[INFO] fetching crate yacrd 0.5.1... [INFO] extracting crate yacrd 0.5.1 into work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/yacrd/0.5.1 [INFO] extracting crate yacrd 0.5.1 into work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/yacrd/0.5.1 [INFO] validating manifest of yacrd-0.5.1 on toolchain master#c8865d8e195813ade6b84434ac9f8850e7112d1a [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of yacrd-0.5.1 on toolchain try#e212b7d492c96d3837691ba29d32d5f468933fb8 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing yacrd-0.5.1 [INFO] finished frobbing yacrd-0.5.1 [INFO] frobbed toml for yacrd-0.5.1 written to work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/yacrd/0.5.1/Cargo.toml [INFO] started frobbing yacrd-0.5.1 [INFO] finished frobbing yacrd-0.5.1 [INFO] frobbed toml for yacrd-0.5.1 written to work/ex/pr-61629/sources/try#e212b7d492c96d3837691ba29d32d5f468933fb8/reg/yacrd/0.5.1/Cargo.toml [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+e212b7d492c96d3837691ba29d32d5f468933fb8-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing yacrd-0.5.1 against master#c8865d8e195813ade6b84434ac9f8850e7112d1a for pr-61629 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-1/master#c8865d8e195813ade6b84434ac9f8850e7112d1a:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/yacrd/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "build" "--frozen"` [INFO] [stdout] 2f73854ec8d2a8f6d14ed831aeefa591bf679874d2f79cba22b7da390522b81e [INFO] running `"docker" "start" "-a" "2f73854ec8d2a8f6d14ed831aeefa591bf679874d2f79cba22b7da390522b81e"` [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling autocfg v0.1.4 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling memchr v2.2.0 [INFO] [stderr] Compiling cc v1.0.37 [INFO] [stderr] Compiling pkg-config v0.3.14 [INFO] [stderr] Compiling lazy_static v1.3.0 [INFO] [stderr] Compiling ucd-util v0.1.3 [INFO] [stderr] Compiling rawpointer v0.1.0 [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling void v1.0.2 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling either v1.5.2 [INFO] [stderr] Compiling cfg-if v0.1.9 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling bit-vec v0.4.4 [INFO] [stderr] Compiling utf8-ranges v1.0.3 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling lazy_static v0.2.11 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling unreachable v1.0.0 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling itertools v0.6.5 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling bit-set v0.4.0 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling libc v0.2.58 [INFO] [stderr] Compiling byteorder v1.3.2 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Compiling ryu v0.2.8 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling bitflags v1.1.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling bzip2-sys v0.1.7 [INFO] [stderr] Compiling lzma-sys v0.1.14 [INFO] [stderr] Compiling miniz-sys v0.1.12 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling quote v0.6.12 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling csv-core v0.1.5 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling flate2 v1.0.7 [INFO] [stderr] Compiling syn v0.15.35 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling num-complex v0.1.43 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v0.5.2 [INFO] [stderr] Compiling enum_primitive v0.1.1 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling serde_derive v1.0.92 [INFO] [stderr] Compiling serde v1.0.92 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling csv v1.0.7 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling serde_json v1.0.39 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling bio v0.21.0 [INFO] [stderr] Compiling yacrd v0.5.1 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:45:44 [INFO] [stderr] | [INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:54:52 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:78:46 [INFO] [stderr] | [INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:87:39 [INFO] [stderr] | [INFO] [stderr] 87 | fn get_compression(mut in_stream: Box) -> CompressionFormat { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:114:72 [INFO] [stderr] | [INFO] [stderr] 114 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:148:43 [INFO] [stderr] | [INFO] [stderr] 148 | fn get_writable(output_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:242:33 [INFO] [stderr] | [INFO] [stderr] 242 | let mut inputs: Vec> = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:255:29 [INFO] [stderr] | [INFO] [stderr] 255 | let mut output: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:336:29 [INFO] [stderr] | [INFO] [stderr] 336 | let mut report: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:1 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:1 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 15s [INFO] running `"docker" "inspect" "2f73854ec8d2a8f6d14ed831aeefa591bf679874d2f79cba22b7da390522b81e"` [INFO] running `"docker" "rm" "-f" "2f73854ec8d2a8f6d14ed831aeefa591bf679874d2f79cba22b7da390522b81e"` [INFO] [stdout] 2f73854ec8d2a8f6d14ed831aeefa591bf679874d2f79cba22b7da390522b81e [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-1/master#c8865d8e195813ade6b84434ac9f8850e7112d1a:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/yacrd/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "test" "--frozen" "--no-run"` [INFO] [stdout] 01fbd6a24aeb2c0df110be8bb79f75c85f3ea97417cc427d95cd07c14034d74a [INFO] running `"docker" "start" "-a" "01fbd6a24aeb2c0df110be8bb79f75c85f3ea97417cc427d95cd07c14034d74a"` [INFO] [stderr] Compiling yacrd v0.5.1 (/opt/crater/workdir) [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:45:44 [INFO] [stderr] | [INFO] [stderr] 45 | pub fn get_input(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(bare_trait_objects)] on by default [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:54:52 [INFO] [stderr] | [INFO] [stderr] 54 | pub fn get_readable_file(input_name: &str) -> (Box, CompressionFormat) { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:78:46 [INFO] [stderr] | [INFO] [stderr] 78 | pub fn get_readable(input_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:87:39 [INFO] [stderr] | [INFO] [stderr] 87 | fn get_compression(mut in_stream: Box) -> CompressionFormat { [INFO] [stderr] | ^^^^^^^^ help: use `dyn`: `dyn io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:114:72 [INFO] [stderr] | [INFO] [stderr] 114 | pub fn get_output(output_name: &str, format: CompressionFormat) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/file.rs:148:43 [INFO] [stderr] | [INFO] [stderr] 148 | fn get_writable(output_name: &str) -> Box { [INFO] [stderr] | ^^^^^^^^^ help: use `dyn`: `dyn io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:242:33 [INFO] [stderr] | [INFO] [stderr] 242 | let mut inputs: Vec> = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Read` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:255:29 [INFO] [stderr] | [INFO] [stderr] 255 | let mut output: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated [INFO] [stderr] --> src/main.rs:336:29 [INFO] [stderr] | [INFO] [stderr] 336 | let mut report: Box = file::get_output( [INFO] [stderr] | ^^^^^^^^^^^^^^ help: use `dyn`: `dyn std::io::Write` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:1 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:1 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6.36s [INFO] running `"docker" "inspect" "01fbd6a24aeb2c0df110be8bb79f75c85f3ea97417cc427d95cd07c14034d74a"` [INFO] running `"docker" "rm" "-f" "01fbd6a24aeb2c0df110be8bb79f75c85f3ea97417cc427d95cd07c14034d74a"` [INFO] [stdout] 01fbd6a24aeb2c0df110be8bb79f75c85f3ea97417cc427d95cd07c14034d74a [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-61629/worker-1/master#c8865d8e195813ade6b84434ac9f8850e7112d1a:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-61629/sources/master#c8865d8e195813ade6b84434ac9f8850e7112d1a/reg/yacrd/0.5.1:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c8865d8e195813ade6b84434ac9f8850e7112d1a-alt" "test" "--frozen"` [INFO] [stdout] 3698865f2557bc4ab0ca509786b2a9720963cb3d753a68c0ec611c53340bbd09 [INFO] running `"docker" "start" "-a" "3698865f2557bc4ab0ca509786b2a9720963cb3d753a68c0ec611c53340bbd09"` [INFO] [stderr] Blocking waiting for file lock on package cache lock [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.07s [INFO] [stderr] Running /opt/crater/target/debug/deps/yacrd-df2474e8835ec927 [INFO] [stdout] [INFO] [stdout] running 34 tests [INFO] [stdout] test file::test::compression_from_input_or_cli ... ok [INFO] [stdout] test file::test::compression_from_file ... ok [INFO] [stdout] test chimera::test::formating_gap ... ok [INFO] [stdout] test io::mhap::test::read ... ok [INFO] [stdout] test io::paf::test::write_sam_field ... ok [INFO] [stdout] test overlap::test::find_chimera_mhap_min_mers_float ... ok [INFO] [stdout] test overlap::test::find_chimera_json_output ... ok [INFO] [stdout] test overlap::test::find_chimera ... ok [INFO] [stdout] test io::paf::test::read ... ok [INFO] [stdout] test io::paf::test::write ... ok [INFO] [stdout] test overlap::test::find_not_covered ... ok [INFO] [stdout] test overlap::test::mapping2read2mapping ... ok [INFO] [stdout] test overlap::test::find_chimera_report_all ... ok [INFO] [stdout] test overlap::test::notcovered_overlap_extremity ... ok [INFO] [stdout] test overlap::test::find_chimera_cov_1 ... ok [INFO] [stdout] test postdetection::fasta::test::extracted ... ok [INFO] [stdout] test overlap::test::notcovered_prior_to_chimera ... ok [INFO] [stdout] test postdetection::fasta::test::filtred ... ok [INFO] [stdout] test postdetection::fasta::test::split ... ok [INFO] [stdout] test io::paf::test::read_sam_field ... ok [INFO] [stdout] test postdetection::fasta::test::fasta_shorter_than_position ... ok [INFO] [stdout] test postdetection::fastq::test::extracted ... ok [INFO] [stdout] test postdetection::fasta::test::split_all ... ok [INFO] [stdout] test postdetection::fastq::test::fastq ... ok [INFO] [stdout] test postdetection::fastq::test::filtred ... ok [INFO] [stdout] test postdetection::mhap::test::filtred ... ok [INFO] [stdout] test utils::test::filename_mapping_only ... ok [INFO] [stdout] test postdetection::paf::test::extracted ... ok [INFO] [stdout] test utils::test::filename_based_compressed ... ok [INFO] [stdout] test utils::test::filename_based ... ok [INFO] [stdout] test postdetection::test::out_name ... ok [INFO] [stdout] test postdetection::paf::test::filtred ... ok [INFO] [stdout] test io::mhap::test::write ... FAILED [INFO] [stdout] test postdetection::mhap::test::extracted ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- io::mhap::test::write stdout ---- [INFO] [stdout] thread 'io::mhap::test::write' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[49, 32, 50, 32, 48, 46, 49, 32, 50, 46, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 10, 49, 32, 51, 32, 48, 46, 49, 32, 50, 46, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 10]`, [INFO] [stdout] right: `[49, 32, 50, 32, 48, 46, 49, 32, 50, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 10, 49, 32, 51, 32, 48, 46, 49, 32, 50, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 10]`', src/io/mhap.rs:229:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x56077aae914b - backtrace::backtrace::libunwind::trace::hcbf63b8d794b15f4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/libunwind.rs:88 [INFO] [stdout] 1: 0x56077aae914b - backtrace::backtrace::trace_unsynchronized::h681e1cb201a9972d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x56077aae914b - std::sys_common::backtrace::_print::hd27175ce39811176 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stdout] 3: 0x56077aae914b - std::sys_common::backtrace::print::h117e2eebf9a1e122 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stdout] 4: 0x56077aae914b - std::panicking::default_hook::{{closure}}::h6369b988ee675335 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 5: 0x56077aae8ddf - std::panicking::default_hook::hfaefd2bea4c25f9e [INFO] [stdout] at src/libstd/panicking.rs:209 [INFO] [stdout] 6: 0x56077aae98c0 - std::panicking::rust_panic_with_hook::h02c52718165ccced [INFO] [stdout] at src/libstd/panicking.rs:475 [INFO] [stdout] 7: 0x56077aae9442 - std::panicking::continue_panic_fmt::h9e135674c1df51b4 [INFO] [stdout] at src/libstd/panicking.rs:382 [INFO] [stdout] 8: 0x56077aae938f - std::panicking::begin_panic_fmt::h7b7b130b87f3cbeb [INFO] [stdout] at src/libstd/panicking.rs:337 [INFO] [stdout] 9: 0x56077a9cc2d8 - yacrd::io::mhap::test::write::h23d10cbcb4adb6cc [INFO] [stdout] at src/io/mhap.rs:229 [INFO] [stdout] 10: 0x56077a9cbdea - yacrd::io::mhap::test::write::{{closure}}::h9ddb6bab24edc366 [INFO] [stdout] at src/io/mhap.rs:220 [INFO] [stdout] 11: 0x56077a9e29fe - core::ops::function::FnOnce::call_once::h95529b0c15ac2092 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libcore/ops/function.rs:231 [INFO] [stdout] 12: 0x56077aa24d6f - as core::ops::function::FnOnce>::call_once::h051e7835d417eabd [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 13: 0x56077aaec79a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 14: 0x56077aa3f748 - std::panicking::try::h2a4c737ee7913c25 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:273 [INFO] [stdout] 15: 0x56077aa3f748 - std::panic::catch_unwind::hb4a850da3c0f461d [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:388 [INFO] [stdout] 16: 0x56077aa3f748 - test::run_test::run_test_inner::{{closure}}::hf1081f8a70de250d [INFO] [stdout] at src/libtest/lib.rs:1466 [INFO] [stdout] 17: 0x56077aa1a2e5 - std::sys_common::backtrace::__rust_begin_short_backtrace::h342b596609fb99e3 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/sys_common/backtrace.rs:77 [INFO] [stdout] 18: 0x56077aa1e275 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h513520560543c60c [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/thread/mod.rs:470 [INFO] [stdout] 19: 0x56077aa1e275 - as core::ops::function::FnOnce<()>>::call_once::ha4e1c61c6177bb54 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:309 [INFO] [stdout] 20: 0x56077aa1e275 - std::panicking::try::do_call::h0eb4a0e045c14646 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:294 [INFO] [stdout] 21: 0x56077aaec79a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 22: 0x56077aa1e892 - std::panicking::try::h20774757cea1a66c [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:273 [INFO] [stdout] 23: 0x56077aa1e892 - std::panic::catch_unwind::h38e40a373c8b5452 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:388 [INFO] [stdout] 24: 0x56077aa1e892 - std::thread::Builder::spawn_unchecked::{{closure}}::h9bfd91224a2fd035 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/thread/mod.rs:469 [INFO] [stdout] 25: 0x56077aa1e892 - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2d3b3105bb1d7d1 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libcore/ops/function.rs:231 [INFO] [stdout] 26: 0x56077aadef4f - as core::ops::function::FnOnce>::call_once::hc6099fbe1f2e9038 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 27: 0x56077aaebbc0 - as core::ops::function::FnOnce>::call_once::h1b61db05dcd8ce54 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 28: 0x56077aaebbc0 - std::sys_common::thread::start_thread::hd3ed9053e9fea488 [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] 29: 0x56077aaebbc0 - std::sys::unix::thread::Thread::new::thread_start::hc17e4e4c7ed2fc8f [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 30: 0x7f5669a0b4a4 - start_thread [INFO] [stdout] 31: 0x7f5669536d0f - __clone [INFO] [stdout] 32: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- postdetection::mhap::test::extracted stdout ---- [INFO] [stdout] thread 'postdetection::mhap::test::extracted' panicked at 'assertion failed: `(left == right)` [INFO] [stdout] left: `[49, 32, 50, 32, 48, 46, 49, 32, 50, 46, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 10, 49, 32, 51, 32, 48, 46, 49, 32, 50, 46, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 10]`, [INFO] [stdout] right: `[49, 32, 50, 32, 48, 46, 49, 32, 50, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 10, 49, 32, 51, 32, 48, 46, 49, 32, 50, 32, 48, 32, 53, 53, 48, 32, 57, 48, 48, 32, 49, 48, 48, 48, 32, 48, 32, 49, 48, 48, 32, 52, 53, 48, 32, 49, 48, 48, 48, 10]`', src/postdetection/mhap.rs:169:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x56077aae914b - backtrace::backtrace::libunwind::trace::hcbf63b8d794b15f4 [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/libunwind.rs:88 [INFO] [stdout] 1: 0x56077aae914b - backtrace::backtrace::trace_unsynchronized::h681e1cb201a9972d [INFO] [stdout] at /cargo/registry/src/github.com-1ecc6299db9ec823/backtrace-0.3.29/src/backtrace/mod.rs:66 [INFO] [stdout] 2: 0x56077aae914b - std::sys_common::backtrace::_print::hd27175ce39811176 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:47 [INFO] [stdout] 3: 0x56077aae914b - std::sys_common::backtrace::print::h117e2eebf9a1e122 [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:36 [INFO] [stdout] 4: 0x56077aae914b - std::panicking::default_hook::{{closure}}::h6369b988ee675335 [INFO] [stdout] at src/libstd/panicking.rs:198 [INFO] [stdout] 5: 0x56077aae8ddf - std::panicking::default_hook::hfaefd2bea4c25f9e [INFO] [stdout] at src/libstd/panicking.rs:209 [INFO] [stdout] 6: 0x56077aae98c0 - std::panicking::rust_panic_with_hook::h02c52718165ccced [INFO] [stdout] at src/libstd/panicking.rs:475 [INFO] [stdout] 7: 0x56077aae9442 - std::panicking::continue_panic_fmt::h9e135674c1df51b4 [INFO] [stdout] at src/libstd/panicking.rs:382 [INFO] [stdout] 8: 0x56077aae938f - std::panicking::begin_panic_fmt::h7b7b130b87f3cbeb [INFO] [stdout] at src/libstd/panicking.rs:337 [INFO] [stdout] 9: 0x56077a9aab8e - yacrd::postdetection::mhap::test::extracted::hbf97b1df2469d703 [INFO] [stdout] at src/postdetection/mhap.rs:169 [INFO] [stdout] 10: 0x56077a9aa54a - yacrd::postdetection::mhap::test::extracted::{{closure}}::h4a30c0d33da0d8db [INFO] [stdout] at src/postdetection/mhap.rs:154 [INFO] [stdout] 11: 0x56077a9e2abe - core::ops::function::FnOnce::call_once::h9664d7067c863d66 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libcore/ops/function.rs:231 [INFO] [stdout] 12: 0x56077aa24d6f - as core::ops::function::FnOnce>::call_once::h051e7835d417eabd [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 13: 0x56077aaec79a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 14: 0x56077aa3f748 - std::panicking::try::h2a4c737ee7913c25 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:273 [INFO] [stdout] 15: 0x56077aa3f748 - std::panic::catch_unwind::hb4a850da3c0f461d [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:388 [INFO] [stdout] 16: 0x56077aa3f748 - test::run_test::run_test_inner::{{closure}}::hf1081f8a70de250d [INFO] [stdout] at src/libtest/lib.rs:1466 [INFO] [stdout] 17: 0x56077aa1a2e5 - std::sys_common::backtrace::__rust_begin_short_backtrace::h342b596609fb99e3 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/sys_common/backtrace.rs:77 [INFO] [stdout] 18: 0x56077aa1e275 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h513520560543c60c [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/thread/mod.rs:470 [INFO] [stdout] 19: 0x56077aa1e275 - as core::ops::function::FnOnce<()>>::call_once::ha4e1c61c6177bb54 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:309 [INFO] [stdout] 20: 0x56077aa1e275 - std::panicking::try::do_call::h0eb4a0e045c14646 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:294 [INFO] [stdout] 21: 0x56077aaec79a - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:85 [INFO] [stdout] 22: 0x56077aa1e892 - std::panicking::try::h20774757cea1a66c [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panicking.rs:273 [INFO] [stdout] 23: 0x56077aa1e892 - std::panic::catch_unwind::h38e40a373c8b5452 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/panic.rs:388 [INFO] [stdout] 24: 0x56077aa1e892 - std::thread::Builder::spawn_unchecked::{{closure}}::h9bfd91224a2fd035 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libstd/thread/mod.rs:469 [INFO] [stdout] 25: 0x56077aa1e892 - core::ops::function::FnOnce::call_once{{vtable.shim}}::ha2d3b3105bb1d7d1 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/libcore/ops/function.rs:231 [INFO] [stdout] 26: 0x56077aadef4f - as core::ops::function::FnOnce>::call_once::hc6099fbe1f2e9038 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 27: 0x56077aaebbc0 - as core::ops::function::FnOnce>::call_once::h1b61db05dcd8ce54 [INFO] [stdout] at /rustc/c8865d8e195813ade6b84434ac9f8850e7112d1a/src/liballoc/boxed.rs:746 [INFO] [stdout] 28: 0x56077aaebbc0 - std::sys_common::thread::start_thread::hd3ed9053e9fea488 [INFO] [stdout] at src/libstd/sys_common/thread.rs:13 [INFO] [stdout] 29: 0x56077aaebbc0 - std::sys::unix::thread::Thread::new::thread_start::hc17e4e4c7ed2fc8f [INFO] [stdout] at src/libstd/sys/unix/thread.rs:79 [INFO] [stdout] 30: 0x7f5669a0b4a4 - start_thread [INFO] [stdout] 31: 0x7f5669536d0f - __clone [INFO] [stdout] 32: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] io::mhap::test::write [INFO] [stdout] postdetection::mhap::test::extracted [INFO] [stdout] [INFO] [stdout] test result: FAILED. 32 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin yacrd' [INFO] running `"docker" "inspect" "3698865f2557bc4ab0ca509786b2a9720963cb3d753a68c0ec611c53340bbd09"` [INFO] running `"docker" "rm" "-f" "3698865f2557bc4ab0ca509786b2a9720963cb3d753a68c0ec611c53340bbd09"` [INFO] [stdout] 3698865f2557bc4ab0ca509786b2a9720963cb3d753a68c0ec611c53340bbd09