Dec 15 08:58:11.798 INFO testing heme-0.3.1 against try#aa49d8ef14939ddec0e34b346b60174a5673d48f for pr-56550
Dec 15 08:58:11.798 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-7/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-7/pr-56550/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +aa49d8ef14939ddec0e34b346b60174a5673d48f-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:11.989 INFO [stdout] 57128e035d22a686232c07c856ea3bc7dce2c52bf5c8702ec32ea2fe123c3c32
Dec 15 08:58:11.991 INFO running `"docker" "start" "-a" "57128e035d22a686232c07c856ea3bc7dce2c52bf5c8702ec32ea2fe123c3c32"`
Dec 15 08:58:12.446 INFO [stderr] usermod: no changes
Dec 15 08:58:12.473 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 15 08:58:12.979 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 15 08:58:12.979 INFO [stderr]  --> src/sampling.rs:1:5
Dec 15 08:58:12.979 INFO [stderr]   |
Dec 15 08:58:12.979 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 15 08:58:12.979 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:12.979 INFO [stderr]   |
Dec 15 08:58:12.979 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 15 08:58:12.979 INFO [stderr] 
Dec 15 08:58:13.029 INFO [stderr] warning: unused variable: `protocol_name`
Dec 15 08:58:13.029 INFO [stderr]   --> src/sampling.rs:20:21
Dec 15 08:58:13.029 INFO [stderr]    |
Dec 15 08:58:13.030 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 15 08:58:13.030 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 15 08:58:13.030 INFO [stderr]    |
Dec 15 08:58:13.030 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 15 08:58:13.031 INFO [stderr] 
Dec 15 08:58:13.031 INFO [stderr] warning: unused variable: `a1`
Dec 15 08:58:13.031 INFO [stderr]   --> src/scoring.rs:24:39
Dec 15 08:58:13.031 INFO [stderr]    |
Dec 15 08:58:13.032 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:13.032 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 15 08:58:13.032 INFO [stderr] 
Dec 15 08:58:13.032 INFO [stderr] warning: unused variable: `a2`
Dec 15 08:58:13.033 INFO [stderr]   --> src/scoring.rs:24:50
Dec 15 08:58:13.033 INFO [stderr]    |
Dec 15 08:58:13.033 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:13.033 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 15 08:58:13.034 INFO [stderr] 
Dec 15 08:58:13.051 INFO [stderr] warning: field is never used: `atoms`
Dec 15 08:58:13.051 INFO [stderr]   --> src/conformation.rs:52:5
Dec 15 08:58:13.051 INFO [stderr]    |
Dec 15 08:58:13.052 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 15 08:58:13.052 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 15 08:58:13.052 INFO [stderr]    |
Dec 15 08:58:13.052 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 15 08:58:13.052 INFO [stderr] 
Dec 15 08:58:13.053 INFO [stderr] warning: field is never used: `residue_name`
Dec 15 08:58:13.053 INFO [stderr]   --> src/conformation.rs:53:5
Dec 15 08:58:13.053 INFO [stderr]    |
Dec 15 08:58:13.054 INFO [stderr] 53 |     residue_name: String,
Dec 15 08:58:13.054 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:13.054 INFO [stderr] 
Dec 15 08:58:13.054 INFO [stderr] warning: field is never used: `residue_index`
Dec 15 08:58:13.055 INFO [stderr]   --> src/conformation.rs:54:5
Dec 15 08:58:13.055 INFO [stderr]    |
Dec 15 08:58:13.055 INFO [stderr] 54 |     residue_index: i32,
Dec 15 08:58:13.055 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 15 08:58:13.055 INFO [stderr] 
Dec 15 08:58:14.628 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.16s
Dec 15 08:58:14.630 INFO [stderr] su: No module specific data is present
