Dec 15 08:58:11.864 INFO testing heme-0.3.1 against master#bd47d6825bf4090517549d33cfef10d3300b4a75 for pr-56550
Dec 15 08:58:11.864 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-2/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56550/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +bd47d6825bf4090517549d33cfef10d3300b4a75-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:12.092 INFO [stdout] 6e0ce2acb300eb4760052ed890a9e62aa9c1ee4f79d50649a4278ea7d1e485ea
Dec 15 08:58:12.093 INFO running `"docker" "start" "-a" "6e0ce2acb300eb4760052ed890a9e62aa9c1ee4f79d50649a4278ea7d1e485ea"`
Dec 15 08:58:12.602 INFO [stderr] usermod: no changes
Dec 15 08:58:12.639 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 15 08:58:13.133 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 15 08:58:13.133 INFO [stderr]  --> src/sampling.rs:1:5
Dec 15 08:58:13.133 INFO [stderr]   |
Dec 15 08:58:13.133 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 15 08:58:13.133 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:13.133 INFO [stderr]   |
Dec 15 08:58:13.133 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 15 08:58:13.133 INFO [stderr] 
Dec 15 08:58:13.187 INFO [stderr] warning: unused variable: `protocol_name`
Dec 15 08:58:13.187 INFO [stderr]   --> src/sampling.rs:20:21
Dec 15 08:58:13.187 INFO [stderr]    |
Dec 15 08:58:13.187 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 15 08:58:13.187 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 15 08:58:13.187 INFO [stderr]    |
Dec 15 08:58:13.187 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 15 08:58:13.187 INFO [stderr] 
Dec 15 08:58:13.187 INFO [stderr] warning: unused variable: `a1`
Dec 15 08:58:13.187 INFO [stderr]   --> src/scoring.rs:24:39
Dec 15 08:58:13.187 INFO [stderr]    |
Dec 15 08:58:13.187 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:13.187 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 15 08:58:13.187 INFO [stderr] 
Dec 15 08:58:13.187 INFO [stderr] warning: unused variable: `a2`
Dec 15 08:58:13.187 INFO [stderr]   --> src/scoring.rs:24:50
Dec 15 08:58:13.187 INFO [stderr]    |
Dec 15 08:58:13.187 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:13.187 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 15 08:58:13.187 INFO [stderr] 
Dec 15 08:58:13.204 INFO [stderr] warning: field is never used: `atoms`
Dec 15 08:58:13.204 INFO [stderr]   --> src/conformation.rs:52:5
Dec 15 08:58:13.204 INFO [stderr]    |
Dec 15 08:58:13.204 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 15 08:58:13.204 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 15 08:58:13.204 INFO [stderr]    |
Dec 15 08:58:13.204 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 15 08:58:13.204 INFO [stderr] 
Dec 15 08:58:13.204 INFO [stderr] warning: field is never used: `residue_name`
Dec 15 08:58:13.204 INFO [stderr]   --> src/conformation.rs:53:5
Dec 15 08:58:13.204 INFO [stderr]    |
Dec 15 08:58:13.204 INFO [stderr] 53 |     residue_name: String,
Dec 15 08:58:13.204 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:13.204 INFO [stderr] 
Dec 15 08:58:13.204 INFO [stderr] warning: field is never used: `residue_index`
Dec 15 08:58:13.204 INFO [stderr]   --> src/conformation.rs:54:5
Dec 15 08:58:13.204 INFO [stderr]    |
Dec 15 08:58:13.204 INFO [stderr] 54 |     residue_index: i32,
Dec 15 08:58:13.204 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 15 08:58:13.204 INFO [stderr] 
Dec 15 08:58:14.687 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2.06s
Dec 15 08:58:14.689 INFO [stderr] su: No module specific data is present
