Nov 18 09:48:03.717 INFO testing heme-0.3.1 against try#2e026d6e5d7621634147ad4c8074f1d964dbb1be for pr-55982
Nov 18 09:48:03.717 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-6/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:03.896 INFO [stdout] f8a70d40ec3bcaaa9635859bf1862ec528e6c1050f6c7c15aa28ac781dd08c4f
Nov 18 09:48:03.898 INFO running `"docker" "start" "-a" "f8a70d40ec3bcaaa9635859bf1862ec528e6c1050f6c7c15aa28ac781dd08c4f"`
Nov 18 09:48:04.245 INFO [stderr] usermod: no changes
Nov 18 09:48:04.275 INFO [stderr]    Compiling heme v0.3.1 (/source)
Nov 18 09:48:04.603 INFO [stderr] warning: unused import: `std::collections::HashMap`
Nov 18 09:48:04.603 INFO [stderr]  --> src/sampling.rs:1:5
Nov 18 09:48:04.603 INFO [stderr]   |
Nov 18 09:48:04.603 INFO [stderr] 1 | use std::collections::HashMap; 
Nov 18 09:48:04.603 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.603 INFO [stderr]   |
Nov 18 09:48:04.603 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Nov 18 09:48:04.603 INFO [stderr] 
Nov 18 09:48:04.644 INFO [stderr] warning: unused variable: `protocol_name`
Nov 18 09:48:04.644 INFO [stderr]   --> src/sampling.rs:20:21
Nov 18 09:48:04.644 INFO [stderr]    |
Nov 18 09:48:04.644 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 18 09:48:04.644 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 18 09:48:04.644 INFO [stderr]    |
Nov 18 09:48:04.644 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Nov 18 09:48:04.644 INFO [stderr] 
Nov 18 09:48:04.644 INFO [stderr] warning: unused variable: `a1`
Nov 18 09:48:04.644 INFO [stderr]   --> src/scoring.rs:24:39
Nov 18 09:48:04.644 INFO [stderr]    |
Nov 18 09:48:04.644 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:04.644 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Nov 18 09:48:04.644 INFO [stderr] 
Nov 18 09:48:04.647 INFO [stderr] warning: unused variable: `a2`
Nov 18 09:48:04.647 INFO [stderr]   --> src/scoring.rs:24:50
Nov 18 09:48:04.647 INFO [stderr]    |
Nov 18 09:48:04.647 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:04.647 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Nov 18 09:48:04.647 INFO [stderr] 
Nov 18 09:48:04.658 INFO [stderr] warning: field is never used: `atoms`
Nov 18 09:48:04.658 INFO [stderr]   --> src/conformation.rs:52:5
Nov 18 09:48:04.658 INFO [stderr]    |
Nov 18 09:48:04.658 INFO [stderr] 52 |     atoms: Vec<Atom>,
Nov 18 09:48:04.658 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Nov 18 09:48:04.658 INFO [stderr]    |
Nov 18 09:48:04.658 INFO [stderr]    = note: #[warn(dead_code)] on by default
Nov 18 09:48:04.658 INFO [stderr] 
Nov 18 09:48:04.658 INFO [stderr] warning: field is never used: `residue_name`
Nov 18 09:48:04.658 INFO [stderr]   --> src/conformation.rs:53:5
Nov 18 09:48:04.658 INFO [stderr]    |
Nov 18 09:48:04.658 INFO [stderr] 53 |     residue_name: String,
Nov 18 09:48:04.658 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.659 INFO [stderr] 
Nov 18 09:48:04.659 INFO [stderr] warning: field is never used: `residue_index`
Nov 18 09:48:04.659 INFO [stderr]   --> src/conformation.rs:54:5
Nov 18 09:48:04.659 INFO [stderr]    |
Nov 18 09:48:04.659 INFO [stderr] 54 |     residue_index: i32,
Nov 18 09:48:04.659 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.659 INFO [stderr] 
Nov 18 09:48:06.153 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.89s
Nov 18 09:48:06.165 INFO [stderr] su: No module specific data is present
