Dec 19 07:21:13.701 INFO checking tfursten/mtsv_tools against master#d99a320cba42f661aebfa1293b7b2ec3603dda75 for pr-56955
Dec 19 07:21:13.701 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56955/worker-0/master#d99a320cba42f661aebfa1293b7b2ec3603dda75:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-56955/sources/master#d99a320cba42f661aebfa1293b7b2ec3603dda75/gh/tfursten/mtsv_tools:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+d99a320cba42f661aebfa1293b7b2ec3603dda75-alt" "check" "--frozen" "--all" "--all-targets"`
Dec 19 07:21:14.138 INFO [stdout] a128005b6bf31aa2a4f31000cbde8403dc40ec7c54917a8ba9aae1d62ed4143a
Dec 19 07:21:14.144 INFO running `"docker" "start" "-a" "a128005b6bf31aa2a4f31000cbde8403dc40ec7c54917a8ba9aae1d62ed4143a"`
Dec 19 07:21:15.968 INFO [stderr]     Checking fixedbitset v0.1.8
Dec 19 07:21:15.976 INFO [stderr]     Checking itertools v0.4.19
Dec 19 07:21:15.984 INFO [stderr]     Checking memchr v0.1.11
Dec 19 07:21:15.984 INFO [stderr]     Checking xattr v0.1.11
Dec 19 07:21:16.004 INFO [stderr]     Checking num-complex v0.1.42
Dec 19 07:21:16.006 INFO [stderr]     Checking filetime v0.1.15
Dec 19 07:21:16.009 INFO [stderr]    Compiling miniz-sys v0.1.10
Dec 19 07:21:16.011 INFO [stderr]    Compiling ssw v0.1.0 (/opt/crater/workdir/ssw)
Dec 19 07:21:17.164 INFO [stderr]     Checking csv v0.14.7
Dec 19 07:21:17.164 INFO [stderr]     Checking bit-set v0.3.0
Dec 19 07:21:17.453 INFO [stderr]     Checking num-bigint v0.1.42
Dec 19 07:21:17.562 INFO [stderr]     Checking bincode v0.5.9
Dec 19 07:21:18.416 INFO [stderr]     Checking aho-corasick v0.5.3
Dec 19 07:21:18.809 INFO [stderr]     Checking tar v0.4.14
Dec 19 07:21:19.788 INFO [stderr]     Checking clap v2.29.4
Dec 19 07:21:21.420 INFO [stderr]     Checking uuid v0.1.18
Dec 19 07:21:21.633 INFO [stderr]     Checking petgraph v0.2.7 (/opt/crater/workdir/vendor/petgraph)
Dec 19 07:21:23.536 INFO [stderr]     Checking syncbox v0.2.4
Dec 19 07:21:24.040 INFO [stderr]     Checking thread-id v2.0.0
Dec 19 07:21:24.988 INFO [stderr]     Checking mktemp v0.2.1
Dec 19 07:21:25.028 INFO [stderr]     Checking thread_local v0.2.7
Dec 19 07:21:26.329 INFO [stderr]     Checking regex v0.1.80
Dec 19 07:21:26.881 INFO [stderr]     Checking cue v0.1.0
Dec 19 07:21:26.920 INFO [stderr]     Checking flate2 v0.2.20
Dec 19 07:21:27.416 INFO [stderr]     Checking daggy v0.4.0 (/opt/crater/workdir/vendor/daggy)
Dec 19 07:21:28.716 INFO [stderr]     Checking num-rational v0.1.41
Dec 19 07:21:30.684 INFO [stderr]     Checking num v0.1.41
Dec 19 07:21:31.186 INFO [stderr]     Checking nalgebra v0.4.0
Dec 19 07:21:31.188 INFO [stderr]     Checking chrono v0.2.25
Dec 19 07:21:31.189 INFO [stderr]     Checking stopwatch v0.0.6
Dec 19 07:21:33.092 INFO [stderr]     Checking env_logger v0.3.5
Dec 19 07:21:34.061 INFO [stderr]     Checking quickcheck v0.3.2
Dec 19 07:21:42.520 INFO [stderr]     Checking bio v0.5.0 (/opt/crater/workdir/vendor/rust-bio)
Dec 19 07:21:43.516 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.516 INFO [stderr]    --> vendor/rust-bio/src/io/fastq.rs:124:26
Dec 19 07:21:43.516 INFO [stderr]     |
