02fd42e79e8a8733e3641