Dec 07 11:16:50.237 INFO testing heme-0.3.1 against try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468 for pr-56514
Dec 07 11:16:50.237 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-1/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 07 11:16:50.468 INFO [stdout] e1b90da3179977092264dc692c884b33b1ae8e701e42e22d67c69955c12c7640
Dec 07 11:16:50.468 INFO running `"docker" "start" "-a" "e1b90da3179977092264dc692c884b33b1ae8e701e42e22d67c69955c12c7640"`
Dec 07 11:16:51.039 INFO [stderr] usermod: no changes
Dec 07 11:16:51.073 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 07 11:16:51.506 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 07 11:16:51.506 INFO [stderr]  --> src/sampling.rs:1:5
Dec 07 11:16:51.506 INFO [stderr]   |
Dec 07 11:16:51.506 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 07 11:16:51.506 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 07 11:16:51.506 INFO [stderr]   |
Dec 07 11:16:51.506 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 07 11:16:51.506 INFO [stderr] 
Dec 07 11:16:51.556 INFO [stderr] warning: unused variable: `protocol_name`
Dec 07 11:16:51.556 INFO [stderr]   --> src/sampling.rs:20:21
Dec 07 11:16:51.556 INFO [stderr]    |
Dec 07 11:16:51.556 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 07 11:16:51.556 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 07 11:16:51.556 INFO [stderr]    |
Dec 07 11:16:51.556 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 07 11:16:51.556 INFO [stderr] 
Dec 07 11:16:51.556 INFO [stderr] warning: unused variable: `a1`
Dec 07 11:16:51.556 INFO [stderr]   --> src/scoring.rs:24:39
Dec 07 11:16:51.556 INFO [stderr]    |
Dec 07 11:16:51.556 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 07 11:16:51.556 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 07 11:16:51.556 INFO [stderr] 
Dec 07 11:16:51.556 INFO [stderr] warning: unused variable: `a2`
Dec 07 11:16:51.556 INFO [stderr]   --> src/scoring.rs:24:50
Dec 07 11:16:51.556 INFO [stderr]    |
Dec 07 11:16:51.556 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 07 11:16:51.556 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 07 11:16:51.556 INFO [stderr] 
Dec 07 11:16:51.571 INFO [stderr] warning: field is never used: `atoms`
Dec 07 11:16:51.571 INFO [stderr]   --> src/conformation.rs:52:5
Dec 07 11:16:51.571 INFO [stderr]    |
Dec 07 11:16:51.571 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 07 11:16:51.571 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 07 11:16:51.571 INFO [stderr]    |
Dec 07 11:16:51.571 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 07 11:16:51.571 INFO [stderr] 
Dec 07 11:16:51.571 INFO [stderr] warning: field is never used: `residue_name`
Dec 07 11:16:51.571 INFO [stderr]   --> src/conformation.rs:53:5
Dec 07 11:16:51.571 INFO [stderr]    |
Dec 07 11:16:51.571 INFO [stderr] 53 |     residue_name: String,
Dec 07 11:16:51.571 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 07 11:16:51.571 INFO [stderr] 
Dec 07 11:16:51.572 INFO [stderr] warning: field is never used: `residue_index`
Dec 07 11:16:51.572 INFO [stderr]   --> src/conformation.rs:54:5
Dec 07 11:16:51.572 INFO [stderr]    |
Dec 07 11:16:51.572 INFO [stderr] 54 |     residue_index: i32,
Dec 07 11:16:51.572 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 07 11:16:51.572 INFO [stderr] 
Dec 07 11:16:52.599 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.54s
Dec 07 11:16:52.602 INFO [stderr] su: No module specific data is present
Dec 07 11:16:52.915 INFO running `"docker" "inspect" "e1b90da3179977092264dc692c884b33b1ae8e701e42e22d67c69955c12c7640"`