Dec 15 08:58:15.049 INFO running `"docker" "inspect" "6e0ce2acb300eb4760052ed890a9e62aa9c1ee4f79d50649a4278ea7d1e485ea"`
Dec 15 08:58:15.153 INFO running `"docker" "rm" "-f" "6e0ce2acb300eb4760052ed890a9e62aa9c1ee4f79d50649a4278ea7d1e485ea"`
Dec 15 08:58:15.315 INFO [stdout] 6e0ce2acb300eb4760052ed890a9e62aa9c1ee4f79d50649a4278ea7d1e485ea
Dec 15 08:58:15.317 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-2/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56550/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +bd47d6825bf4090517549d33cfef10d3300b4a75-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:15.641 INFO [stdout] 8749b5254aecb1efd368d7afb136f80e9bdfd610c1c6e321f243d312083c2045
Dec 15 08:58:15.646 INFO running `"docker" "start" "-a" "8749b5254aecb1efd368d7afb136f80e9bdfd610c1c6e321f243d312083c2045"`
Dec 15 08:58:16.226 INFO [stderr] usermod: no changes
Dec 15 08:58:16.256 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 15 08:58:16.878 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 15 08:58:16.878 INFO [stderr]  --> src/sampling.rs:1:5
Dec 15 08:58:16.878 INFO [stderr]   |
Dec 15 08:58:16.878 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 15 08:58:16.878 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.878 INFO [stderr]   |
Dec 15 08:58:16.878 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 15 08:58:16.878 INFO [stderr] 
Dec 15 08:58:16.926 INFO [stderr] warning: unused variable: `protocol_name`
Dec 15 08:58:16.926 INFO [stderr]   --> src/sampling.rs:20:21
Dec 15 08:58:16.926 INFO [stderr]    |
Dec 15 08:58:16.926 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 15 08:58:16.926 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 15 08:58:16.926 INFO [stderr]    |
Dec 15 08:58:16.926 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 15 08:58:16.926 INFO [stderr] 
Dec 15 08:58:16.926 INFO [stderr] warning: unused variable: `a1`
Dec 15 08:58:16.926 INFO [stderr]   --> src/scoring.rs:24:39
Dec 15 08:58:16.926 INFO [stderr]    |
Dec 15 08:58:16.926 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:16.926 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 15 08:58:16.926 INFO [stderr] 
Dec 15 08:58:16.926 INFO [stderr] warning: unused variable: `a2`
Dec 15 08:58:16.926 INFO [stderr]   --> src/scoring.rs:24:50
Dec 15 08:58:16.926 INFO [stderr]    |
Dec 15 08:58:16.926 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 15 08:58:16.926 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 15 08:58:16.926 INFO [stderr] 
Dec 15 08:58:16.954 INFO [stderr] warning: field is never used: `atoms`
Dec 15 08:58:16.954 INFO [stderr]   --> src/conformation.rs:52:5
Dec 15 08:58:16.954 INFO [stderr]    |
Dec 15 08:58:16.954 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 15 08:58:16.954 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 15 08:58:16.954 INFO [stderr]    |
Dec 15 08:58:16.954 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 15 08:58:16.954 INFO [stderr] 
Dec 15 08:58:16.954 INFO [stderr] warning: field is never used: `residue_name`
Dec 15 08:58:16.954 INFO [stderr]   --> src/conformation.rs:53:5
Dec 15 08:58:16.954 INFO [stderr]    |
Dec 15 08:58:16.954 INFO [stderr] 53 |     residue_name: String,
Dec 15 08:58:16.954 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.954 INFO [stderr] 
Dec 15 08:58:16.954 INFO [stderr] warning: field is never used: `residue_index`
Dec 15 08:58:16.954 INFO [stderr]   --> src/conformation.rs:54:5
Dec 15 08:58:16.954 INFO [stderr]    |
Dec 15 08:58:16.954 INFO [stderr] 54 |     residue_index: i32,
Dec 15 08:58:16.954 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 15 08:58:16.954 INFO [stderr] 