Dec 19 07:21:43.516 INFO [stderr] 124 |         self.header[1..].trim_right().splitn(2, ' ').next()
Dec 19 07:21:43.516 INFO [stderr]     |                          ^^^^^^^^^^
Dec 19 07:21:43.516 INFO [stderr]     |
Dec 19 07:21:43.516 INFO [stderr]     = note: #[warn(deprecated)] on by default
Dec 19 07:21:43.516 INFO [stderr] 
Dec 19 07:21:43.516 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.517 INFO [stderr]    --> vendor/rust-bio/src/io/fastq.rs:129:26
Dec 19 07:21:43.517 INFO [stderr]     |
Dec 19 07:21:43.517 INFO [stderr] 129 |         self.header[1..].trim_right().splitn(2, ' ').skip(1).next()
Dec 19 07:21:43.517 INFO [stderr]     |                          ^^^^^^^^^^
Dec 19 07:21:43.517 INFO [stderr] 
Dec 19 07:21:43.517 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.517 INFO [stderr]    --> vendor/rust-bio/src/io/fastq.rs:134:18
Dec 19 07:21:43.517 INFO [stderr]     |
Dec 19 07:21:43.517 INFO [stderr] 134 |         self.seq.trim_right().as_bytes()
Dec 19 07:21:43.517 INFO [stderr]     |                  ^^^^^^^^^^
Dec 19 07:21:43.517 INFO [stderr] 
Dec 19 07:21:43.517 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.517 INFO [stderr]    --> vendor/rust-bio/src/io/fastq.rs:139:19
Dec 19 07:21:43.517 INFO [stderr]     |
Dec 19 07:21:43.517 INFO [stderr] 139 |         self.qual.trim_right().as_bytes()
Dec 19 07:21:43.517 INFO [stderr]     |                   ^^^^^^^^^^
Dec 19 07:21:43.517 INFO [stderr] 
Dec 19 07:21:43.526 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.526 INFO [stderr]   --> vendor/rust-bio/src/io/fasta.rs:73:44
Dec 19 07:21:43.526 INFO [stderr]    |
Dec 19 07:21:43.526 INFO [stderr] 73 |             record.seq.push_str(&self.line.trim_right());
Dec 19 07:21:43.526 INFO [stderr]    |                                            ^^^^^^^^^^
Dec 19 07:21:43.526 INFO [stderr] 
Dec 19 07:21:43.553 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.553 INFO [stderr]    --> vendor/rust-bio/src/io/fasta.rs:333:21
Dec 19 07:21:43.553 INFO [stderr]     |
Dec 19 07:21:43.553 INFO [stderr] 333 |         self.header.trim_right().splitn(2, ' ').next()
Dec 19 07:21:43.553 INFO [stderr]     |                     ^^^^^^^^^^
Dec 19 07:21:43.553 INFO [stderr] 
Dec 19 07:21:43.554 INFO [stderr] warning: use of deprecated item 'core::str::<impl str>::trim_right': superseded by `trim_end`
Dec 19 07:21:43.554 INFO [stderr]    --> vendor/rust-bio/src/io/fasta.rs:338:21
Dec 19 07:21:43.554 INFO [stderr]     |
Dec 19 07:21:43.554 INFO [stderr] 338 |         self.header.trim_right().splitn(2, ' ').skip(1).next()
Dec 19 07:21:43.554 INFO [stderr]     |                     ^^^^^^^^^^
Dec 19 07:21:43.554 INFO [stderr] 
Dec 19 07:21:44.042 INFO [stderr]     Checking mtsv v0.4.0 (/opt/crater/workdir)
Dec 19 07:21:52.165 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 36.42s
Dec 19 07:21:53.188 INFO running `"docker" "inspect" "a128005b6bf31aa2a4f31000cbde8403dc40ec7c54917a8ba9aae1d62ed4143a"`
Dec 19 07:21:53.416 INFO running `"docker" "rm" "-f" "a128005b6bf31aa2a4f31000cbde8403dc40ec7c54917a8ba9aae1d62ed4143a"`
Dec 19 07:21:53.724 INFO [stdout] a128005b6bf31aa2a4f31000cbde8403dc40ec7c54917a8ba9aae1d62ed4143a