Dec 06 16:43:19.407 INFO testing yacrd-0.4.1 against try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468 for pr-56514
Dec 06 16:43:19.407 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-5/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-5/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 06 16:43:19.958 INFO [stdout] 6f799c6f3591dd3d8438858df9d40323f3b9bfe785cf11f68e25ffa6e9f536b9
Dec 06 16:43:19.966 INFO running `"docker" "start" "-a" "6f799c6f3591dd3d8438858df9d40323f3b9bfe785cf11f68e25ffa6e9f536b9"`
Dec 06 16:43:20.840 INFO [stderr] usermod: no changes
Dec 06 16:43:21.140 INFO [stderr]    Compiling bv v0.7.4
Dec 06 16:43:21.155 INFO [stderr]    Compiling lzma-sys v0.1.11
Dec 06 16:43:21.155 INFO [stderr]    Compiling ndarray v0.9.1
Dec 06 16:43:21.155 INFO [stderr]    Compiling flate2 v1.0.6
Dec 06 16:43:21.155 INFO [stderr]    Compiling serde v1.0.80
Dec 06 16:43:22.079 INFO [stderr]    Compiling xz2 v0.1.6
Dec 06 16:43:33.672 INFO [stderr]    Compiling vec_map v0.8.1
Dec 06 16:43:33.672 INFO [stderr]    Compiling multimap v0.4.0
Dec 06 16:43:33.672 INFO [stderr]    Compiling csv v1.0.2
Dec 06 16:43:33.672 INFO [stderr]    Compiling serde_json v1.0.33
Dec 06 16:43:37.656 INFO [stderr]    Compiling clap v2.32.0
Dec 06 16:43:40.075 INFO [stderr]    Compiling bio v0.21.0
Dec 06 16:43:54.556 INFO [stderr]    Compiling yacrd v0.4.1 (/source)
Dec 06 16:44:02.838 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 41.97s
Dec 06 16:44:02.847 INFO [stderr] su: No module specific data is present
Dec 06 16:44:03.246 INFO running `"docker" "inspect" "6f799c6f3591dd3d8438858df9d40323f3b9bfe785cf11f68e25ffa6e9f536b9"`
Dec 06 16:44:03.362 INFO running `"docker" "rm" "-f" "6f799c6f3591dd3d8438858df9d40323f3b9bfe785cf11f68e25ffa6e9f536b9"`
Dec 06 16:44:03.541 INFO [stdout] 6f799c6f3591dd3d8438858df9d40323f3b9bfe785cf11f68e25ffa6e9f536b9
Dec 06 16:44:03.544 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-5/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-5/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 06 16:44:03.856 INFO [stdout] 349b39784f5cc8aafa124438a0f59456f92e4667cf80cc0f496fa7a8d77bfc36
Dec 06 16:44:03.864 INFO running `"docker" "start" "-a" "349b39784f5cc8aafa124438a0f59456f92e4667cf80cc0f496fa7a8d77bfc36"`
Dec 06 16:44:04.708 INFO [stderr] usermod: no changes
Dec 06 16:44:04.847 INFO [stderr]    Compiling yacrd v0.4.1 (/source)
Dec 06 16:44:12.244 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.51s
Dec 06 16:44:12.253 INFO [stderr] su: No module specific data is present
Dec 06 16:44:12.505 INFO running `"docker" "inspect" "349b39784f5cc8aafa124438a0f59456f92e4667cf80cc0f496fa7a8d77bfc36"`
Dec 06 16:44:12.554 INFO running `"docker" "rm" "-f" "349b39784f5cc8aafa124438a0f59456f92e4667cf80cc0f496fa7a8d77bfc36"`
Dec 06 16:44:12.606 INFO [stdout] 349b39784f5cc8aafa124438a0f59456f92e4667cf80cc0f496fa7a8d77bfc36
Dec 06 16:44:12.607 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-5/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-5/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 06 16:44:12.788 INFO [stdout] a64cf6b6320473d6ef60d4aed16d4ccf1011e8fb12ad7effff01adb644b5f100
Dec 06 16:44:12.792 INFO running `"docker" "start" "-a" "a64cf6b6320473d6ef60d4aed16d4ccf1011e8fb12ad7effff01adb644b5f100"`
Dec 06 16:44:13.375 INFO [stderr] usermod: no changes