Nov 18 09:48:07.169 INFO running `"docker" "inspect" "f8a70d40ec3bcaaa9635859bf1862ec528e6c1050f6c7c15aa28ac781dd08c4f"`
Nov 18 09:48:07.497 INFO running `"docker" "rm" "-f" "f8a70d40ec3bcaaa9635859bf1862ec528e6c1050f6c7c15aa28ac781dd08c4f"`
Nov 18 09:48:07.871 INFO [stdout] f8a70d40ec3bcaaa9635859bf1862ec528e6c1050f6c7c15aa28ac781dd08c4f
Nov 18 09:48:07.879 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-6/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:08.319 INFO [stdout] cdf958e1b7cb79ec33ed13b1ac95096a7fbe41d2b97f2c6a82c75b688981395d
Nov 18 09:48:08.325 INFO running `"docker" "start" "-a" "cdf958e1b7cb79ec33ed13b1ac95096a7fbe41d2b97f2c6a82c75b688981395d"`
Nov 18 09:48:09.779 INFO [stderr] usermod: no changes
Nov 18 09:48:09.843 INFO [stderr]    Compiling heme v0.3.1 (/source)
Nov 18 09:48:10.567 INFO [stderr] warning: unused import: `std::collections::HashMap`
Nov 18 09:48:10.568 INFO [stderr]  --> src/sampling.rs:1:5
Nov 18 09:48:10.569 INFO [stderr]   |
Nov 18 09:48:10.569 INFO [stderr] 1 | use std::collections::HashMap; 
Nov 18 09:48:10.570 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.571 INFO [stderr]   |
Nov 18 09:48:10.571 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Nov 18 09:48:10.572 INFO [stderr] 
Nov 18 09:48:10.635 INFO [stderr] warning: unused variable: `protocol_name`
Nov 18 09:48:10.636 INFO [stderr]   --> src/sampling.rs:20:21
Nov 18 09:48:10.637 INFO [stderr]    |
Nov 18 09:48:10.637 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 18 09:48:10.638 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 18 09:48:10.639 INFO [stderr]    |
Nov 18 09:48:10.639 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Nov 18 09:48:10.640 INFO [stderr] 
Nov 18 09:48:10.640 INFO [stderr] warning: unused variable: `a1`
Nov 18 09:48:10.641 INFO [stderr]   --> src/scoring.rs:24:39
Nov 18 09:48:10.642 INFO [stderr]    |
Nov 18 09:48:10.642 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:10.643 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Nov 18 09:48:10.644 INFO [stderr] 
Nov 18 09:48:10.644 INFO [stderr] warning: unused variable: `a2`
Nov 18 09:48:10.645 INFO [stderr]   --> src/scoring.rs:24:50
Nov 18 09:48:10.646 INFO [stderr]    |
Nov 18 09:48:10.646 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:10.646 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Nov 18 09:48:10.647 INFO [stderr] 
Nov 18 09:48:10.659 INFO [stderr] warning: field is never used: `atoms`
Nov 18 09:48:10.659 INFO [stderr]   --> src/conformation.rs:52:5
Nov 18 09:48:10.659 INFO [stderr]    |
Nov 18 09:48:10.659 INFO [stderr] 52 |     atoms: Vec<Atom>,
Nov 18 09:48:10.659 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Nov 18 09:48:10.659 INFO [stderr]    |
Nov 18 09:48:10.659 INFO [stderr]    = note: #[warn(dead_code)] on by default
Nov 18 09:48:10.659 INFO [stderr] 
Nov 18 09:48:10.659 INFO [stderr] warning: field is never used: `residue_name`
Nov 18 09:48:10.659 INFO [stderr]   --> src/conformation.rs:53:5
Nov 18 09:48:10.659 INFO [stderr]    |
Nov 18 09:48:10.660 INFO [stderr] 53 |     residue_name: String,
Nov 18 09:48:10.660 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.660 INFO [stderr] 
Nov 18 09:48:10.660 INFO [stderr] warning: field is never used: `residue_index`
Nov 18 09:48:10.660 INFO [stderr]   --> src/conformation.rs:54:5
Nov 18 09:48:10.660 INFO [stderr]    |
Nov 18 09:48:10.660 INFO [stderr] 54 |     residue_index: i32,