Dec 15 08:58:14.993 INFO running `"docker" "inspect" "57128e035d22a686232c07c856ea3bc7dce2c52bf5c8702ec32ea2fe123c3c32"`
Dec 15 08:58:15.100 INFO running `"docker" "rm" "-f" "57128e035d22a686232c07c856ea3bc7dce2c52bf5c8702ec32ea2fe123c3c32"`
Dec 15 08:58:15.194 INFO [stdout] 57128e035d22a686232c07c856ea3bc7dce2c52bf5c8702ec32ea2fe123c3c32
Dec 15 08:58:15.199 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-7/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-7/pr-56550/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +aa49d8ef14939ddec0e34b346b60174a5673d48f-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:15.535 INFO [stdout] 54905d70b2b7eacaf8c62015980c3f3e917bb3803bb9c4a47cc9ae52a432f33b
Dec 15 08:58:15.537 INFO running `"docker" "start" "-a" "54905d70b2b7eacaf8c62015980c3f3e917bb3803bb9c4a47cc9ae52a432f33b"`
Dec 15 08:58:16.012 INFO [stderr] usermod: no changes
Dec 15 08:58:16.040 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 15 08:58:16.723 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 15 08:58:16.723 INFO [stderr]  --> src/sampling.rs:1:5
Dec 15 08:58:16.723 INFO [stderr]   |
Dec 15 08:58:16.723 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 15 08:58:16.723 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.723 INFO [stderr]   |
Dec 15 08:58:16.723 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 15 08:58:16.723 INFO [stderr] 
Dec 15 08:58:16.783 INFO [stderr] warning: unused variable: `protocol_name`
Dec 15 08:58:16.783 INFO [stderr]   --> src/sampling.rs:20:21
Dec 15 08:58:16.783 INFO [stderr]    |
Dec 15 08:58:16.783 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 15 08:58:16.783 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 15 08:58:16.783 INFO [stderr]    |
Dec 15 08:58:16.783 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 15 08:58:16.783 INFO [stderr] 
Dec 15 08:58:16.783 INFO [stderr] warning: unused variable: `a1`
Dec 15 08:58:16.783 INFO [stderr]   --> src/scoring.rs:24:39
Dec 15 08:58:16.783 INFO [stderr]    |
Dec 15 08:58:16.783 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:16.783 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 15 08:58:16.783 INFO [stderr] 
Dec 15 08:58:16.783 INFO [stderr] warning: unused variable: `a2`
Dec 15 08:58:16.783 INFO [stderr]   --> src/scoring.rs:24:50
Dec 15 08:58:16.783 INFO [stderr]    |
Dec 15 08:58:16.783 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:16.783 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 15 08:58:16.783 INFO [stderr] 
Dec 15 08:58:16.806 INFO [stderr] warning: field is never used: `atoms`
Dec 15 08:58:16.807 INFO [stderr]   --> src/conformation.rs:52:5
Dec 15 08:58:16.807 INFO [stderr]    |
Dec 15 08:58:16.807 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 15 08:58:16.807 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 15 08:58:16.807 INFO [stderr]    |
Dec 15 08:58:16.807 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 15 08:58:16.807 INFO [stderr] 
Dec 15 08:58:16.807 INFO [stderr] warning: field is never used: `residue_name`
Dec 15 08:58:16.807 INFO [stderr]   --> src/conformation.rs:53:5
Dec 15 08:58:16.807 INFO [stderr]    |
Dec 15 08:58:16.807 INFO [stderr] 53 |     residue_name: String,
Dec 15 08:58:16.807 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.807 INFO [stderr] 
Dec 15 08:58:16.807 INFO [stderr] warning: field is never used: `residue_index`
Dec 15 08:58:16.807 INFO [stderr]   --> src/conformation.rs:54:5
Dec 15 08:58:16.807 INFO [stderr]    |
Dec 15 08:58:16.807 INFO [stderr] 54 |     residue_index: i32,
Dec 15 08:58:16.807 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.807 INFO [stderr] 
