[INFO] updating cached repository StephanHeijl/global-supertrees [INFO] running `"git" "fetch" "--all"` [INFO] [stdout] Fetching origin [INFO] [stderr] From git://github.com/StephanHeijl/global-supertrees [INFO] [stderr] * branch HEAD -> FETCH_HEAD [INFO] running `"git" "clone" "work/cache/sources/gh/StephanHeijl/global-supertrees" "work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees"` [INFO] [stderr] Cloning into 'work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees'... [INFO] [stderr] done. [INFO] running `"git" "clone" "work/cache/sources/gh/StephanHeijl/global-supertrees" "work/ex/pr-57967/sources/try#7fea0229842e79db1159ea58ad9a653b288efee9/gh/StephanHeijl/global-supertrees"` [INFO] [stderr] Cloning into 'work/ex/pr-57967/sources/try#7fea0229842e79db1159ea58ad9a653b288efee9/gh/StephanHeijl/global-supertrees'... [INFO] [stderr] done. [INFO] running `"git" "rev-parse" "HEAD"` [INFO] [stdout] 6daceb7fd6152ba353f43af41e100f638990185a [INFO] sha for GitHub repo StephanHeijl/global-supertrees: 6daceb7fd6152ba353f43af41e100f638990185a [INFO] validating manifest of StephanHeijl/global-supertrees on toolchain master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] validating manifest of StephanHeijl/global-supertrees on toolchain try#7fea0229842e79db1159ea58ad9a653b288efee9 [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+7fea0229842e79db1159ea58ad9a653b288efee9-alt" "read-manifest" "--manifest-path" "Cargo.toml"` [INFO] started frobbing StephanHeijl/global-supertrees [INFO] finished frobbing StephanHeijl/global-supertrees [INFO] frobbed toml for StephanHeijl/global-supertrees written to work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees/Cargo.toml [INFO] started frobbing StephanHeijl/global-supertrees [INFO] finished frobbing StephanHeijl/global-supertrees [INFO] frobbed toml for StephanHeijl/global-supertrees written to work/ex/pr-57967/sources/try#7fea0229842e79db1159ea58ad9a653b288efee9/gh/StephanHeijl/global-supertrees/Cargo.toml [INFO] crate StephanHeijl/global-supertrees has a lockfile. skipping [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+7fea0229842e79db1159ea58ad9a653b288efee9-alt" "fetch" "--locked" "--manifest-path" "Cargo.toml"` [INFO] testing StephanHeijl/global-supertrees against master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54 for pr-57967 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-57967/worker-3/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54-alt" "build" "--frozen"` [INFO] [stdout] f0be75cd215e6383fedb90d8ebd0bc05d098b21479e1b185c79a6183187b18cf [INFO] running `"docker" "start" "-a" "f0be75cd215e6383fedb90d8ebd0bc05d098b21479e1b185c79a6183187b18cf"` [INFO] [stderr] Compiling ndarray v0.11.2 [INFO] [stderr] Compiling rayon v1.0.2 [INFO] [stderr] Compiling newick v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `ndarray::prelude::*` [INFO] [stderr] --> src/graph_tree.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use ndarray::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::collections::HashMap` [INFO] [stderr] --> src/graph_tree.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::collections::HashMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `tree_distance_matrix::*` [INFO] [stderr] --> src/graph_tree.rs:4:5 [INFO] [stderr] | [INFO] [stderr] 4 | use tree_distance_matrix::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Incoming` [INFO] [stderr] --> src/graph_tree.rs:7:23 [INFO] [stderr] | [INFO] [stderr] 7 | use petgraph::{Graph, Incoming}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::collections::HashMap` [INFO] [stderr] --> src/tree_merging.