Dec 06 16:44:13.485 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.09s
Dec 06 16:44:13.501 INFO [stderr]      Running /target/debug/deps/yacrd-1bdc9fc7460fa8dd
Dec 06 16:44:13.503 INFO [stdout] 
Dec 06 16:44:13.503 INFO [stdout] running 32 tests
Dec 06 16:44:13.504 INFO [stdout] test chimera::test::notcovered_overlap_extremity ... ok
Dec 06 16:44:13.505 INFO [stdout] test chimera::test::notcovered_prior_to_chimera ... ok
Dec 06 16:44:13.506 INFO [stdout] test file::test::compression_from_file ... ok
Dec 06 16:44:13.508 INFO [stdout] test file::test::compression_from_input_or_cli ... ok
Dec 06 16:44:13.509 INFO [stdout] test io::mhap::test::read ... ok
Dec 06 16:44:13.509 INFO [stdout] test chimera::test::find_chimera_cov_1 ... ok
Dec 06 16:44:13.517 INFO [stdout] test chimera::test::find_chimera ... ok
Dec 06 16:44:13.518 INFO [stdout] test chimera::test::formating_gap ... ok
Dec 06 16:44:13.518 INFO [stdout] test io::mhap::test::write ... ok
Dec 06 16:44:13.518 INFO [stdout] test chimera::test::find_chimera_mhap_min_mers_float ... ok
Dec 06 16:44:13.519 INFO [stdout] test chimera::test::find_not_covered ... ok
Dec 06 16:44:13.520 INFO [stdout] test chimera::test::find_chimera_json_output ... ok
Dec 06 16:44:13.520 INFO [stdout] test io::paf::test::read_sam_field ... ok
Dec 06 16:44:13.520 INFO [stdout] test io::paf::test::write ... ok
Dec 06 16:44:13.520 INFO [stdout] test io::paf::test::read ... ok
Dec 06 16:44:13.520 INFO [stdout] test io::paf::test::write_sam_field ... ok
Dec 06 16:44:13.520 INFO [stdout] test postdetection::fasta::test::fasta_shorter_than_position ... ok
Dec 06 16:44:13.520 INFO [stdout] test postdetection::fasta::test::split ... ok
Dec 06 16:44:13.520 INFO [stdout] test postdetection::fasta::test::filtred ... ok
Dec 06 16:44:13.520 INFO [stdout] test postdetection::fasta::test::extracted ... ok
Dec 06 16:44:13.520 INFO [stdout] test postdetection::fastq::test::filtred ... ok
Dec 06 16:44:13.521 INFO [stdout] test chimera::test::mapping2read2mapping ... ok
Dec 06 16:44:13.521 INFO [stdout] test postdetection::fastq::test::fastq ... ok
Dec 06 16:44:13.522 INFO [stdout] test postdetection::paf::test::extracted ... ok
Dec 06 16:44:13.522 INFO [stdout] test utils::test::filename_based ... ok
Dec 06 16:44:13.522 INFO [stdout] test utils::test::filename_mapping_only ... ok
Dec 06 16:44:13.522 INFO [stdout] test utils::test::filename_based_compressed ... ok
Dec 06 16:44:13.523 INFO [stdout] test postdetection::mhap::test::extracted ... ok
Dec 06 16:44:13.524 INFO [stdout] test postdetection::mhap::test::filtred ... ok
Dec 06 16:44:13.524 INFO [stdout] test postdetection::fastq::test::extracted ... ok
Dec 06 16:44:13.525 INFO [stdout] test postdetection::paf::test::filtred ... ok
Dec 06 16:44:13.525 INFO [stdout] test postdetection::test::out_name ... ok
Dec 06 16:44:13.525 INFO [stdout] 
Dec 06 16:44:13.525 INFO [stdout] test result: ok. 32 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 06 16:44:13.525 INFO [stdout] 
Dec 06 16:44:13.528 INFO [stderr] su: No module specific data is present
Dec 06 16:44:13.806 INFO running `"docker" "inspect" "a64cf6b6320473d6ef60d4aed16d4ccf1011e8fb12ad7effff01adb644b5f100"`
Dec 06 16:44:13.886 INFO running `"docker" "rm" "-f" "a64cf6b6320473d6ef60d4aed16d4ccf1011e8fb12ad7effff01adb644b5f100"`
Dec 06 16:44:13.967 INFO [stdout] a64cf6b6320473d6ef60d4aed16d4ccf1011e8fb12ad7effff01adb644b5f100