[INFO] fetching crate coverm 0.2.0-alpha6... [INFO] extracting crate coverm 0.2.0-alpha6 into work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/coverm/0.2.0-alpha6 [INFO] extracting crate coverm 0.2.0-alpha6 into work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/coverm/0.2.0-alpha6 [INFO] validating manifest of coverm-0.2.0-alpha6 on toolchain master#c8865d8e195813ade6b84434ac9f8850e7112d1a [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of coverm-0.2.0-alpha6 on toolchain try#e212b7d492c96d3837691ba29d32d5f468933fb8 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing coverm-0.2.0-alpha6 [INFO] finished frobbing coverm-0.2.0-alpha6 [INFO] frobbed toml for coverm-0.2.0-alpha6 written to work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/coverm/0.2.0-alpha6/Cargo.toml [INFO] started frobbing coverm-0.2.0-alpha6 [INFO] finished frobbing coverm-0.2.0-alpha6 [INFO] frobbed toml for coverm-0.2.0-alpha6 written to work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/coverm/0.2.0-alpha6/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] testing coverm-0.2.0-alpha6 against try#e212b7d492c96d3837691ba29d32d5f468933fb8 for pr-61629 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-7/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/coverm/0.2.0-alpha6:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "build" "--frozen"` [INFO] [stdout] 676c47228ef36301b4f3e811526d2af25c5563999f564b5f234ae22bbe9e01ad [INFO] running `"docker" "start" "-a" "676c47228ef36301b4f3e811526d2af25c5563999f564b5f234ae22bbe9e01ad"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] [stderr] Compiling bindgen v0.36.1 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling clang-sys v0.22.0 [INFO] [stderr] Compiling fs-utils v1.1.1 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling env_logger v0.5.13 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bio-types v0.5.1 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling rust-htslib v0.22.0 [INFO] [stderr] Compiling coverm v0.2.0-alpha6 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bam_generator.rs:521:20 [INFO] [stderr] | [INFO] [stderr] 521 | pub index: Box, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn BwaIndexStruct` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:6:31 [INFO] [stderr] | [INFO] [stderr] 6 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:10:31 [INFO] [stderr] | [INFO] [stderr] 10 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:46:28 [INFO] [stderr] | [INFO] [stderr] 46 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:20:28 [INFO] [stderr] | [INFO] [stderr] 20 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:97:28 [INFO] [stderr] | [INFO] [stderr] 97 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:126:24 [INFO] [stderr] | [INFO] [stderr] 126 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:253:24 [INFO] [stderr] | [INFO] [stderr] 253 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:71:36 [INFO] [stderr] | [INFO] [stderr] 71 | for (coverage, mut estimator) in coverages.iter().zip(coverage_estimators.iter_mut()) { [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:23:9 [INFO] [stderr] | [INFO] [stderr] 23 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:350:9 [INFO] [stderr] | [INFO] [stderr] 350 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_takers.rs:325:33 [INFO] [stderr] | [INFO] [stderr] 325 | let mut struct_to_return; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_printer.rs:282:17 [INFO] [stderr] | [INFO] [stderr] 282 | let mut coverage_multipliers: Vec = [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:675:28 [INFO] [stderr] | [INFO] [stderr] 675 | print_stream: &mut std::io::Write) -> Self { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:362:25 [INFO] [stderr] | [INFO] [stderr] 362 | let mut bam_readers = coverm::bam_generator::generate_filtered_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:377:25 [INFO] [stderr] | [INFO] [stderr] 377 | let mut bam_readers = coverm::bam_generator::generate_named_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:443:21 [INFO] [stderr] | [INFO] [stderr] 443 | let mut reader = bam::Reader::from_path(bam).expect( [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:786:17 [INFO] [stderr] | [INFO] [stderr] 786 | let mut genome_fasta_files: Vec = parse_list_of_genome_fasta_files(m); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 46s [INFO] running `"docker" "inspect" "676c47228ef36301b4f3e811526d2af25c5563999f564b5f234ae22bbe9e01ad"` [INFO] running `"docker" "rm" "-f" "676c47228ef36301b4f3e811526d2af25c5563999f564b5f234ae22bbe9e01ad"` [INFO] [stdout] 676c47228ef36301b4f3e811526d2af25c5563999f564b5f234ae22bbe9e01ad [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-7/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/coverm/0.2.0-alpha6:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "test" "--frozen" "--no-run"` [INFO] [stdout] 2efc5c560fb551991940983f6dc33c63c8f3209a5f4957101e0fdc54eaee7935 [INFO] running `"docker" "start" "-a" "2efc5c560fb551991940983f6dc33c63c8f3209a5f4957101e0fdc54eaee7935"` [INFO] [stderr] Compiling winapi v0.3.7 [INFO] [stderr] Compiling winconsole v0.10.0 [INFO] [stderr] Compiling colored v1.8.0 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling coverm v0.2.0-alpha6 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:675:28 [INFO] [stderr] | [INFO] [stderr] 675 | print_stream: &mut std::io::Write) -> Self { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/bam_generator.rs:521:20 [INFO] [stderr] | [INFO] [stderr] 521 | pub index: Box, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn BwaIndexStruct` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:6:31 [INFO] [stderr] | [INFO] [stderr] 6 