Nov 18 09:48:10.661 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.661 INFO [stderr] 
Nov 18 09:48:10.670 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Nov 18 09:48:10.671 INFO [stderr]    --> src/io.rs:152:9
Nov 18 09:48:10.671 INFO [stderr]     |
Nov 18 09:48:10.671 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Nov 18 09:48:10.671 INFO [stderr] 153 | |
Nov 18 09:48:10.672 INFO [stderr] 154 | |             // bounds of N choose lN
Nov 18 09:48:10.672 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Nov 18 09:48:10.672 INFO [stderr] ...   |
Nov 18 09:48:10.672 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Nov 18 09:48:10.673 INFO [stderr] 162 | |         }
Nov 18 09:48:10.673 INFO [stderr]     | |_________^
Nov 18 09:48:10.673 INFO [stderr]     |
Nov 18 09:48:10.673 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Nov 18 09:48:10.673 INFO [stderr] 
Nov 18 09:48:11.100 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.30s
Nov 18 09:48:11.102 INFO [stderr] su: No module specific data is present
Nov 18 09:48:11.378 INFO running `"docker" "inspect" "cdf958e1b7cb79ec33ed13b1ac95096a7fbe41d2b97f2c6a82c75b688981395d"`
Nov 18 09:48:11.525 INFO running `"docker" "rm" "-f" "cdf958e1b7cb79ec33ed13b1ac95096a7fbe41d2b97f2c6a82c75b688981395d"`
Nov 18 09:48:11.697 INFO [stdout] cdf958e1b7cb79ec33ed13b1ac95096a7fbe41d2b97f2c6a82c75b688981395d
Nov 18 09:48:11.700 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-6/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:11.868 INFO [stdout] 81239ab3260a5e8eeeeb938cf03b6879ff0b5102dd28b2b67a9c3a497f6bdd8b
Nov 18 09:48:11.872 INFO running `"docker" "start" "-a" "81239ab3260a5e8eeeeb938cf03b6879ff0b5102dd28b2b67a9c3a497f6bdd8b"`
Nov 18 09:48:12.231 INFO [stderr] usermod: no changes
Nov 18 09:48:12.257 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Nov 18 09:48:12.257 INFO [stderr]      Running /target/debug/deps/heme-9c5329dcc5e80547
Nov 18 09:48:12.259 INFO [stdout] 
Nov 18 09:48:12.259 INFO [stdout] running 4 tests
Nov 18 09:48:12.260 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Nov 18 09:48:12.260 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Nov 18 09:48:12.260 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Nov 18 09:48:12.261 INFO [stdout] test io::tests::test_entropy_function ... ok
Nov 18 09:48:12.261 INFO [stdout] 
Nov 18 09:48:12.261 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:12.261 INFO [stdout] 
Nov 18 09:48:12.261 INFO [stderr]      Running /target/debug/deps/heme-9e6a4896216c12e7
Nov 18 09:48:12.262 INFO [stdout] 
Nov 18 09:48:12.262 INFO [stdout] running 0 tests
Nov 18 09:48:12.262 INFO [stdout] 
Nov 18 09:48:12.262 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:12.262 INFO [stdout] 
Nov 18 09:48:12.263 INFO [stderr]    Doc-tests heme
Nov 18 09:48:12.961 INFO [stdout] 
Nov 18 09:48:12.961 INFO [stdout] running 1 test
Nov 18 09:48:13.754 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Nov 18 09:48:13.754 INFO [stdout] 
Nov 18 09:48:13.754 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:13.754 INFO [stdout] 
Nov 18 09:48:13.762 INFO [stderr] su: No module specific data is present
Nov 18 09:48:14.249 INFO running `"docker" "inspect" "81239ab3260a5e8eeeeb938cf03b6879ff0b5102dd28b2b67a9c3a497f6bdd8b"`
Nov 18 09:48:14.424 INFO running `"docker" "rm" "-f" "81239ab3260a5e8eeeeb938cf03b6879ff0b5102dd28b2b67a9c3a497f6bdd8b"`
Nov 18 09:48:14.555 INFO [stdout] 81239ab3260a5e8eeeeb938cf03b6879ff0b5102dd28b2b67a9c3a497f6bdd8b