[INFO] crate bio 0.24.0 is already in cache [INFO] extracting crate bio 0.24.0 into work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/reg/bio/0.24.0 [INFO] extracting crate bio 0.24.0 into work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/reg/bio/0.24.0 [INFO] validating manifest of bio-0.24.0 on toolchain master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7 [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of bio-0.24.0 on toolchain try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing bio-0.24.0 [INFO] finished frobbing bio-0.24.0 [INFO] frobbed toml for bio-0.24.0 written to work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/reg/bio/0.24.0/Cargo.toml [INFO] started frobbing bio-0.24.0 [INFO] finished frobbing bio-0.24.0 [INFO] frobbed toml for bio-0.24.0 written to work/ex/pr-59199/sources/try#68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b/reg/bio/0.24.0/Cargo.toml [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"` [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/crater-raid/crater/work/local/cargo-home/bin/cargo" "+68fcf881bd1e4dbfc21e22f8c7a56b8a5d8e8f7b-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] checking bio-0.24.0 against master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7 for pr-59199 [INFO] running `"docker" "create" "-v" "/mnt/crater-raid/crater/work/local/target-dirs/pr-59199/worker-4/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7:/opt/crater/target:rw,Z" "-v" "/mnt/crater-raid/crater/work/ex/pr-59199/sources/master#bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7/reg/bio/0.24.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/crater-raid/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+bc44841ad2a2ad5f6c5e67b9e35ed8e7e71d4dc7-alt" "check" "--frozen" "--all" "--all-targets"` [INFO] [stdout] 18a499efd89dab721d81af4cd78cde7df34405959a0efb0de65e0ce27667e921 [INFO] running `"docker" "start" "-a" "18a499efd89dab721d81af4cd78cde7df34405959a0efb0de65e0ce27667e921"` [INFO] [stderr] Compiling bio v0.24.0 (/opt/crater/workdir) [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Checking bio-types v0.4.0 [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/pattern_matching/pssm/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, PartialEq)] [INFO] [stderr] 58 | | pub enum PSSMError { [INFO] [stderr] 59 | | QueryTooShort(motif_len: usize, query_len: usize) { [INFO] [stderr] ... | [INFO] [stderr] 83 | | } [INFO] [stderr] 84 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_doc_comments)] on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/stats/hmm.rs:88:1 [INFO] [stderr] | [INFO] [stderr] 88 | /// Errors [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] 89 | / quick_error! { [INFO] [stderr] 90 | | #[derive(Debug, PartialEq)] [INFO] [stderr] 91 | | pub enum HMMError { [INFO] [stderr] 92 | | InvalidDimension(an0: usize, an1: usize, bn: usize, bm: usize, pin: usize) { [INFO] [stderr] ... | [INFO] [stderr] 98 | | } [INFO] [stderr] 99 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/pattern_matching/pssm/mod.rs:55:1 [INFO] [stderr] | [INFO] [stderr] 55 | /// Errors [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] 56 | / quick_error! { [INFO] [stderr] 57 | | #[derive(Debug, PartialEq)] [INFO] [stderr] 58 | | pub enum PSSMError { [INFO] [stderr] 59 | | QueryTooShort(motif_len: usize, query_len: usize) { [INFO] [stderr] ... | [INFO] [stderr] 83 | | } [INFO] [stderr] 84 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_doc_comments)] on by default [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused doc comment [INFO] [stderr] --> src/stats/hmm.rs:88:1 [INFO] [stderr] | [INFO] [stderr] 88 | /// Errors [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] 89 | / quick_error! { [INFO] [stderr] 90 | | #[derive(Debug, PartialEq)] [INFO] [stderr] 91 | | pub enum HMMError { [INFO] [stderr] 92 | | InvalidDimension(an0: usize, an1: usize, bn: usize, bm: usize, pin: usize) { [INFO] [stderr] ... | [INFO] [stderr] 98 | | } [INFO] [stderr] 99 | | } [INFO] [stderr] | |_- rustdoc does not generate documentation for macro expansions [INFO] [stderr] | [INFO] [stderr] = help: to document an item produced by a macro, the macro must produce the documentation as part of its expansion [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::ops::Deref` [INFO] [stderr] --> src/data_structures/bwt.