Dec 15 08:58:16.963 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Dec 15 08:58:16.963 INFO [stderr]    --> src/io.rs:152:9
Dec 15 08:58:16.963 INFO [stderr]     |
Dec 15 08:58:16.963 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Dec 15 08:58:16.963 INFO [stderr] 153 | |
Dec 15 08:58:16.963 INFO [stderr] 154 | |             // bounds of N choose lN
Dec 15 08:58:16.963 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Dec 15 08:58:16.963 INFO [stderr] ...   |
Dec 15 08:58:16.963 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Dec 15 08:58:16.963 INFO [stderr] 162 | |         }
Dec 15 08:58:16.963 INFO [stderr]     | |_________^
Dec 15 08:58:16.963 INFO [stderr]     |
Dec 15 08:58:16.963 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Dec 15 08:58:16.963 INFO [stderr] 
Dec 15 08:58:17.459 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.21s
Dec 15 08:58:17.461 INFO [stderr] su: No module specific data is present
Dec 15 08:58:17.729 INFO running `"docker" "inspect" "8749b5254aecb1efd368d7afb136f80e9bdfd610c1c6e321f243d312083c2045"`
Dec 15 08:58:17.832 INFO running `"docker" "rm" "-f" "8749b5254aecb1efd368d7afb136f80e9bdfd610c1c6e321f243d312083c2045"`
Dec 15 08:58:17.955 INFO [stdout] 8749b5254aecb1efd368d7afb136f80e9bdfd610c1c6e321f243d312083c2045
Dec 15 08:58:17.957 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56550/worker-2/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56550/master#bd47d6825bf4090517549d33cfef10d3300b4a75:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +bd47d6825bf4090517549d33cfef10d3300b4a75-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 15 08:58:18.161 INFO [stdout] bd91dd49c72478676b790377025709033041e90fa501f7c92b8c676305e2db8a
Dec 15 08:58:18.165 INFO running `"docker" "start" "-a" "bd91dd49c72478676b790377025709033041e90fa501f7c92b8c676305e2db8a"`
Dec 15 08:58:18.677 INFO [stderr] usermod: no changes
Dec 15 08:58:18.717 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Dec 15 08:58:18.717 INFO [stdout] 
Dec 15 08:58:18.717 INFO [stderr]      Running /target/debug/deps/heme-9608594824daab5d
Dec 15 08:58:18.717 INFO [stdout] running 4 tests
Dec 15 08:58:18.719 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Dec 15 08:58:18.719 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Dec 15 08:58:18.719 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Dec 15 08:58:18.719 INFO [stdout] test io::tests::test_entropy_function ... ok
Dec 15 08:58:18.719 INFO [stdout] 
Dec 15 08:58:18.719 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:18.719 INFO [stdout] 
Dec 15 08:58:18.720 INFO [stderr]      Running /target/debug/deps/heme-de7afa74d3fa8f77
Dec 15 08:58:18.722 INFO [stderr]    Doc-tests heme
Dec 15 08:58:18.722 INFO [stdout] 
Dec 15 08:58:18.722 INFO [stdout] running 0 tests
Dec 15 08:58:18.722 INFO [stdout] 
Dec 15 08:58:18.722 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:18.722 INFO [stdout] 
Dec 15 08:58:19.530 INFO [stdout] 
Dec 15 08:58:19.530 INFO [stdout] running 1 test
Dec 15 08:58:20.535 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Dec 15 08:58:20.535 INFO [stdout] 
Dec 15 08:58:20.535 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 15 08:58:20.535 INFO [stdout] 
Dec 15 08:58:20.545 INFO [stderr] su: No module specific data is present
Dec 15 08:58:21.062 INFO running `"docker" "inspect" "bd91dd49c72478676b790377025709033041e90fa501f7c92b8c676305e2db8a"`
Dec 15 08:58:21.421 INFO running `"docker" "rm" "-f" "bd91dd49c72478676b790377025709033041e90fa501f7c92b8c676305e2db8a"`
Dec 15 08:58:21.671 INFO [stdout] bd91dd49c72478676b790377025709033041e90fa501f7c92b8c676305e2db8a