Dec 07 11:16:52.984 INFO running `"docker" "rm" "-f" "e1b90da3179977092264dc692c884b33b1ae8e701e42e22d67c69955c12c7640"`
Dec 07 11:16:53.052 INFO [stdout] e1b90da3179977092264dc692c884b33b1ae8e701e42e22d67c69955c12c7640
Dec 07 11:16:53.054 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-1/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 07 11:16:53.232 INFO [stdout] 6b9a6debfdba1d06facddfbec2207d23550e26b49d55ca23e63b0427ce454b7e
Dec 07 11:16:53.234 INFO running `"docker" "start" "-a" "6b9a6debfdba1d06facddfbec2207d23550e26b49d55ca23e63b0427ce454b7e"`
Dec 07 11:16:53.684 INFO [stderr] usermod: no changes
Dec 07 11:16:53.716 INFO [stderr]    Compiling heme v0.3.1 (/source)
Dec 07 11:16:54.368 INFO [stderr] warning: unused import: `std::collections::HashMap`
Dec 07 11:16:54.368 INFO [stderr]  --> src/sampling.rs:1:5
Dec 07 11:16:54.368 INFO [stderr]   |
Dec 07 11:16:54.368 INFO [stderr] 1 | use std::collections::HashMap; 
Dec 07 11:16:54.368 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Dec 07 11:16:54.368 INFO [stderr]   |
Dec 07 11:16:54.368 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Dec 07 11:16:54.368 INFO [stderr] 
Dec 07 11:16:54.416 INFO [stderr] warning: unused variable: `protocol_name`
Dec 07 11:16:54.416 INFO [stderr]   --> src/sampling.rs:20:21
Dec 07 11:16:54.416 INFO [stderr]    |
Dec 07 11:16:54.416 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Dec 07 11:16:54.416 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Dec 07 11:16:54.416 INFO [stderr]    |
Dec 07 11:16:54.416 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Dec 07 11:16:54.416 INFO [stderr] 
Dec 07 11:16:54.416 INFO [stderr] warning: unused variable: `a1`
Dec 07 11:16:54.416 INFO [stderr]   --> src/scoring.rs:24:39
Dec 07 11:16:54.416 INFO [stderr]    |
Dec 07 11:16:54.416 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 07 11:16:54.416 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Dec 07 11:16:54.416 INFO [stderr] 
Dec 07 11:16:54.416 INFO [stderr] warning: unused variable: `a2`
Dec 07 11:16:54.416 INFO [stderr]   --> src/scoring.rs:24:50
Dec 07 11:16:54.416 INFO [stderr]    |
Dec 07 11:16:54.416 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Dec 07 11:16:54.416 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Dec 07 11:16:54.416 INFO [stderr] 
Dec 07 11:16:54.438 INFO [stderr] warning: field is never used: `atoms`
Dec 07 11:16:54.438 INFO [stderr]   --> src/conformation.rs:52:5
Dec 07 11:16:54.438 INFO [stderr]    |
Dec 07 11:16:54.438 INFO [stderr] 52 |     atoms: Vec<Atom>,
Dec 07 11:16:54.438 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Dec 07 11:16:54.438 INFO [stderr]    |
Dec 07 11:16:54.438 INFO [stderr]    = note: #[warn(dead_code)] on by default
Dec 07 11:16:54.438 INFO [stderr] 
Dec 07 11:16:54.438 INFO [stderr] warning: field is never used: `residue_name`
Dec 07 11:16:54.438 INFO [stderr]   --> src/conformation.rs:53:5
Dec 07 11:16:54.438 INFO [stderr]    |
Dec 07 11:16:54.438 INFO [stderr] 53 |     residue_name: String,
Dec 07 11:16:54.438 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Dec 07 11:16:54.438 INFO [stderr] 
Dec 07 11:16:54.438 INFO [stderr] warning: field is never used: `residue_index`
Dec 07 11:16:54.438 INFO [stderr]   --> src/conformation.rs:54:5
Dec 07 11:16:54.438 INFO [stderr]    |
Dec 07 11:16:54.438 INFO [stderr] 54 |     residue_index: i32,
Dec 07 11:16:54.438 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Dec 07 11:16:54.438 INFO [stderr] 