Dec 15 08:58:16.811 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Dec 15 08:58:16.811 INFO [stderr]    --> src/io.rs:152:9
Dec 15 08:58:16.811 INFO [stderr]     |
Dec 15 08:58:16.811 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Dec 15 08:58:16.811 INFO [stderr] 153 | |
Dec 15 08:58:16.811 INFO [stderr] 154 | |             // bounds of N choose lN
Dec 15 08:58:16.811 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Dec 15 08:58:16.811 INFO [stderr] ...   |
Dec 15 08:58:16.811 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Dec 15 08:58:16.811 INFO [stderr] 162 | |         }
Dec 15 08:58:16.811 INFO [stderr]     | |_________^
Dec 15 08:58:16.811 INFO [stderr]     |
Dec 15 08:58:16.811 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Dec 15 08:58:16.811 INFO [stderr] 
Dec 15 08:58:17.303 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.27s
Dec 15 08:58:17.303 INFO [stderr] su: No module specific data is present
Dec 15 08:58:17.621 INFO running `"docker" "inspect" "54905d70b2b7eacaf8c62015980c3f3e917bb3803bb9c4a47cc9ae52a432f33b"`
Dec 15 08:58:17.700 INFO running `"docker" "rm" "-f" "54905d70b2b7eacaf8c62015980c3f3e917bb3803bb9c4a47cc9ae52a432f33b"`
Dec 15 08:58:17.809 INFO [stdout] 54905d70b2b7eacaf8c62015980c3f3e917bb3803bb9c4a47cc9ae52a432f33b
Dec 15 08:58:17.811 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-7/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-7/pr-56550/try#aa49d8ef14939ddec0e34b346b60174a5673d48f:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +aa49d8ef14939ddec0e34b346b60174a5673d48f-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:18.027 INFO [stdout] 7a8852c92431cc42efefc3110944b37dc6a1261ff8e09988cc4c6af11c85fedc
Dec 15 08:58:18.027 INFO running `"docker" "start" "-a" "7a8852c92431cc42efefc3110944b37dc6a1261ff8e09988cc4c6af11c85fedc"`
Dec 15 08:58:18.553 INFO [stderr] usermod: no changes
Dec 15 08:58:18.572 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.00s
Dec 15 08:58:18.572 INFO [stderr]      Running /target/debug/deps/heme-cc7ff7b350d426e9
Dec 15 08:58:18.574 INFO [stdout] 
Dec 15 08:58:18.574 INFO [stdout] running 4 tests
Dec 15 08:58:18.574 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Dec 15 08:58:18.574 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Dec 15 08:58:18.575 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Dec 15 08:58:18.575 INFO [stdout] test io::tests::test_entropy_function ... ok
Dec 15 08:58:18.575 INFO [stdout] 
Dec 15 08:58:18.575 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:18.576 INFO [stdout] 
Dec 15 08:58:18.576 INFO [stderr]      Running /target/debug/deps/heme-79ab9443e52aa41e
Dec 15 08:58:18.577 INFO [stdout] 
Dec 15 08:58:18.577 INFO [stdout] running 0 tests
Dec 15 08:58:18.577 INFO [stdout] 
Dec 15 08:58:18.577 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:18.577 INFO [stdout] 
Dec 15 08:58:18.578 INFO [stderr]    Doc-tests heme
Dec 15 08:58:19.527 INFO [stdout] 
Dec 15 08:58:19.527 INFO [stdout] running 1 test
Dec 15 08:58:20.583 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Dec 15 08:58:20.583 INFO [stdout] 
Dec 15 08:58:20.583 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:20.583 INFO [stdout] 
Dec 15 08:58:20.596 INFO [stderr] su: No module specific data is present
Dec 15 08:58:21.151 INFO running `"docker" "inspect" "7a8852c92431cc42efefc3110944b37dc6a1261ff8e09988cc4c6af11c85fedc"`
Dec 15 08:58:21.401 INFO running `"docker" "rm" "-f" "7a8852c92431cc42efefc3110944b37dc6a1261ff8e09988cc4c6af11c85fedc"`
Dec 15 08:58:21.643 INFO [stdout] 7a8852c92431cc42efefc3110944b37dc6a1261ff8e09988cc4c6af11c85fedc