[INFO] updating cached repository TuBieJun/consensus [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/TuBieJun/consensus [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/consensus" "work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/gh/TuBieJun/consensus"` [INFO] [stderr] Cloning into 'work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/gh/TuBieJun/consensus'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/TuBieJun/consensus" "work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/gh/TuBieJun/consensus"` [INFO] [stderr] Cloning into 'work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/gh/TuBieJun/consensus'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] c40ebfab0e62be16d5d1c67214244e4f6e3edaec [INFO] sha for GitHub repo TuBieJun/consensus: c40ebfab0e62be16d5d1c67214244e4f6e3edaec [INFO] validating manifest of TuBieJun/consensus on toolchain master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7 [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of TuBieJun/consensus on toolchain try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing TuBieJun/consensus [INFO] finished frobbing TuBieJun/consensus [INFO] frobbed toml for TuBieJun/consensus written to work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/gh/TuBieJun/consensus/Cargo.toml [INFO] started frobbing TuBieJun/consensus [INFO] finished frobbing TuBieJun/consensus [INFO] frobbed toml for TuBieJun/consensus written to work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/gh/TuBieJun/consensus/Cargo.toml [INFO] crate TuBieJun/consensus already has a lockfile, it will not be regenerated [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking TuBieJun/consensus against try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b for pr-59199 [INFO] running `"docker" "create" "-v" "/mnt/crater-raid/crater/work/local/target-dirs/pr-59199/worker-0/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b:/opt/crater/target:rw,Z" "-v" "/mnt/crater-raid/crater/work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/gh/TuBieJun/consensus:/opt/crater/workdir:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 16d56c1d372a57cff51e22b535ed5bac9dfeac5572944d29bf4d5cdc1b687c55 [INFO] running `"docker" "start" "-a" "16d56c1d372a57cff51e22b535ed5bac9dfeac5572944d29bf4d5cdc1b687c55"` [INFO] [stderr] Compiling quick-error v1.2.1 [INFO] [stderr] Checking ieee754 v0.2.2 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking itertools v0.6.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling fs-utils v1.0.0 [INFO] [stderr] Compiling rust-htslib v0.15.0 [INFO] [stderr] Checking consensus v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `std::env` [INFO] [stderr] --> src/main.rs:12:5 [INFO] [stderr] | [INFO] [stderr] 12 | use std::env; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `rust_htslib::prelude::*` [INFO] [stderr] --> src/main.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use rust_htslib::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io` [INFO] [stderr] --> src/main.rs:21:5 [INFO] [stderr] | [INFO] [stderr] 21 | use std::io; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `PathBuf` [INFO] [stderr] --> src/main.rs:25:23 [INFO] [stderr] | [INFO] [stderr] 25 | use std::path::{Path, PathBuf}; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:26:22 [INFO] [stderr] | [INFO] [stderr] 26 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:218:20 [INFO] [stderr] | [INFO] [stderr] 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_parens)] on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:239:16 [INFO] [stderr] | [INFO] [stderr] 239 | if (baseEach_percent_record.len() > 0) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::env` [INFO] [stderr] --> src/main.rs:12:5 [INFO] [stderr] | [INFO] [stderr] 12 | use std::env; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `rust_htslib::prelude::*` [INFO] [stderr] --> src/main.rs:16:5 [INFO] [stderr] | [INFO] [stderr] 16 | use rust_htslib::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io` [INFO] [stderr] --> src/main.rs:21:5 [INFO] [stderr] | [INFO] [stderr] 21 | use std::io; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `PathBuf` [INFO] [stderr] --> src/main.rs:25:23 [INFO] [stderr] | [INFO] [stderr] 25 | use std::path::{Path, PathBuf}; [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `SubCommand` [INFO] [stderr] --> src/main.rs:26:22 [INFO] [stderr] | [INFO] [stderr] 26 | use clap::{Arg, App, SubCommand}; [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:218:20 [INFO] [stderr] | [INFO] [stderr] 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_parens)] on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around `if` condition [INFO] [stderr] --> src/main.rs:239:16 [INFO] [stderr] | [INFO] [stderr] 239 | if (baseEach_percent_record.len() > 0) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io::prelude` [INFO] [stderr] --> src/main.rs:22:5 [INFO] [stderr] | [INFO] [stderr] 22 | use std::io::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_base` [INFO] [stderr] --> src/main.rs:139:9 [INFO] [stderr] | [INFO] [stderr] 139 | let consensus_base:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_base` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_source_reads` [INFO] [stderr] --> src/main.rs:144:13 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_source_reads` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chrom` [INFO] [stderr] --> src/main.rs:283:121 [INFO] [stderr] | [INFO] [stderr] 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_chrom` [INFO] [stderr] [INFO] [stderr] warning: value assigned to `new_seq_b` is never read [INFO] [stderr] --> src/main.rs:370:21 [INFO] [stderr] | [INFO] [stderr] 370 | let mut new_seq_b:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_assignments)] on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::io::prelude` [INFO] [stderr] --> src/main.rs:22:5 [INFO] [stderr] | [INFO] [stderr] 22 | use std::io::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_base` [INFO] [stderr] --> src/main.rs:139:9 [INFO] [stderr] | [INFO] [stderr] 139 | let consensus_base:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_base` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused variable: `consensus_source_reads` [INFO] [stderr] --> src/main.rs:144:13 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^ help: consider prefixing with an underscore: `_consensus_source_reads` [INFO] [stderr] [INFO] [stderr] warning: unused variable: `chrom` [INFO] [stderr] --> src/main.rs:283:121 [INFO] [stderr] | [INFO] [stderr] 