Dec 07 11:16:54.448 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Dec 07 11:16:54.448 INFO [stderr]    --> src/io.rs:152:9
Dec 07 11:16:54.448 INFO [stderr]     |
Dec 07 11:16:54.448 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Dec 07 11:16:54.448 INFO [stderr] 153 | |
Dec 07 11:16:54.448 INFO [stderr] 154 | |             // bounds of N choose lN
Dec 07 11:16:54.448 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Dec 07 11:16:54.448 INFO [stderr] ...   |
Dec 07 11:16:54.448 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Dec 07 11:16:54.448 INFO [stderr] 162 | |         }
Dec 07 11:16:54.448 INFO [stderr]     | |_________^
Dec 07 11:16:54.448 INFO [stderr]     |
Dec 07 11:16:54.448 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Dec 07 11:16:54.448 INFO [stderr] 
Dec 07 11:16:55.031 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.33s
Dec 07 11:16:55.034 INFO [stderr] su: No module specific data is present
Dec 07 11:16:55.408 INFO running `"docker" "inspect" "6b9a6debfdba1d06facddfbec2207d23550e26b49d55ca23e63b0427ce454b7e"`
Dec 07 11:16:55.579 INFO running `"docker" "rm" "-f" "6b9a6debfdba1d06facddfbec2207d23550e26b49d55ca23e63b0427ce454b7e"`
Dec 07 11:16:55.765 INFO [stdout] 6b9a6debfdba1d06facddfbec2207d23550e26b49d55ca23e63b0427ce454b7e
Dec 07 11:16:55.770 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-1/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-1/pr-56514/try#6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6eb0fd3ac58f9b16bddb9924a17c3b6c156aa468-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 07 11:16:56.030 INFO [stdout] e204f7208d1636bfc55dab03cdcf804c52698f30392aae439dd65fe2def620c8
Dec 07 11:16:56.038 INFO running `"docker" "start" "-a" "e204f7208d1636bfc55dab03cdcf804c52698f30392aae439dd65fe2def620c8"`
Dec 07 11:16:56.411 INFO [stderr] usermod: no changes
Dec 07 11:16:56.437 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Dec 07 11:16:56.437 INFO [stderr]      Running /target/debug/deps/heme-6ccec0cc881f6200
Dec 07 11:16:56.441 INFO [stdout] 
Dec 07 11:16:56.441 INFO [stdout] running 4 tests
Dec 07 11:16:56.441 INFO [stdout] test io::tests::test_entropy_function ... ok
Dec 07 11:16:56.442 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Dec 07 11:16:56.442 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Dec 07 11:16:56.444 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Dec 07 11:16:56.444 INFO [stdout] 
Dec 07 11:16:56.444 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 07 11:16:56.444 INFO [stdout] 
Dec 07 11:16:56.444 INFO [stderr]      Running /target/debug/deps/heme-7e0b90e6fe9b7449
Dec 07 11:16:56.449 INFO [stdout] 
Dec 07 11:16:56.449 INFO [stdout] running 0 tests
Dec 07 11:16:56.449 INFO [stdout] 
Dec 07 11:16:56.449 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 07 11:16:56.449 INFO [stdout] 
Dec 07 11:16:56.449 INFO [stderr]    Doc-tests heme
Dec 07 11:16:57.133 INFO [stdout] 
Dec 07 11:16:57.133 INFO [stdout] running 1 test
Dec 07 11:16:58.040 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Dec 07 11:16:58.040 INFO [stdout] 
Dec 07 11:16:58.040 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Dec 07 11:16:58.040 INFO [stdout] 
Dec 07 11:16:58.048 INFO [stderr] su: No module specific data is present
Dec 07 11:16:58.382 INFO running `"docker" "inspect" "e204f7208d1636bfc55dab03cdcf804c52698f30392aae439dd65fe2def620c8"`
Dec 07 11:16:58.515 INFO running `"docker" "rm" "-f" "e204f7208d1636bfc55dab03cdcf804c52698f30392aae439dd65fe2def620c8"`
Dec 07 11:16:58.587 INFO [stdout] e204f7208d1636bfc55dab03cdcf804c52698f30392aae439dd65fe2def620c8