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use std::collections::HashMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `graph` [INFO] [stderr] --> src/graph_tree.rs:62:22 [INFO] [stderr] | [INFO] [stderr] 62 | let (graph, new_skip) = Tree::parse_tree_from_string( [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_graph` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/tree_merging.rs:21:9 [INFO] [stderr] | [INFO] [stderr] 21 | let mut new_trees: Vec = tree_leafs [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] warning: method is never used: `perform_operation_on_branch` [INFO] [stderr] --> src/tree.rs:106:5 [INFO] [stderr] | [INFO] [stderr] 106 | pub fn perform_operation_on_branch(&mut self, target_branch_idx : usize, mut current_branch_idx : usize, op : &mut F) -> Option { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(dead_code)] on by default [INFO] [stderr] [INFO] [stderr] warning: method is never used: `add_root_levels` [INFO] [stderr] --> src/tree.rs:250:5 [INFO] [stderr] | [INFO] [stderr] 250 | pub fn add_root_levels(&mut self, depth: usize) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `traverse_children` [INFO] [stderr] --> src/graph_tree.rs:17:5 [INFO] [stderr] | [INFO] [stderr] 17 | pub fn traverse_children(&self) -> Vec> { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `calculate_q_matrix` [INFO] [stderr] --> src/tree_distance_matrix.rs:18:5 [INFO] [stderr] | [INFO] [stderr] 18 | pub fn calculate_q_matrix(dm: &Array2) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `calculate_pair_distance_matrix` [INFO] [stderr] --> src/tree_distance_matrix.rs:32:5 [INFO] [stderr] | [INFO] [stderr] 32 | pub fn calculate_pair_distance_matrix(i: usize, j: usize, dm: &Array2) -> Array2 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `calculate_new_leaf_distances` [INFO] [stderr] --> src/tree_distance_matrix.rs:63:5 [INFO] [stderr] | [INFO] [stderr] 63 | pub fn calculate_new_leaf_distances(f: usize, g: usize, dm: &Array2) -> (f32, f32) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `find_min_matrix_ne` [INFO] [stderr] --> src/tree_distance_matrix.rs:79:5 [INFO] [stderr] | [INFO] [stderr] 79 | pub fn find_min_matrix_ne(matrix: Array2) -> [usize; 2] { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `neighbour_joining` [INFO] [stderr] --> src/tree_distance_matrix.rs:98:5 [INFO] [stderr] | [INFO] [stderr] 98 | pub fn neighbour_joining(&self) -> Tree { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `get_partial_distance_matrix` [INFO] [stderr] --> src/tree_distance_matrix.rs:450:5 [INFO] [stderr] | [INFO] [stderr] 450 | pub fn get_partial_distance_matrix(&self, leaves: &Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: method is never used: `new_from_matrix_and_leaves` [INFO] [stderr] --> src/tree_distance_matrix.rs:502:5 [INFO] [stderr] | [INFO] [stderr] 502 | / pub fn new_from_matrix_and_leaves( [INFO] [stderr] 503 | | distance_matrix: Array2, [INFO] [stderr] 504 | | leaves: Vec, [INFO] [stderr] 505 | | ) -> TreeDistanceMatrix { [INFO] [stderr] ... | [INFO] [stderr] 518 | | }; [INFO] [stderr] 519 | | } [INFO] [stderr] | |_____^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_trees` [INFO] [stderr] --> src/tree_merging.rs:10:1 [INFO] [stderr] | [INFO] [stderr] 10 | pub fn merge_trees(trees: Vec) { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `get_tree_size` [INFO] [stderr] --> src/tree_merging.rs:33:1 [INFO] [stderr] | [INFO] [stderr] 33 | fn get_tree_size(tree: &Tree) -> usize { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `sibling_merging` [INFO] [stderr] --> src/tree_merging.rs:37:1 [INFO] [stderr] | [INFO] [stderr] 37 | fn sibling_merging(mut trees: Vec) -> () { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `merge_distance_matrices` [INFO] [stderr] --> src/tree_merging.rs:96:1 [INFO] [stderr] | [INFO] [stderr] 96 | fn merge_distance_matrices(dms: Vec) -> TreeDistanceMatrix { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `keys_vec` [INFO] [stderr] --> src/utils.rs:17:1 [INFO] [stderr] | [INFO] [stderr] 17 | / pub fn keys_vec( [INFO] [stderr] 18 | | hm: &HashMap, [INFO] [stderr] 19 | | ) -> Vec { [INFO] [stderr] 20 | | return hm.keys().cloned().collect(); [INFO] [stderr] 21 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] warning: function is never used: `vec_to_set` [INFO] [stderr] --> src/utils.rs:23:1 [INFO] [stderr] | [INFO] [stderr] 23 | / pub fn vec_to_set( [INFO] [stderr] 24 | | vector: &Vec, [INFO] [stderr] 25 | | ) -> HashSet { [INFO] [stderr] 26 | | let mut set: HashSet = HashSet::new(); [INFO] [stderr] ... | [INFO] [stderr] 30 | | return set; [INFO] [stderr] 31 | | } [INFO] [stderr] | |_^ [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 10.09s [INFO] running `"docker" "inspect" "f0be75cd215e6383fedb90d8ebd0bc05d098b21479e1b185c79a6183187b18cf"` [INFO] running `"docker" "rm" "-f" "f0be75cd215e6383fedb90d8ebd0bc05d098b21479e1b185c79a6183187b18cf"` [INFO] [stdout] f0be75cd215e6383fedb90d8ebd0bc05d098b21479e1b185c79a6183187b18cf [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-57967/worker-3/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54-alt" "test" "--frozen" "--no-run"` [INFO] [stdout] 8b6b31b6fb2e93e35ceebeddee4a2e8df86e079b48d9dfe8edc9438f9723a953 [INFO] running `"docker" "start" "-a" "8b6b31b6fb2e93e35ceebeddee4a2e8df86e079b48d9dfe8edc9438f9723a953"` [INFO] [stderr] Compiling newick v0.1.0 (/opt/crater/workdir) [INFO] [stderr] warning: unused import: `ndarray::prelude::*` [INFO] [stderr] --> src/graph_tree.rs:1:5 [INFO] [stderr] | [INFO] [stderr] 1 | use ndarray::prelude::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_imports)] on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::collections::HashMap` [INFO] [stderr] --> src/graph_tree.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::collections::HashMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `tree_distance_matrix::*` [INFO] [stderr] --> src/graph_tree.rs:4:5 [INFO] [stderr] | [INFO] [stderr] 4 | use tree_distance_matrix::*; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `Incoming` [INFO] [stderr] --> src/graph_tree.rs:7:23 [INFO] [stderr] | [INFO] [stderr] 7 | use petgraph::{Graph, Incoming}; [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::collections::HashMap` [INFO] [stderr] --> src/tree_merging.rs:3:5 [INFO] [stderr] | [INFO] [stderr] 3 | use std::collections::HashMap; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused variable: `graph` [INFO] [stderr] --> src/graph_tree.rs:62:22 [INFO] [stderr] | [INFO] [stderr] 62 | let (graph, new_skip) = Tree::parse_tree_from_string( [INFO] [stderr] | ^^^^^ help: consider prefixing with an underscore: `_graph` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_variables)] on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/tree_merging.rs:21:9 [INFO] [stderr] | [INFO] [stderr] 21 | let mut new_trees: Vec = tree_leafs [INFO] [stderr] | ----^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: #[warn(unused_mut)] on by default [INFO] [stderr] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.61s [INFO] running `"docker" "inspect" "8b6b31b6fb2e93e35ceebeddee4a2e8df86e079b48d9dfe8edc9438f9723a953"` [INFO] running `"docker" "rm" "-f" "8b6b31b6fb2e93e35ceebeddee4a2e8df86e079b48d9dfe8edc9438f9723a953"` [INFO] [stdout] 8b6b31b6fb2e93e35ceebeddee4a2e8df86e079b48d9dfe8edc9438f9723a953 [INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-57967/worker-3/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-57967/sources/master#c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/gh/StephanHeijl/global-supertrees:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54-alt" "test" "--frozen"` [INFO] [stdout] de169f431d9737f4ebd798381ae5247a09320ee70f240706a5fcba177a8af632 [INFO] running `"docker" "start" "-a" "de169f431d9737f4ebd798381ae5247a09320ee70f240706a5fcba177a8af632"` [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running /opt/crater/target/debug/deps/newick-b68e7ddd4b86ca29 [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test tests::tests::test_find_first_zero ... ok [INFO] [stdout] test tests::tests::test_find_first_common_ancestor ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_3 ... ok [INFO] [stdout] test tests::tests::test_traversal ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_2 ... ok [INFO] [stdout] test test_tree_parsing::tests::test_construct_tree_from_file_1 ... ok [INFO] [stdout] test tests::tests::test_load_tree_file ... FAILED [INFO] [stdout] test tests::tests::test_to_distance_matrix_simple ... FAILED [INFO] [stdout] test tests::tests::test_to_distance_matrix_hard ... FAILED [INFO] [stdout] test tests::tests::test_get_partial_tree ... ok [INFO] [stdout] test tests::tests::test_neighbour_joining ... ok [INFO] [stdout] test tests::tests::test_tree_merging ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_load_tree_file stdout ---- [INFO] [stdout] thread 'tests::tests::test_load_tree_file' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/libcore/result.rs:997:5 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x560c7a3b0203 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hb587d2734f1dc7c5 [INFO] [stdout] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:39 [INFO] [stdout] 1: 0x560c7a3abe4b - std::sys_common::backtrace::_print::he39717f7cfbd122d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:70 [INFO] [stdout] 2: 0x560c7a3aedf6 - std::panicking::default_hook::{{closure}}::hb7f1ae5149814e5e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:58 [INFO] [stdout] at src/libstd/panicking.rs:200 [INFO] [stdout] 3: 0x560c7a3aeaf7 - std::panicking::default_hook::hc2b73d8ffc772b35 [INFO] [stdout] at src/libstd/panicking.rs:209 [INFO] [stdout] 4: 0x560c7a3af500 - std::panicking::rust_panic_with_hook::h625072734a147d22 [INFO] [stdout] at src/libstd/panicking.rs:478 [INFO] [stdout] 5: 0x560c7a3af081 - std::panicking::continue_panic_fmt::h3d3b66f689c3e04e [INFO] [stdout] at src/libstd/panicking.rs:385 [INFO] [stdout] 6: 0x560c7a3aef65 - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:312 [INFO] [stdout] 7: 0x560c7a3c5b6c - core::panicking::panic_fmt::h3dc182ff7fefc0c0 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 8: 0x560c7a2744b2 - core::result::unwrap_failed::hb18a22c6b18a97be [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/macros.rs:16 [INFO] [stdout] 9: 0x560c7a27207e - >::expect::h7c795149683b1586 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/result.rs:825 [INFO] [stdout] 10: 0x560c7a319f79 - newick::utils::load_tree_file::h77f0bf2308e7610f [INFO] [stdout] at src/utils.rs:7 [INFO] [stdout] 11: 0x560c7a2c0677 - newick::tests::tests::test_load_tree_file::hbf024215dec2b237 [INFO] [stdout] at src/tests.rs:38 [INFO] [stdout] 12: 0x560c7a2c0609 - newick::tests::tests::test_load_tree_file::{{closure}}::h273452399209c4ca [INFO] [stdout] at src/tests.rs:36 [INFO] [stdout] 13: 0x560c7a2a821d - core::ops::function::FnOnce::call_once::h9014f3d8c24406bd [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] 14: 0x560c7a323f6e - >::call_box::h6b39ff82621fe3f5 [INFO] [stdout] at src/libtest/lib.rs:1474 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 15: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 16: 0x560c7a3411f7 - test::run_test::run_test_inner::{{closure}}::h57942e399d1cc807 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at src/libtest/lib.rs:1429 [INFO] [stdout] 17: 0x560c7a31c9b4 - std::sys_common::backtrace::__rust_begin_short_backtrace::h85c77ad9ddf8fba3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/sys_common/backtrace.rs:135 [INFO] [stdout] 18: 0x560c7a31d084 - std::panicking::try::do_call::hf5b2072d080453d1 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:469 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:309 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:297 [INFO] [stdout] 19: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 20: 0x560c7a3241ec - >::call_box::hf0a5ea81172c4bf3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:468 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 21: 0x560c7a3b1edd - std::sys::unix::thread::Thread::new::thread_start::h60ff5f253b4125d5 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:744 [INFO] [stdout] at src/libstd/sys_common/thread.rs:14 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:81 [INFO] [stdout] 22: 0x7fea4be88493 - start_thread [INFO] [stdout] 23: 0x7fea4b9b3ace - __clone [INFO] [stdout] 24: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_to_distance_matrix_simple stdout ---- [INFO] [stdout] thread 'tests::tests::test_to_distance_matrix_simple' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/libcore/result.rs:997:5 