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_chrom` [INFO] [stderr] [INFO] [stderr] warning: value assigned to `new_seq_b` is never read [INFO] [stderr] --> src/main.rs:370:21 [INFO] [stderr] | [INFO] [stderr] 370 | let mut new_seq_b:Vec = Vec::new(); [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_assignments)] on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | let mut pair; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | let mut strand; [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:76:9 [INFO] [stderr] | [INFO] [stderr] 76 | let mut aln_pos; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:74:9 [INFO] [stderr] | [INFO] [stderr] 74 | let mut pair; [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:75:9 [INFO] [stderr] | [INFO] [stderr] 75 | let mut strand; [INFO] [stderr] | ----^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:76:9 [INFO] [stderr] | [INFO] [stderr] 76 | let mut aln_pos; [INFO] [stderr] | ----^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:144:9 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:151:9 [INFO] [stderr] | [INFO] [stderr] 151 | let mut top_cigar:&CigarStringView; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:338:9 [INFO] [stderr] | [INFO] [stderr] 338 | let mut need_trim:bool; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:355:9 [INFO] [stderr] | [INFO] [stderr] 355 | let mut chrom = 0; [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `bamLineParse` should have a snake case name [INFO] [stderr] --> src/main.rs:68:4 [INFO] [stderr] | [INFO] [stderr] 68 | fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `bam_line_parse` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(non_snake_case)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_num_record` should have a snake case name [INFO] [stderr] --> src/main.rs:147:13 [INFO] [stderr] | [INFO] [stderr] 147 | let mut baseEach_num_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_num_record` [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_percent_record` should have a snake case name [INFO] [stderr] --> src/main.rs:148:13 [INFO] [stderr] | [INFO] [stderr] 148 | let mut baseEach_percent_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_percent_record` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:267:9 [INFO] [stderr] | [INFO] [stderr] 267 | o_buff.write(&member_record.2); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_must_use)] on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:269:9 [INFO] [stderr] | [INFO] [stderr] 269 | o_buff.write(&member_record.0); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:272:9 [INFO] [stderr] | [INFO] [stderr] 272 | o_buff.write(&real_qual_temp); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:274:5 [INFO] [stderr] | [INFO] [stderr] 274 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:277:5 [INFO] [stderr] | [INFO] [stderr] 277 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:280:5 [INFO] [stderr] | [INFO] [stderr] 280 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:286:10 [INFO] [stderr] | [INFO] [stderr] 286 | for (key_dupGroup, pair_dup) in pd.iter() { [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `position_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:357:13 [INFO] [stderr] | [INFO] [stderr] 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `position_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:387:17 [INFO] [stderr] | [INFO] [stderr] 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:144:9 [INFO] [stderr] | [INFO] [stderr] 144 | let mut consensus_source_reads = String::new(); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:151:9 [INFO] [stderr] | [INFO] [stderr] 151 | let mut top_cigar:&CigarStringView; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:338:9 [INFO] [stderr] | [INFO] [stderr] 338 | let mut need_trim:bool; [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:355:9 [INFO] [stderr] | [INFO] [stderr] 355 | let mut chrom = 0; [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: function `bamLineParse` should have a snake case name [INFO] [stderr] --> src/main.rs:68:4 [INFO] [stderr] | [INFO] [stderr] 68 | fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `bam_line_parse` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(non_snake_case)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_num_record` should have a snake case name [INFO] [stderr] --> src/main.rs:147:13 [INFO] [stderr] | [INFO] [stderr] 147 | let mut baseEach_num_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_num_record` [INFO] [stderr] [INFO] [stderr] warning: variable `baseEach_percent_record` should have a snake case name [INFO] [stderr] --> src/main.rs:148:13 [INFO] [stderr] | [INFO] [stderr] 148 | let mut baseEach_percent_record = String::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `base_each_percent_record` [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:267:9 [INFO] [stderr] | [INFO] [stderr] 267 | o_buff.write(&member_record.2); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_must_use)] on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:269:9 [INFO] [stderr] | [INFO] [stderr] 269 | o_buff.write(&member_record.0); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:272:9 [INFO] [stderr] | [INFO] [stderr] 272 | o_buff.write(&real_qual_temp); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:274:5 [INFO] [stderr] | [INFO] [stderr] 274 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:277:5 [INFO] [stderr] | [INFO] [stderr] 277 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `std::result::Result` that must be used [INFO] [stderr] --> src/main.rs:280:5 [INFO] [stderr] | [INFO] [stderr] 280 | o_buff.write(b"\n"); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:286:10 [INFO] [stderr] | [INFO] [stderr] 286 | for (key_dupGroup, pair_dup) in pd.iter() { [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `position_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:357:13 [INFO] [stderr] | [INFO] [stderr] 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `position_dup_group` [INFO] [stderr] [INFO] [stderr] warning: variable `key_dupGroup` should have a snake case name [INFO] [stderr] --> src/main.rs:387:17 [INFO] [stderr] | [INFO] [stderr] 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `key_dup_group` [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 37.04s [INFO] running `"docker" "inspect" "16d56c1d372a57cff51e22b535ed5bac9dfeac5572944d29bf4d5cdc1b687c55"` [INFO] running `"docker" "rm" "-f" "16d56c1d372a57cff51e22b535ed5bac9dfeac5572944d29bf4d5cdc1b687c55"` [INFO] [stdout] 16d56c1d372a57cff51e22b535ed5bac9dfeac5572944d29bf4d5cdc1b687c55