[INFO] cloning repository sveint/bamstats [INFO] running `"git" "clone" "--bare" "git://github.com/sveint/bamstats.git" "work/cache/sources/gh/sveint/bamstats"` [INFO] [stderr] Cloning into bare repository 'work/cache/sources/gh/sveint/bamstats'... [INFO] running `"git" "clone" "work/cache/sources/gh/sveint/bamstats" "work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/gh/sveint/bamstats"` [INFO] [stderr] Cloning into 'work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/gh/sveint/bamstats'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/sveint/bamstats" "work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/gh/sveint/bamstats"` [INFO] [stderr] Cloning into 'work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/gh/sveint/bamstats'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 7e79d502a15c6fabeeeb0ef2974803da91562565 [INFO] sha for GitHub repo sveint/bamstats: 7e79d502a15c6fabeeeb0ef2974803da91562565 [INFO] validating manifest of sveint/bamstats on toolchain master#c8865d8e195813ade6b84434ac9f8850e7112d1a [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of sveint/bamstats on toolchain try#e212b7d492c96d3837691ba29d32d5f468933fb8 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing sveint/bamstats [INFO] finished frobbing sveint/bamstats [INFO] frobbed toml for sveint/bamstats written to work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/gh/sveint/bamstats/Cargo.toml [INFO] started frobbing sveint/bamstats [INFO] finished frobbing sveint/bamstats [INFO] frobbed toml for sveint/bamstats written to work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/gh/sveint/bamstats/Cargo.toml [INFO] crate sveint/bamstats already has a lockfile, it will not be regenerated [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] error: the lock file /mnt/big/crater/work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/gh/sveint/bamstats/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] the lockfile is outdated, regenerating it [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] [stderr] Downloaded bio v0.27.0 [INFO] [stderr] Downloaded feature-probe v0.1.1 [INFO] [stderr] Downloaded rust-htslib v0.5.2 [INFO] [stderr] Downloaded bytecount v0.3.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] testing sveint/bamstats against try#e212b7d492c96d3837691ba29d32d5f468933fb8 for pr-61629 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-7/try#e212b7d492c96d3837691ba29d32d5f468933fb8:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/gh/sveint/bamstats:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "build" "--frozen"` [INFO] [stdout] 1250e9edde165ce498ad175d5a171f362b23f0a96b817dbacbc671bb716bd893 [INFO] running `"docker" "start" "-a" "1250e9edde165ce498ad175d5a171f362b23f0a96b817dbacbc671bb716bd893"` [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling rust-htslib v0.5.2 [INFO] [stderr] Compiling bio v0.27.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling strum v0.13.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling num-complex v0.2.1 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling strum_macros v0.13.0 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling aho-corasick v0.7.3 [INFO] [stderr] error: could not find native static library `hts`, perhaps an -L flag is missing? [INFO] [stderr] [INFO] [stderr] error: aborting due to previous error [INFO] [stderr] [INFO] [stderr] error: Could not compile `rust-htslib`. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `"docker" "inspect" "1250e9edde165ce498ad175d5a171f362b23f0a96b817dbacbc671bb716bd893"` [INFO] running `"docker" "rm" "-f" "1250e9edde165ce498ad175d5a171f362b23f0a96b817dbacbc671bb716bd893"` [INFO] [stdout] 1250e9edde165ce498ad175d5a171f362b23f0a96b817dbacbc671bb716bd893