Dec 06 08:54:15.139 INFO testing TuBieJun/stat_mut_sampleratio against master#906deae0790bd18681b937fe9a141a3c26cf1855 for pr-56514 Dec 06 08:54:15.139 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-2/master#906deae0790bd18681b937fe9a141a3c26cf1855:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56514/master#906deae0790bd18681b937fe9a141a3c26cf1855:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +906deae0790bd18681b937fe9a141a3c26cf1855-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Dec 06 08:54:15.625 INFO [stdout] 656c21970cfed53ea620c94a1f3ef1dcbd93fd3c651f8483f2253c5d887629cc Dec 06 08:54:15.627 INFO running `"docker" "start" "-a" "656c21970cfed53ea620c94a1f3ef1dcbd93fd3c651f8483f2253c5d887629cc"` Dec 06 08:54:17.613 INFO [stderr] usermod: no changes Dec 06 08:54:17.744 INFO [stderr] Compiling stat_germline_pos v0.1.0 (/source) Dec 06 08:54:18.720 INFO [stderr] warning: unused import: `SubCommand` Dec 06 08:54:18.721 INFO [stderr] --> src/main.rs:9:22 Dec 06 08:54:18.721 INFO [stderr] | Dec 06 08:54:18.721 INFO [stderr] 9 | use clap::{Arg, App, SubCommand}; Dec 06 08:54:18.722 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:18.722 INFO [stderr] | Dec 06 08:54:18.722 INFO [stderr] = note: #[warn(unused_imports)] on by default Dec 06 08:54:18.722 INFO [stderr] Dec 06 08:54:18.856 INFO [stderr] warning: variable does not need to be mutable Dec 06 08:54:18.856 INFO [stderr] --> src/main.rs:18:9 Dec 06 08:54:18.857 INFO [stderr] | Dec 06 08:54:18.857 INFO [stderr] 18 | let mut f = File::open(vcf_l) Dec 06 08:54:18.857 INFO [stderr] | ----^ Dec 06 08:54:18.857 INFO [stderr] | | Dec 06 08:54:18.858 INFO [stderr] | help: remove this `mut` Dec 06 08:54:18.858 INFO [stderr] | Dec 06 08:54:18.858 INFO [stderr] = note: #[warn(unused_mut)] on by default Dec 06 08:54:18.859 INFO [stderr] Dec 06 08:54:18.868 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:18.869 INFO [stderr] --> src/main.rs:13:13 Dec 06 08:54:18.869 INFO [stderr] | Dec 06 08:54:18.869 INFO [stderr] 13 | D_germline:&mut HashMap>) -> u32 { Dec 06 08:54:18.869 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:18.869 INFO [stderr] | Dec 06 08:54:18.870 INFO [stderr] = note: #[warn(non_snake_case)] on by default Dec 06 08:54:18.870 INFO [stderr] Dec 06 08:54:18.870 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:18.870 INFO [stderr] --> src/main.rs:96:53 Dec 06 08:54:18.870 INFO [stderr] | Dec 06 08:54:18.870 INFO [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { Dec 06 08:54:18.870 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:18.870 INFO [stderr] Dec 06 08:54:18.877 INFO [stderr] warning: unused `std::result::Result` that must be used Dec 06 08:54:18.877 INFO [stderr] --> src/main.rs:100:5 Dec 06 08:54:18.877 INFO [stderr] | Dec 06 08:54:18.877 INFO [stderr] 100 | writer.write(header.as_bytes()); Dec 06 08:54:18.877 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 06 08:54:18.877 INFO [stderr] | Dec 06 08:54:18.877 INFO [stderr] = note: #[warn(unused_must_use)] on by default Dec 06 08:54:18.877 INFO [stderr] = note: this `Result` may be an `Err` variant, which should be handled Dec 06 08:54:18.877 INFO [stderr] Dec 06 08:54:18.877 INFO [stderr] warning: unused `std::result::Result` that must be used Dec 06 08:54:18.877 INFO [stderr] --> src/main.rs:112:9 Dec 06 08:54:18.877 INFO [stderr] | Dec 06 08:54:18.877 INFO [stderr] 112 | writer.write(info.as_bytes()); Dec 06 08:54:18.877 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 