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use std::ops::Deref; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::ops::Deref` [INFO] [stderr] --> src/data_structures/bwt.rs:15:5 [INFO] [stderr] | [INFO] [stderr] 15 | use std::ops::Deref; [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:102:14 [INFO] [stderr] | [INFO] [stderr] 102 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(deprecated)] on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:108:14 [INFO] [stderr] | [INFO] [stderr] 108 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:118:43 [INFO] [stderr] | [INFO] [stderr] 118 | record.seq.push_str(self.line.trim_right()); [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:65:18 [INFO] [stderr] | [INFO] [stderr] 65 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:71:18 [INFO] [stderr] | [INFO] [stderr] 71 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:169:18 [INFO] [stderr] | [INFO] [stderr] 169 | self.seq.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:174:19 [INFO] [stderr] | [INFO] [stderr] 174 | self.qual.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'ndarray::impl_methods::>::subview': renamed to `index_axis` [INFO] [stderr] --> src/stats/hmm.rs:266:22 [INFO] [stderr] | [INFO] [stderr] 266 | .subview(Axis(0), i - 1) [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:102:14 [INFO] [stderr] | [INFO] [stderr] 102 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(deprecated)] on by default [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:108:14 [INFO] [stderr] | [INFO] [stderr] 108 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fasta.rs:118:43 [INFO] [stderr] | [INFO] [stderr] 118 | record.seq.push_str(self.line.trim_right()); [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:65:18 [INFO] [stderr] | [INFO] [stderr] 65 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:71:18 [INFO] [stderr] | [INFO] [stderr] 71 | .trim_right() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:169:18 [INFO] [stderr] | [INFO] [stderr] 169 | self.seq.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` [INFO] [stderr] --> src/io/fastq.rs:174:19 [INFO] [stderr] | [INFO] [stderr] 174 | self.qual.trim_right().as_bytes() [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: use of deprecated item 'ndarray::impl_methods::>::subview': renamed to `index_axis` [INFO] [stderr] --> src/stats/hmm.rs:266:22 [INFO] [stderr] | [INFO] [stderr] 266 | .subview(Axis(0), i - 1) [INFO] [stderr] | ^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:232:13 [INFO] [stderr] | [INFO] [stderr] 232 | shiftand.find_all(TEXT.iter()).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_must_use)] on by default [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:242:13 [INFO] [stderr] | [INFO] [stderr] 242 | bndm.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:252:13 [INFO] [stderr] | [INFO] [stderr] 252 | bom.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:262:13 [INFO] [stderr] | [INFO] [stderr] 262 | horspool.find_all(TEXT).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used [INFO] [stderr] --> benches/pattern_matching.rs:272:13 [INFO] [stderr] | [INFO] [stderr] 272 | kmp.find_all(TEXT.iter()).collect::>(); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around function argument [INFO] [stderr] --> benches/interval_tree.rs:17:64 [INFO] [stderr] | [INFO] [stderr] 17 | b.iter(|| test_insert_query(10, &(100_000..200_000), 1000, (105_000..106_000))); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_parens)] on by default [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around function argument [INFO] [stderr] --> benches/interval_tree.rs:24:62 [INFO] [stderr] | [INFO] [stderr] 24 | b.iter(|| test_insert_query(10, &(100_000..200_000), 10, (99_995..199_995))); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around method argument [INFO] [stderr] --> benches/interval_tree.rs:36:21 [INFO] [stderr] | [INFO] [stderr] 36 | tree.insert((i..i + insert_size), (i..i + insert_size)); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around method argument [INFO] [stderr] --> benches/interval_tree.rs:36:43 [INFO] [stderr] | [INFO] [stderr] 36 | tree.insert((i..i + insert_size), (i..i + insert_size)); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] warning: unnecessary parentheses around function argument [INFO] [stderr] --> benches/interval_tree.rs:47:37 [INFO] [stderr] | [INFO] [stderr] 47 | assert_intersections(&tree, (lower_bound..upper_bound), &expected_intersections); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 21.74s [INFO] running `"docker" "inspect" "18a499efd89dab721d81af4cd78cde7df34405959a0efb0de65e0ce27667e921"` [INFO] running `"docker" "rm" "-f" "18a499efd89dab721d81af4cd78cde7df34405959a0efb0de65e0ce27667e921"` [INFO] [stdout] 18a499efd89dab721d81af4cd78cde7df34405959a0efb0de65e0ce27667e921