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:10:31 [INFO] [stderr] | [INFO] [stderr] 10 | print_stream: &'a mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:46:28 [INFO] [stderr] | [INFO] [stderr] 46 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_takers.rs:53:28 [INFO] [stderr] | [INFO] [stderr] 53 | print_stream: &mut std::io::Write) -> CoverageTakerType { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:20:28 [INFO] [stderr] | [INFO] [stderr] 20 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:97:28 [INFO] [stderr] | [INFO] [stderr] 97 | print_stream: &mut std::io::Write) { [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:126:24 [INFO] [stderr] | [INFO] [stderr] 126 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/coverage_printer.rs:253:24 [INFO] [stderr] | [INFO] [stderr] 253 | print_stream: &mut std::io::Write, [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:362:25 [INFO] [stderr] | [INFO] [stderr] 362 | let mut bam_readers = coverm::bam_generator::generate_filtered_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:377:25 [INFO] [stderr] | [INFO] [stderr] 377 | let mut bam_readers = coverm::bam_generator::generate_named_bam_readers_from_bam_files( [INFO] [stderr] | ----^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:443:21 [INFO] [stderr] | [INFO] [stderr] 443 | let mut reader = bam::Reader::from_path(bam).expect( [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:786:17 [INFO] [stderr] | [INFO] [stderr] 786 | let mut genome_fasta_files: Vec = parse_list_of_genome_fasta_files(m); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:71:36 [INFO] [stderr] | [INFO] [stderr] 71 | for (coverage, mut estimator) in coverages.iter().zip(coverage_estimators.iter_mut()) { [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/contig.rs:23:9 [INFO] [stderr] | [INFO] [stderr] 23 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:27:9 [INFO] [stderr] | [INFO] [stderr] 27 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/genome.rs:350:9 [INFO] [stderr] | [INFO] [stderr] 350 | for mut bam_generator in bam_readers { [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_takers.rs:325:33 [INFO] [stderr] | [INFO] [stderr] 325 | let mut struct_to_return; [INFO] [stderr] | ----^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/coverage_printer.rs:282:17 [INFO] [stderr] | [INFO] [stderr] 282 | let mut coverage_multipliers: Vec = [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 12.73s [INFO] running `"docker" "inspect" "2efc5c560fb551991940983f6dc33c63c8f3209a5f4957101e0fdc54eaee7935"` [INFO] running `"docker" "rm" "-f" "2efc5c560fb551991940983f6dc33c63c8f3209a5f4957101e0fdc54eaee7935"` [INFO] [stdout] 2efc5c560fb551991940983f6dc33c63c8f3209a5f4957101e0fdc54eaee7935 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-7/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/coverm/0.2.0-alpha6:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "test" "--frozen"` [INFO] [stdout] 38f32ba452ed3d0a626b7b50b13d0c34002f4c8d7f35e7461f2ceafaa9ccb14d [INFO] running `"docker" "start" "-a" "38f32ba452ed3d0a626b7b50b13d0c34002f4c8d7f35e7461f2ceafaa9ccb14d"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] Running /opt/crater/target/debug/deps/coverm-65ddcc6f32150921 [INFO] [stdout] [INFO] [stdout] running 70 tests [INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered ... FAILED [INFO] [stdout] test contig::tests::test_one_genome_two_contigs_first_covered_no_zeros ... FAILED [INFO] [stdout] test contig::tests::test_julian_error ... FAILED [INFO] [stdout] test contig::tests::test_contig_end_exclusion ... FAILED [INFO] [stdout] test contig::tests::test_one_contig_variance ... FAILED [INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes_reverse_order ... FAILED [INFO] [stdout] test contig::tests::test_multiple_outputs_one_zero_no_print_zeroes ... FAILED [INFO] [stdout] test contig::tests::test_multiple_coverage_methods ... FAILED [INFO] [stdout] test contig::tests::test_one_read_of_pair_mapped ... FAILED [INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_easy_normalised ... ok [INFO] [stdout] test contig::tests::test_variance_estimator_all_bases_covered ... FAILED [INFO] [stdout] test coverage_printer::tests::test_dense_cached_printer_hello_world ... ok [INFO] [stdout] test contig::tests::test_trimmed_mean_bug ... FAILED [INFO] [stdout] test coverage_takers::tests::test_cached_hello_world ... ok [INFO] [stdout] test contig::tests::test_reads_not_counting_when_sufficient_min_covered ... FAILED [INFO] [stdout] test contig::tests::test_reads_not_counting_when_insufficient_min_covered ... FAILED [INFO] [stdout] test coverage_printer::tests::test_metabat_mode_printer_easy ... ok [INFO] [stdout] test coverage_takers::tests::test_cached_next_one_coverage ... ok [INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_matching ... ok [INFO] [stderr] [E::bam_hdr_read] Invalid BAM binary header [INFO] [stdout] test coverage_takers::tests::test_cached_next ... ok [INFO] [stdout] test contig::tests::test_proper_pairs_only ... FAILED [INFO] [stdout] test filter::tests::test_filter_single_reads_inverse ... FAILED [INFO] [stdout] test filter::tests::test_filter_single_and_paired_reads_inverse ... FAILED [INFO] [stdout] test coverage_takers::tests::test_cached_two_samples_mismatching ... ok [INFO] [stderr] error: process didn't exit successfully: `/opt/crater/target/debug/deps/coverm-65ddcc6f32150921` (signal: 11, SIGSEGV: invalid memory reference) [INFO] running `"docker" "inspect" "38f32ba452ed3d0a626b7b50b13d0c34002f4c8d7f35e7461f2ceafaa9ccb14d"` [INFO] running `"docker" "rm" "-f" "38f32ba452ed3d0a626b7b50b13d0c34002f4c8d7f35e7461f2ceafaa9ccb14d"` [INFO] [stdout] 38f32ba452ed3d0a626b7b50b13d0c34002f4c8d7f35e7461f2ceafaa9ccb14d