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x560c7a3b0203 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hb587d2734f1dc7c5 [INFO] [stdout] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:39 [INFO] [stdout] 1: 0x560c7a3abe4b - std::sys_common::backtrace::_print::he39717f7cfbd122d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:70 [INFO] [stdout] 2: 0x560c7a3aedf6 - std::panicking::default_hook::{{closure}}::hb7f1ae5149814e5e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:58 [INFO] [stdout] at src/libstd/panicking.rs:200 [INFO] [stdout] 3: 0x560c7a3aeaf7 - std::panicking::default_hook::hc2b73d8ffc772b35 [INFO] [stdout] at src/libstd/panicking.rs:209 [INFO] [stdout] 4: 0x560c7a3af500 - std::panicking::rust_panic_with_hook::h625072734a147d22 [INFO] [stdout] at src/libstd/panicking.rs:478 [INFO] [stdout] 5: 0x560c7a3af081 - std::panicking::continue_panic_fmt::h3d3b66f689c3e04e [INFO] [stdout] at src/libstd/panicking.rs:385 [INFO] [stdout] 6: 0x560c7a3aef65 - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:312 [INFO] [stdout] 7: 0x560c7a3c5b6c - core::panicking::panic_fmt::h3dc182ff7fefc0c0 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 8: 0x560c7a2744b2 - core::result::unwrap_failed::hb18a22c6b18a97be [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/macros.rs:16 [INFO] [stdout] 9: 0x560c7a27207e - >::expect::h7c795149683b1586 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/result.rs:825 [INFO] [stdout] 10: 0x560c7a319f79 - newick::utils::load_tree_file::h77f0bf2308e7610f [INFO] [stdout] at src/utils.rs:7 [INFO] [stdout] 11: 0x560c7a2c215d - newick::tests::tests::test_to_distance_matrix_simple::hfbb6b4413a3ca58c [INFO] [stdout] at src/tests.rs:143 [INFO] [stdout] 12: 0x560c7a2c20e9 - newick::tests::tests::test_to_distance_matrix_simple::{{closure}}::ha0cff7cec21e1ca6 [INFO] [stdout] at src/tests.rs:141 [INFO] [stdout] 13: 0x560c7a2a80fd - core::ops::function::FnOnce::call_once::h1e3758a9ada87712 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] 14: 0x560c7a323f6e - >::call_box::h6b39ff82621fe3f5 [INFO] [stdout] at src/libtest/lib.rs:1474 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 15: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 16: 0x560c7a3411f7 - test::run_test::run_test_inner::{{closure}}::h57942e399d1cc807 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at src/libtest/lib.rs:1429 [INFO] [stdout] 17: 0x560c7a31c9b4 - std::sys_common::backtrace::__rust_begin_short_backtrace::h85c77ad9ddf8fba3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/sys_common/backtrace.rs:135 [INFO] [stdout] 18: 0x560c7a31d084 - std::panicking::try::do_call::hf5b2072d080453d1 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:469 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:309 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:297 [INFO] [stdout] 19: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 20: 0x560c7a3241ec - >::call_box::hf0a5ea81172c4bf3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:468 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 21: 0x560c7a3b1edd - std::sys::unix::thread::Thread::new::thread_start::h60ff5f253b4125d5 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:744 [INFO] [stdout] at src/libstd/sys_common/thread.rs:14 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:81 [INFO] [stdout] 22: 0x7fea4be88493 - start_thread [INFO] [stdout] 23: 0x7fea4b9b3ace - __clone [INFO] [stdout] 24: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- tests::tests::test_to_distance_matrix_hard stdout ---- [INFO] [stdout] thread 'tests::tests::test_to_distance_matrix_hard' panicked at 'file not found: Os { code: 2, kind: NotFound, message: "No such file or directory" }', src/libcore/result.rs:997:5 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x560c7a3b0203 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hb587d2734f1dc7c5 [INFO] [stdout] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:39 [INFO] [stdout] 1: 0x560c7a3abe4b - std::sys_common::backtrace::_print::he39717f7cfbd122d [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:70 [INFO] [stdout] 2: 0x560c7a3aedf6 - std::panicking::default_hook::{{closure}}::hb7f1ae5149814e5e [INFO] [stdout] at src/libstd/sys_common/backtrace.rs:58 [INFO] [stdout] at src/libstd/panicking.rs:200 [INFO] [stdout] 3: 0x560c7a3aeaf7 - std::panicking::default_hook::hc2b73d8ffc772b35 [INFO] [stdout] at src/libstd/panicking.rs:209 [INFO] [stdout] 4: 0x560c7a3af500 - std::panicking::rust_panic_with_hook::h625072734a147d22 [INFO] [stdout] at src/libstd/panicking.rs:478 [INFO] [stdout] 5: 0x560c7a3af081 - std::panicking::continue_panic_fmt::h3d3b66f689c3e04e [INFO] [stdout] at src/libstd/panicking.rs:385 [INFO] [stdout] 6: 0x560c7a3aef65 - rust_begin_unwind [INFO] [stdout] at src/libstd/panicking.rs:312 [INFO] [stdout] 7: 0x560c7a3c5b6c - core::panicking::panic_fmt::h3dc182ff7fefc0c0 [INFO] [stdout] at src/libcore/panicking.rs:85 [INFO] [stdout] 8: 0x560c7a2744b2 - core::result::unwrap_failed::hb18a22c6b18a97be [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/macros.rs:16 [INFO] [stdout] 9: 0x560c7a27207e - >::expect::h7c795149683b1586 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/result.rs:825 [INFO] [stdout] 10: 0x560c7a319f79 - newick::utils::load_tree_file::h77f0bf2308e7610f [INFO] [stdout] at src/utils.rs:7 [INFO] [stdout] 11: 0x560c7a2c226d - newick::tests::tests::test_to_distance_matrix_hard::h2421e4c22e18f631 [INFO] [stdout] at src/tests.rs:151 [INFO] [stdout] 12: 0x560c7a2c21f9 - newick::tests::tests::test_to_distance_matrix_hard::{{closure}}::hfa5d5a8c9a33d517 [INFO] [stdout] at src/tests.rs:149 [INFO] [stdout] 13: 0x560c7a2a813d - core::ops::function::FnOnce::call_once::h212d3bbc60933332 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] 14: 0x560c7a323f6e - >::call_box::h6b39ff82621fe3f5 [INFO] [stdout] at src/libtest/lib.rs:1474 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libcore/ops/function.rs:231 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 15: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 16: 0x560c7a3411f7 - test::run_test::run_test_inner::{{closure}}::h57942e399d1cc807 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at src/libtest/lib.rs:1429 [INFO] [stdout] 17: 0x560c7a31c9b4 - std::sys_common::backtrace::__rust_begin_short_backtrace::h85c77ad9ddf8fba3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/sys_common/backtrace.rs:135 [INFO] [stdout] 18: 0x560c7a31d084 - std::panicking::try::do_call::hf5b2072d080453d1 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:469 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:309 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:297 [INFO] [stdout] 19: 0x560c7a3b2729 - __rust_maybe_catch_panic [INFO] [stdout] at src/libpanic_unwind/lib.rs:92 [INFO] [stdout] 20: 0x560c7a3241ec - >::call_box::hf0a5ea81172c4bf3 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panicking.rs:276 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/panic.rs:388 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/libstd/thread/mod.rs:468 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:734 [INFO] [stdout] 21: 0x560c7a3b1edd - std::sys::unix::thread::Thread::new::thread_start::h60ff5f253b4125d5 [INFO] [stdout] at /rustc/c1c3c4e95b69dfeaca5c5db6c622d7f90ad30a54/src/liballoc/boxed.rs:744 [INFO] [stdout] at src/libstd/sys_common/thread.rs:14 [INFO] [stdout] at src/libstd/sys/unix/thread.rs:81 [INFO] [stdout] 22: 0x7fea4be88493 - start_thread [INFO] [stdout] 23: 0x7fea4b9b3ace - __clone [INFO] [stdout] 24: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::tests::test_load_tree_file [INFO] [stdout] tests::tests::test_to_distance_matrix_hard [INFO] [stdout] tests::tests::test_to_distance_matrix_simple [INFO] [stdout] [INFO] [stdout] test result: FAILED. 9 passed; 3 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin newick' [INFO] running `"docker" "inspect" "de169f431d9737f4ebd798381ae5247a09320ee70f240706a5fcba177a8af632"` [INFO] running `"docker" "rm" "-f" "de169f431d9737f4ebd798381ae5247a09320ee70f240706a5fcba177a8af632"` [INFO] [stdout] de169f431d9737f4ebd798381ae5247a09320ee70f240706a5fcba177a8af632