[INFO] fetching crate bio 0.24.0...
[INFO] extracting crate bio 0.24.0 into work/ex/pr-58899/sources/master#c0086b9e8972fef9fd4af24bae20d45021ed06c6/reg/bio/0.24.0
[INFO] extracting crate bio 0.24.0 into work/ex/pr-58899/sources/try#290ac7b29f41ff9fa5232f9a1116ea71a3501063/reg/bio/0.24.0
[INFO] validating manifest of bio-0.24.0 on toolchain master#c0086b9e8972fef9fd4af24bae20d45021ed06c6
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c0086b9e8972fef9fd4af24bae20d45021ed06c6-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of bio-0.24.0 on toolchain try#290ac7b29f41ff9fa5232f9a1116ea71a3501063
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+290ac7b29f41ff9fa5232f9a1116ea71a3501063-alt" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing bio-0.24.0
[INFO] finished frobbing bio-0.24.0
[INFO] frobbed toml for bio-0.24.0 written to work/ex/pr-58899/sources/master#c0086b9e8972fef9fd4af24bae20d45021ed06c6/reg/bio/0.24.0/Cargo.toml
[INFO] started frobbing bio-0.24.0
[INFO] finished frobbing bio-0.24.0
[INFO] frobbed toml for bio-0.24.0 written to work/ex/pr-58899/sources/try#290ac7b29f41ff9fa5232f9a1116ea71a3501063/reg/bio/0.24.0/Cargo.toml
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c0086b9e8972fef9fd4af24bae20d45021ed06c6-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+290ac7b29f41ff9fa5232f9a1116ea71a3501063-alt" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c0086b9e8972fef9fd4af24bae20d45021ed06c6-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+290ac7b29f41ff9fa5232f9a1116ea71a3501063-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] checking bio-0.24.0 against master#c0086b9e8972fef9fd4af24bae20d45021ed06c6 for pr-58899
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-58899/worker-0/master#c0086b9e8972fef9fd4af24bae20d45021ed06c6:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-58899/sources/master#c0086b9e8972fef9fd4af24bae20d45021ed06c6/reg/bio/0.24.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c0086b9e8972fef9fd4af24bae20d45021ed06c6-alt" "check" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] 4729783cc73905ab74cbc9b4540974fadf18e3f85d6501794270ec5c3b9ba811
[INFO] running `"docker" "start" "-a" "4729783cc73905ab74cbc9b4540974fadf18e3f85d6501794270ec5c3b9ba811"`
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bio v0.24.0 (/opt/crater/workdir)
[INFO] [stderr]     Checking statrs v0.9.0
[INFO] [stderr]     Checking csv v1.0.5
[INFO] [stderr]     Checking multimap v0.4.0
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking bio-types v0.4.0
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr] warning: unused import: `std::ops::Deref`
[INFO] [stderr]   --> src/data_structures/bwt.rs:15:5
[INFO] [stderr]    |
[INFO] [stderr] 15 | use std::ops::Deref;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::ops::Deref`
[INFO] [stderr]   --> src/data_structures/bwt.rs:15:5
[INFO] [stderr]    |
[INFO] [stderr] 15 | use std::ops::Deref;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_imports)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:102:14
[INFO] [stderr]     |
[INFO] [stderr] 102 |             .trim_right()
[INFO] [stderr]     |              ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(deprecated)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:108:14
[INFO] [stderr]     |
[INFO] [stderr] 108 |             .trim_right()
[INFO] [stderr]     |              ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:118:43
[INFO] [stderr]     |
[INFO] [stderr] 118 |             record.seq.push_str(self.line.trim_right());
[INFO] [stderr]     |                                           ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]   --> src/io/fastq.rs:65:18
[INFO] [stderr]    |
[INFO] [stderr] 65 |                 .trim_right()
[INFO] [stderr]    |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]   --> src/io/fastq.rs:71:18
[INFO] [stderr]    |
[INFO] [stderr] 71 |                 .trim_right()
[INFO] [stderr]    |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fastq.rs:169:18
[INFO] [stderr]     |
[INFO] [stderr] 169 |         self.seq.trim_right().as_bytes()
[INFO] [stderr]     |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fastq.rs:174:19
[INFO] [stderr]     |
[INFO] [stderr] 174 |         self.qual.trim_right().as_bytes()
[INFO] [stderr]     |                   ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::subview': renamed to `index_axis`
[INFO] [stderr]    --> src/stats/hmm.rs:266:22
[INFO] [stderr]     |
[INFO] [stderr] 266 |                     .subview(Axis(0), i - 1)
[INFO] [stderr]     |                      ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:102:14
[INFO] [stderr]     |
[INFO] [stderr] 102 |             .trim_right()
[INFO] [stderr]     |              ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(deprecated)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:108:14
[INFO] [stderr]     |