06 08:54:18.877 INFO [stderr] | Dec 06 08:54:18.877 INFO [stderr] = note: this `Result` may be an `Err` variant, which should be handled Dec 06 08:54:18.877 INFO [stderr] Dec 06 08:54:18.877 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:18.877 INFO [stderr] --> src/main.rs:155:9 Dec 06 08:54:18.877 INFO [stderr] | Dec 06 08:54:18.877 INFO [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); Dec 06 08:54:18.877 INFO [stderr] | ^^^^^^^^^^^^^^ Dec 06 08:54:18.877 INFO [stderr] Dec 06 08:54:20.962 INFO [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3.31s Dec 06 08:54:20.966 INFO [stderr] su: No module specific data is present Dec 06 08:54:22.603 INFO running `"docker" "inspect" "656c21970cfed53ea620c94a1f3ef1dcbd93fd3c651f8483f2253c5d887629cc"` Dec 06 08:54:22.898 INFO running `"docker" "rm" "-f" "656c21970cfed53ea620c94a1f3ef1dcbd93fd3c651f8483f2253c5d887629cc"` Dec 06 08:54:23.344 INFO [stdout] 656c21970cfed53ea620c94a1f3ef1dcbd93fd3c651f8483f2253c5d887629cc Dec 06 08:54:23.350 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-2/master#906deae0790bd18681b937fe9a141a3c26cf1855:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56514/master#906deae0790bd18681b937fe9a141a3c26cf1855:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +906deae0790bd18681b937fe9a141a3c26cf1855-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Dec 06 08:54:23.817 INFO [stdout] e6e1c6e99d107e50ae5745f2c516cb1138371f4b60d19a6c4b7be5a345762cb1 Dec 06 08:54:23.819 INFO running `"docker" "start" "-a" "e6e1c6e99d107e50ae5745f2c516cb1138371f4b60d19a6c4b7be5a345762cb1"` Dec 06 08:54:26.911 INFO [stderr] usermod: no changes Dec 06 08:54:27.029 INFO [stderr] Compiling stat_germline_pos v0.1.0 (/source) Dec 06 08:54:27.851 INFO [stderr] warning: unused import: `SubCommand` Dec 06 08:54:27.852 INFO [stderr] --> src/main.rs:9:22 Dec 06 08:54:27.852 INFO [stderr] | Dec 06 08:54:27.852 INFO [stderr] 9 | use clap::{Arg, App, SubCommand}; Dec 06 08:54:27.852 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:27.853 INFO [stderr] | Dec 06 08:54:27.853 INFO [stderr] = note: #[warn(unused_imports)] on by default Dec 06 08:54:27.853 INFO [stderr] Dec 06 08:54:27.936 INFO [stderr] warning: variable does not need to be mutable Dec 06 08:54:27.936 INFO [stderr] --> src/main.rs:18:9 Dec 06 08:54:27.937 INFO [stderr] | Dec 06 08:54:27.937 INFO [stderr] 18 | let mut f = File::open(vcf_l) Dec 06 08:54:27.937 INFO [stderr] | ----^ Dec 06 08:54:27.937 INFO [stderr] | | Dec 06 08:54:27.937 INFO [stderr] | help: remove this `mut` Dec 06 08:54:27.938 INFO [stderr] | Dec 06 08:54:27.938 INFO [stderr] = note: #[warn(unused_mut)] on by default Dec 06 08:54:27.938 INFO [stderr] Dec 06 08:54:27.950 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:27.951 INFO [stderr] --> src/main.rs:13:13 Dec 06 08:54:27.951 INFO [stderr] | Dec 06 08:54:27.951 INFO [stderr] 13 | D_germline:&mut HashMap>) -> u32 { Dec 06 08:54:27.952 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:27.952 INFO [stderr] | Dec 06 08:54:27.952 INFO [stderr] = note: #[warn(non_snake_case)] on by default Dec 06 08:54:27.952 INFO [stderr] Dec 06 08:54:27.953 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:27.953 INFO [stderr] --> src/main.rs:96:53 Dec 06 08:54:27.953 INFO [stderr] | Dec 06 08:54:27.953 INFO [stderr] 96 | fn out_info(out_file:&str, panel_list:&Vec, D_germline:&HashMap>, sample_num_list:&Vec) { Dec 06 08:54:27.953 INFO [stderr] | ^^^^^^^^^^ Dec 06 08:54:27.953 INFO [stderr] Dec 06 08:54:27.972 INFO [stderr] warning: unused `std::result::Result` that must be used Dec 06 08:54:27.972 INFO [stderr] --> src/main.rs:100:5 Dec 06 08:54:27.972 INFO [stderr] | Dec 06 08:54:27.972 INFO [stderr] 100 | writer.write(header.as_bytes()); Dec 06 08:54:27.972 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 06 08:54:27.972 INFO [stderr] | Dec 06 08:54:27.972 INFO [stderr] = note: #[warn(unused_must_use)] on by default Dec 06 08:54:27.972 INFO [stderr] = note: this `Result` may be an `Err` variant, which should be handled Dec 06 08:54:27.972 INFO [stderr] Dec 06 08:54:27.972 INFO [stderr] warning: unused `std::result::Result` that must be used Dec 06 08:54:27.972 INFO [stderr] --> src/main.rs:112:9 Dec 06 08:54:27.972 INFO [stderr] | Dec 06 08:54:27.972 INFO [stderr] 112 | writer.write(info.as_bytes()); Dec 06 08:54:27.972 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 06 08:54:27.972 INFO [stderr] | Dec 06 08:54:27.972 INFO [stderr] = note: this `Result` may be an `Err` variant, which should be handled Dec 06 08:54:27.972 INFO [stderr] Dec 06 08:54:27.973 INFO [stderr] warning: variable `D_germline` should have a snake case name such as `d_germline` Dec 06 08:54:27.973 INFO [stderr] --> src/main.rs:155:9 Dec 06 08:54:27.973 INFO [stderr] | Dec 06 08:54:27.973 INFO [stderr] 155 | let mut D_germline:HashMap> = HashMap::new(); Dec 06 08:54:27.973 INFO [stderr] | ^^^^^^^^^^^^^^ Dec 06 08:54:27.973 INFO [stderr] Dec 06 08:54:28.325 INFO [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.39s Dec 06 08:54:28.330 INFO [stderr] su: No module specific data is present Dec 06 08:54:29.946 INFO running `"docker" "inspect" "e6e1c6e99d107e50ae5745f2c516cb1138371f4b60d19a6c4b7be5a345762cb1"` Dec 06 08:54:30.354 INFO running `"docker" "rm" "-f" "e6e1c6e99d107e50ae5745f2c516cb1138371f4b60d19a6c4b7be5a345762cb1"` Dec 06 08:54:30.716 INFO [stdout] e6e1c6e99d107e50ae5745f2c516cb1138371f4b60d19a6c4b7be5a345762cb1 Dec 06 08:54:30.722 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-56514/worker-2/master#906deae0790bd18681b937fe9a141a3c26cf1855:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-56514/master#906deae0790bd18681b937fe9a141a3c26cf1855:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +906deae0790bd18681b937fe9a141a3c26cf1855-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Dec 06 08:54:31.228 INFO [stdout] 6f613b2688f5635ca6305ebeaa1945f5644c6bae0e7f40f77abec9d316c52247 Dec 06 08:54:31.230 INFO running `"docker" "start" "-a" "6f613b2688f5635ca6305ebeaa1945f5644c6bae0e7f40f77abec9d316c52247"` Dec 06 08:54:34.148 INFO [stderr] usermod: no changes Dec 06 08:54:34.257 INFO [stderr] Finished dev [unoptimized + debuginfo] target(s) in 0.08s Dec 06 08:54:34.264 INFO [stderr] Running /target/debug/deps/stat_germline_pos-506b30a7ab9ebd61 Dec 06 08:54:34.272 INFO [stdout] Dec 06 08:54:34.272 INFO [stdout] running 0 tests Dec 06 08:54:34.272 INFO [stdout] Dec 06 08:54:34.272 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out Dec 06 08:54:34.272 INFO [stdout] Dec 06 08:54:34.273 INFO [stderr] su: No module specific data is present Dec 06 08:54:35.680 INFO running `"docker" "inspect" "6f613b2688f5635ca6305ebeaa1945f5644c6bae0e7f40f77abec9d316c52247"` Dec 06 08:54:36.102 INFO running `"docker" "rm" "-f" "6f613b2688f5635ca6305ebeaa1945f5644c6bae0e7f40f77abec9d316c52247"` Dec 06 08:54:36.476 INFO [stdout] 6f613b2688f5635ca6305ebeaa1945f5644c6bae0e7f40f77abec9d316c52247