[INFO] fetching crate ncbitaxonomy 0.1.5... [INFO] extracting crate ncbitaxonomy 0.1.5 into work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/ncbitaxonomy/0.1.5 [INFO] extracting crate ncbitaxonomy 0.1.5 into work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/ncbitaxonomy/0.1.5 [INFO] validating manifest of ncbitaxonomy-0.1.5 on toolchain master#c8865d8e195813ade6b84434ac9f8850e7112d1a [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of ncbitaxonomy-0.1.5 on toolchain try#e212b7d492c96d3837691ba29d32d5f468933fb8 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing ncbitaxonomy-0.1.5 [INFO] finished frobbing ncbitaxonomy-0.1.5 [INFO] frobbed toml for ncbitaxonomy-0.1.5 written to work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/ncbitaxonomy/0.1.5/Cargo.toml [INFO] started frobbing ncbitaxonomy-0.1.5 [INFO] finished frobbing ncbitaxonomy-0.1.5 [INFO] frobbed toml for ncbitaxonomy-0.1.5 written to work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/ncbitaxonomy/0.1.5/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing ncbitaxonomy-0.1.5 against try#e212b7d492c96d3837691ba29d32d5f468933fb8 for pr-61629 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-3/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/ncbitaxonomy/0.1.5:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "build" "--frozen"` [INFO] [stdout] bcdbed153b679466c3cd59d0b525bb573484f365e92ad12cee0ec47bd3dde197 [INFO] running `"docker" "start" "-a" "bcdbed153b679466c3cd59d0b525bb573484f365e92ad12cee0ec47bd3dde197"` [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling indextree v3.0.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/crater/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 30.84s [INFO] running `"docker" "inspect" "bcdbed153b679466c3cd59d0b525bb573484f365e92ad12cee0ec47bd3dde197"` [INFO] running `"docker" "rm" "-f" "bcdbed153b679466c3cd59d0b525bb573484f365e92ad12cee0ec47bd3dde197"` [INFO] [stdout] bcdbed153b679466c3cd59d0b525bb573484f365e92ad12cee0ec47bd3dde197 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-3/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/ncbitaxonomy/0.1.5:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "test" "--frozen" "--no-run"` [INFO] [stdout] fb8ff24aee28ff772167cbe3a37c358677e685558c6bfe42ab0da3c47bc5f677 [INFO] running `"docker" "start" "-a" "fb8ff24aee28ff772167cbe3a37c358677e685558c6bfe42ab0da3c47bc5f677"` [INFO] [stderr] Compiling ncbitaxonomy v0.1.5 (/opt/crater/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/lib.rs:107:17 [INFO] [stderr] | [INFO] [stderr] 107 | let mut fields = line.split("\t|\t").collect::>(); [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:74:127 [INFO] [stderr] | [INFO] [stderr] 74 | Some(name) => Box::new(File::create(name).unwrap_or_else(|_| panic!("Failed to open output file ({})", name))) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bin/taxonomy_filter_refseq.rs:75:47 [INFO] [stderr] | [INFO] [stderr] 75 | None => Box::new(io::stdout()) as Box, [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2.14s [INFO] running `"docker" "inspect" "fb8ff24aee28ff772167cbe3a37c358677e685558c6bfe42ab0da3c47bc5f677"` [INFO] running `"docker" "rm" "-f" "fb8ff24aee28ff772167cbe3a37c358677e685558c6bfe42ab0da3c47bc5f677"` [INFO] [stdout] fb8ff24aee28ff772167cbe3a37c358677e685558c6bfe42ab0da3c47bc5f677 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-3/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/ncbitaxonomy/0.1.5:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "test" "--frozen"` [INFO] [stdout] d3acc70abd8a5ace633187682cfbf37f8e967497ec3caea3359ddb9b628aed60 [INFO] running `"docker" "start" "-a" "d3acc70abd8a5ace633187682cfbf37f8e967497ec3caea3359ddb9b628aed60"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.06s [INFO] [stderr] Running /opt/crater/target/debug/deps/ncbitaxonomy-f1e8d802fb701e89 [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stderr] Running /opt/crater/target/debug/deps/taxonomy_filter_refseq-981f8673cc965496 [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiTaxonomy::from_ncbi_files (line 49) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `"docker" "inspect" "d3acc70abd8a5ace633187682cfbf37f8e967497ec3caea3359ddb9b628aed60"` [INFO] running `"docker" "rm" "-f" "d3acc70abd8a5ace633187682cfbf37f8e967497ec3caea3359ddb9b628aed60"` [INFO] [stdout] d3acc70abd8a5ace633187682cfbf37f8e967497ec3caea3359ddb9b628aed60