[INFO] [stderr] 108 |             .trim_right()
[INFO] [stderr]     |              ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fasta.rs:118:43
[INFO] [stderr]     |
[INFO] [stderr] 118 |             record.seq.push_str(self.line.trim_right());
[INFO] [stderr]     |                                           ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]   --> src/io/fastq.rs:65:18
[INFO] [stderr]    |
[INFO] [stderr] 65 |                 .trim_right()
[INFO] [stderr]    |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]   --> src/io/fastq.rs:71:18
[INFO] [stderr]    |
[INFO] [stderr] 71 |                 .trim_right()
[INFO] [stderr]    |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fastq.rs:169:18
[INFO] [stderr]     |
[INFO] [stderr] 169 |         self.seq.trim_right().as_bytes()
[INFO] [stderr]     |                  ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
[INFO] [stderr]    --> src/io/fastq.rs:174:19
[INFO] [stderr]     |
[INFO] [stderr] 174 |         self.qual.trim_right().as_bytes()
[INFO] [stderr]     |                   ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated item 'ndarray::impl_methods::<impl ndarray::ArrayBase<S, D>>::subview': renamed to `index_axis`
[INFO] [stderr]    --> src/stats/hmm.rs:266:22
[INFO] [stderr]     |
[INFO] [stderr] 266 |                     .subview(Axis(0), i - 1)
[INFO] [stderr]     |                      ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used
[INFO] [stderr]    --> benches/pattern_matching.rs:232:13
[INFO] [stderr]     |
[INFO] [stderr] 232 |             shiftand.find_all(TEXT.iter()).collect::<Vec<usize>>();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(unused_must_use)] on by default
[INFO] [stderr]     = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead
[INFO] [stderr] 
[INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used
[INFO] [stderr]    --> benches/pattern_matching.rs:242:13
[INFO] [stderr]     |
[INFO] [stderr] 242 |             bndm.find_all(TEXT).collect::<Vec<usize>>();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead
[INFO] [stderr] 
[INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used
[INFO] [stderr]    --> benches/pattern_matching.rs:252:13
[INFO] [stderr]     |
[INFO] [stderr] 252 |             bom.find_all(TEXT).collect::<Vec<usize>>();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead
[INFO] [stderr] 
[INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used
[INFO] [stderr]    --> benches/pattern_matching.rs:262:13
[INFO] [stderr]     |
[INFO] [stderr] 262 |             horspool.find_all(TEXT).collect::<Vec<usize>>();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead
[INFO] [stderr] 
[INFO] [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used
[INFO] [stderr]    --> benches/pattern_matching.rs:272:13
[INFO] [stderr]     |
[INFO] [stderr] 272 |             kmp.find_all(TEXT.iter()).collect::<Vec<usize>>();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around function argument
[INFO] [stderr]   --> benches/interval_tree.rs:17:64
[INFO] [stderr]    |
[INFO] [stderr] 17 |     b.iter(|| test_insert_query(10, &(100_000..200_000), 1000, (105_000..106_000)));
[INFO] [stderr]    |                                                                ^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(unused_parens)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around function argument
[INFO] [stderr]   --> benches/interval_tree.rs:24:62
[INFO] [stderr]    |
[INFO] [stderr] 24 |     b.iter(|| test_insert_query(10, &(100_000..200_000), 10, (99_995..199_995)));
[INFO] [stderr]    |                                                              ^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around method argument
[INFO] [stderr]   --> benches/interval_tree.rs:36:21
[INFO] [stderr]    |
[INFO] [stderr] 36 |         tree.insert((i..i + insert_size), (i..i + insert_size));
[INFO] [stderr]    |                     ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around method argument
[INFO] [stderr]   --> benches/interval_tree.rs:36:43
[INFO] [stderr]    |
[INFO] [stderr] 36 |         tree.insert((i..i + insert_size), (i..i + insert_size));
[INFO] [stderr]    |                                           ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around function argument
[INFO] [stderr]   --> benches/interval_tree.rs:47:37
[INFO] [stderr]    |
[INFO] [stderr] 47 |         assert_intersections(&tree, (lower_bound..upper_bound), &expected_intersections);
[INFO] [stderr]    |                                     ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stderr] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 26.04s
[INFO] running `"docker" "inspect" "4729783cc73905ab74cbc9b4540974fadf18e3f85d6501794270ec5c3b9ba811"`
[INFO] running `"docker" "rm" "-f" "4729783cc73905ab74cbc9b4540974fadf18e3f85d6501794270ec5c3b9ba811"`
[INFO] [stdout] 4729783cc73905ab74cbc9b4540974fadf18e3f85d6501794270ec5c3b9ba811