[INFO] updating cached repository natir/yacrd [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/natir/yacrd [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/natir/yacrd" "work/ex/pr-61100/sources/master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504/gh/natir/yacrd"` [INFO] [stderr] Cloning into 'work/ex/pr-61100/sources/master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504/gh/natir/yacrd'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/natir/yacrd" "work/ex/pr-61100/sources/try#58b21121d0b447ceb3f1a655155d802191acf044/gh/natir/yacrd"` [INFO] [stderr] Cloning into 'work/ex/pr-61100/sources/try#58b21121d0b447ceb3f1a655155d802191acf044/gh/natir/yacrd'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 6e6f8abda601a192de50f924298d981116849bf2 [INFO] sha for GitHub repo natir/yacrd: 6e6f8abda601a192de50f924298d981116849bf2 [INFO] validating manifest of natir/yacrd on toolchain master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504 [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+8869ee03d7f258e1b76a11c6fbb01b5708a9f504-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of natir/yacrd on toolchain try#58b21121d0b447ceb3f1a655155d802191acf044 [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+58b21121d0b447ceb3f1a655155d802191acf044-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing natir/yacrd [INFO] finished frobbing natir/yacrd [INFO] frobbed toml for natir/yacrd written to work/ex/pr-61100/sources/master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504/gh/natir/yacrd/Cargo.toml [INFO] started frobbing natir/yacrd [INFO] finished frobbing natir/yacrd [INFO] frobbed toml for natir/yacrd written to work/ex/pr-61100/sources/try#58b21121d0b447ceb3f1a655155d802191acf044/gh/natir/yacrd/Cargo.toml [INFO] crate natir/yacrd already has a lockfile, it will not be regenerated [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+8869ee03d7f258e1b76a11c6fbb01b5708a9f504-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+58b21121d0b447ceb3f1a655155d802191acf044-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking natir/yacrd against master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504 for pr-61100 [INFO] running `"docker" "create" "-v" "/mnt/crater-raid/crater/work/local/target-dirs/pr-61100/worker-1/master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504:/opt/crater/target:rw,Z" "-v" "/mnt/crater-raid/crater/work/ex/pr-61100/sources/master#8869ee03d7f258e1b76a11c6fbb01b5708a9f504/gh/natir/yacrd:/opt/crater/workdir:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+8869ee03d7f258e1b76a11c6fbb01b5708a9f504-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] e0eb3b78fe6ab84f6554ddc10d24622b1e3fdecb33f0f4855287ea8a4a2da18e [INFO] running `"docker" "start" "-a" "e0eb3b78fe6ab84f6554ddc10d24622b1e3fdecb33f0f4855287ea8a4a2da18e"` [INFO] [stderr] Compiling ndarray v0.9.1 [INFO] [stderr] Compiling bv v0.7.4 [INFO] [stderr] Compiling filetime v0.2.1 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Checking itertools-num v0.1.2 [INFO] [stderr] Compiling syn v0.15.9 [INFO] [stderr] Checking csv-core v0.1.4 [INFO] [stderr] Checking enum_primitive v0.1.1 [INFO] [stderr] Checking flate2 v1.0.3 [INFO] [stderr] Compiling lzma-sys v0.1.10 [INFO] [stderr] Checking xz2 v0.1.5 [INFO] [stderr] Compiling serde_derive v1.0.79 [INFO] [stderr] Checking serde v1.0.79 [INFO] [stderr] Checking csv v1.0.2 [INFO] [stderr] Checking vec_map v0.8.1 [INFO] [stderr] Checking multimap v0.4.0 [INFO] [stderr] Checking serde_json v1.0.32 [INFO] [stderr] Checking clap v2.32.0 [INFO] [stderr] Checking bio v0.21.0 [INFO] [stderr] Checking yacrd v0.5.1 (/opt/crater/workdir) [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:1 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:1 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:322:13 [INFO] [stderr] | [INFO] [stderr] 322 | let mut format = [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:325:13 [INFO] [stderr] | [INFO] [stderr] 325 | let mut raw_path = scrubbing_matches.value_of("sequence").unwrap(); [INFO] [stderr] | ----^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:326:13 [INFO] [stderr] | [INFO] [stderr] 326 | let mut scrubbed_path = scrubbing_matches.value_of("scrubbed").unwrap(); [INFO] [stderr] | ----^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `Check` [INFO] [stderr] --> src/chimera.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | Check, [INFO] [stderr] | ^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_formats` [INFO] [stderr] --> src/utils.rs:56:1 [INFO] [stderr] | [INFO] [stderr] 56 | pub fn get_sequence_formats(matches: &clap::ArgMatches, formats: &mut Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_sequence_format` [INFO] [stderr] --> src/utils.rs:83:1 [INFO] [stderr] | [INFO] [stderr] 83 | pub fn get_sequence_format(filename: &str) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 46.62s [INFO] running `"docker" "inspect" "e0eb3b78fe6ab84f6554ddc10d24622b1e3fdecb33f0f4855287ea8a4a2da18e"` [INFO] running `"docker" "rm" "-f" "e0eb3b78fe6ab84f6554ddc10d24622b1e3fdecb33f0f4855287ea8a4a2da18e"` [INFO] [stdout] e0eb3b78fe6ab84f6554ddc10d24622b1e3fdecb33f0f4855287ea8a4a2da18e