[INFO] updating cached repository wheaton5/long_read_binner
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/wheaton5/long_read_binner
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/long_read_binner" "work/ex/pr-60932/sources/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4/gh/wheaton5/long_read_binner"`
[INFO] [stderr] Cloning into 'work/ex/pr-60932/sources/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4/gh/wheaton5/long_read_binner'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/wheaton5/long_read_binner" "work/ex/pr-60932/sources/try#097e26225c5cc28d3042ad4c80eac7c488f78ee7/gh/wheaton5/long_read_binner"`
[INFO] [stderr] Cloning into 'work/ex/pr-60932/sources/try#097e26225c5cc28d3042ad4c80eac7c488f78ee7/gh/wheaton5/long_read_binner'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] e72d4e667fc1c4e41b1616f1924744f0d4e76bd7
[INFO] sha for GitHub repo wheaton5/long_read_binner: e72d4e667fc1c4e41b1616f1924744f0d4e76bd7
[INFO] validating manifest of wheaton5/long_read_binner on toolchain master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+548add7f61bfcbe3bea3f5ccefb53c84da8fefe4-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of wheaton5/long_read_binner on toolchain try#097e26225c5cc28d3042ad4c80eac7c488f78ee7
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+097e26225c5cc28d3042ad4c80eac7c488f78ee7-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing wheaton5/long_read_binner
[INFO] finished frobbing wheaton5/long_read_binner
[INFO] frobbed toml for wheaton5/long_read_binner written to work/ex/pr-60932/sources/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4/gh/wheaton5/long_read_binner/Cargo.toml
[INFO] started frobbing wheaton5/long_read_binner
[INFO] finished frobbing wheaton5/long_read_binner
[INFO] frobbed toml for wheaton5/long_read_binner written to work/ex/pr-60932/sources/try#097e26225c5cc28d3042ad4c80eac7c488f78ee7/gh/wheaton5/long_read_binner/Cargo.toml
[INFO] crate wheaton5/long_read_binner already has a lockfile, it will not be regenerated
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+548add7f61bfcbe3bea3f5ccefb53c84da8fefe4-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr] error: the lock file /mnt/crater-raid/crater/work/ex/pr-60932/sources/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4/gh/wheaton5/long_read_binner/Cargo.lock needs to be updated but --locked was passed to prevent this
[INFO] the lockfile is outdated, regenerating it
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+548add7f61bfcbe3bea3f5ccefb53c84da8fefe4-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn.git`
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-boomphf`
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+097e26225c5cc28d3042ad4c80eac7c488f78ee7-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-debruijn.git`
[INFO] [stderr]     Updating git repository `https://github.com/wheaton5/dna_io.git`
[INFO] [stderr]     Updating git repository `https://github.com/10XGenomics/rust-boomphf`
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+548add7f61bfcbe3bea3f5ccefb53c84da8fefe4-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+097e26225c5cc28d3042ad4c80eac7c488f78ee7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] [stderr]     Blocking waiting for file lock on package cache lock
[INFO] checking wheaton5/long_read_binner against master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4 for pr-60932
[INFO] running `"docker" "create" "-v" "/mnt/crater-raid/crater/work/local/target-dirs/pr-60932/worker-1/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4:/opt/crater/target:rw,Z" "-v" "/mnt/crater-raid/crater/work/ex/pr-60932/sources/master#548add7f61bfcbe3bea3f5ccefb53c84da8fefe4/gh/wheaton5/long_read_binner:/opt/crater/workdir:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+548add7f61bfcbe3bea3f5ccefb53c84da8fefe4-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 071f41a4e2ac3f2c4c44b212d512e944b9d310ced05ae16cd973871812eff50c
[INFO] running `"docker" "start" "-a" "071f41a4e2ac3f2c4c44b212d512e944b9d310ced05ae16cd973871812eff50c"`
[INFO] [stderr]    Compiling rustc-demangle v0.1.14
[INFO] [stderr]    Compiling ansi_term v0.9.0
[INFO] [stderr]    Compiling strsim v0.6.0
[INFO] [stderr]    Compiling bindgen v0.49.1
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]    Compiling serde v1.0.91
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking spin v0.4.10
[INFO] [stderr]    Compiling bzip2-sys v0.1.7
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling clang-sys v0.28.0
[INFO] [stderr]    Compiling log v0.4.6
[INFO] [stderr]    Compiling fs-utils v1.1.1
[INFO] [stderr]    Compiling textwrap v0.9.0
[INFO] [stderr]     Checking crossbeam-utils v0.6.5
[INFO] [stderr]    Compiling lzma-sys v0.1.14
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling byteorder v1.3.1
[INFO] [stderr]     Checking concurrent-hashmap v0.2.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking crc32fast v1.2.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.28
[INFO] [stderr]     Checking rand v0.5.6
[INFO] [stderr]     Checking clap v2.27.1
[INFO] [stderr]     Checking crossbeam-epoch v0.7.1
[INFO] [stderr]     Checking crossbeam-queue v0.1.2
[INFO] [stderr]     Checking crossbeam-channel v0.3.8
[INFO] [stderr]    Compiling env_logger v0.6.1
[INFO] [stderr]     Checking flate2 v1.0.7
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling backtrace v0.3.18
[INFO] [stderr]     Checking crossbeam-deque v0.7.1
[INFO] [stderr]     Checking crossbeam v0.7.1
[INFO] [stderr]    Compiling failure v0.1.5
[INFO] [stderr]    Compiling which v2.0.1
[INFO] [stderr]    Compiling cexpr v0.3.5
[INFO] [stderr]     Checking bio-types v0.5.1
[INFO] [stderr]     Checking serde_json v1.0.39
[INFO] [stderr]     Checking boomphf v0.4.0 (https://github.com/10XGenomics/rust-boomphf#5335194a)
[INFO] [stderr]     Checking debruijn v0.2.0 (https://github.com/10XGenomics/rust-debruijn.git#bdd2ac0c)
[INFO] [stderr]    Compiling rust-htslib v0.23.0
[INFO] [stderr]     Checking dna_io v0.1.0 (https://github.com/wheaton5/dna_io.git#d13e5660)
[INFO] [stderr]     Checking long_read_binner v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/main.rs:50:13
[INFO] [stderr]    |
[INFO] [stderr] 50 |         let mut reader = dna_io::DnaReader::from_path(input);
[INFO] [stderr]    |             ----^^^^^^
[INFO] [stderr]    |             |
[INFO] [stderr]    |             help: remove this `mut`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_mut)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:100:13
[INFO] [stderr]     |
[INFO] [stderr] 100 |         let mut file = BufReader::new(&f);
[INFO] [stderr]     |             ----^^^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]   --> src/main.rs:50:13
[INFO] [stderr]    |
[INFO] [stderr] 50 |         let mut reader = dna_io::DnaReader::from_path(input);
[INFO] [stderr]    |             ----^^^^^^
[INFO] [stderr]    |             |
[INFO] [stderr]    |             help: remove this `mut`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_mut)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/main.rs:100:13
[INFO] [stderr]     |
[INFO] [stderr] 100 |         let mut file = BufReader::new(&f);
[INFO] [stderr]     |             ----^^^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 59s
[INFO] running `"docker" "inspect" "071f41a4e2ac3f2c4c44b212d512e944b9d310ced05ae16cd973871812eff50c"`
[INFO] running `"docker" "rm" "-f" "071f41a4e2ac3f2c4c44b212d512e944b9d310ced05ae16cd973871812eff50c"`
[INFO] [stdout] 071f41a4e2ac3f2c4c44b212d512e944b9d310ced05ae16cd973871812eff50c