Nov 18 19:39:22.187 INFO testing bio-0.22.0 against try#2e026d6e5d7621634147ad4c8074f1d964dbb1be for pr-55982
Nov 18 19:39:22.189 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-0/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-0/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 19:39:22.576 INFO [stdout] cd7c8ff19431bcd2ef20676b33c89ffe5656fba0f8565f86f5585d96e484196a
Nov 18 19:39:22.579 INFO running `"docker" "start" "-a" "cd7c8ff19431bcd2ef20676b33c89ffe5656fba0f8565f86f5585d96e484196a"`
Nov 18 19:39:23.801 INFO [stderr] usermod: no changes
Nov 18 19:39:24.015 INFO [stderr]    Compiling bv v0.7.4
Nov 18 19:39:24.036 INFO [stderr]    Compiling ndarray v0.9.1
Nov 18 19:39:24.036 INFO [stderr]    Compiling multimap v0.4.0
Nov 18 19:39:24.036 INFO [stderr]    Compiling bio-types v0.4.0
Nov 18 19:39:24.036 INFO [stderr]    Compiling csv v1.0.2
Nov 18 19:39:24.036 INFO [stderr]    Compiling vec_map v0.8.1
Nov 18 19:39:39.351 INFO [stderr]    Compiling bio v0.22.0 (/source)
Nov 18 19:39:43.119 INFO [stderr] warning: unused `#[macro_use]` import
Nov 18 19:39:43.125 INFO [stderr]    --> src/lib.rs:103:1
Nov 18 19:39:43.125 INFO [stderr]     |
Nov 18 19:39:43.125 INFO [stderr] 103 | #[macro_use]
Nov 18 19:39:43.125 INFO [stderr]     | ^^^^^^^^^^^^
Nov 18 19:39:43.125 INFO [stderr]     |
Nov 18 19:39:43.125 INFO [stderr]     = note: #[warn(unused_imports)] on by default
Nov 18 19:39:43.125 INFO [stderr] 
Nov 18 19:39:43.125 INFO [stderr] warning: unused `#[macro_use]` import
Nov 18 19:39:43.125 INFO [stderr]    --> src/lib.rs:117:1
Nov 18 19:39:43.125 INFO [stderr]     |
Nov 18 19:39:43.125 INFO [stderr] 117 | #[macro_use]
Nov 18 19:39:43.125 INFO [stderr]     | ^^^^^^^^^^^^
Nov 18 19:39:43.125 INFO [stderr] 
Nov 18 19:39:51.160 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 27.33s
Nov 18 19:39:51.161 INFO [stderr] su: No module specific data is present
Nov 18 19:39:51.676 INFO running `"docker" "inspect" "cd7c8ff19431bcd2ef20676b33c89ffe5656fba0f8565f86f5585d96e484196a"`
Nov 18 19:39:51.922 INFO running `"docker" "rm" "-f" "cd7c8ff19431bcd2ef20676b33c89ffe5656fba0f8565f86f5585d96e484196a"`
Nov 18 19:39:52.255 INFO [stdout] cd7c8ff19431bcd2ef20676b33c89ffe5656fba0f8565f86f5585d96e484196a
Nov 18 19:39:52.263 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-0/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-0/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 19:39:52.724 INFO [stdout] fd2445b17b204e6abafb7731200d80f9de9223e255c110d4e27b6abe907f9b4f
Nov 18 19:39:52.728 INFO running `"docker" "start" "-a" "fd2445b17b204e6abafb7731200d80f9de9223e255c110d4e27b6abe907f9b4f"`
Nov 18 19:39:54.463 INFO [stderr] usermod: no changes
Nov 18 19:39:54.567 INFO [stderr]    Compiling bio v0.22.0 (/source)
Nov 18 19:40:21.486 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 27.04s
Nov 18 19:40:21.501 INFO [stderr] su: No module specific data is present
Nov 18 19:40:21.969 INFO running `"docker" "inspect" "fd2445b17b204e6abafb7731200d80f9de9223e255c110d4e27b6abe907f9b4f"`
Nov 18 19:40:22.110 INFO running `"docker" "rm" "-f" "fd2445b17b204e6abafb7731200d80f9de9223e255c110d4e27b6abe907f9b4f"`
Nov 18 19:40:22.464 INFO [stdout] fd2445b17b204e6abafb7731200d80f9de9223e255c110d4e27b6abe907f9b4f
Nov 18 19:40:22.471 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-0/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-0/pr-55982/try#2e026d6e5d7621634147ad4c8074f1d964dbb1be:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +2e026d6e5d7621634147ad4c8074f1d964dbb1be-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 19:40:22.751 INFO [stdout] 68385fdaea05644809d2d7c1b8d19c44cbee934eed3739ac1e4e35da1ff1fa9d
Nov 18 19:40:22.753 INFO running `"docker" "start" "-a" "68385fdaea05644809d2d7c1b8d19c44cbee934eed3739ac1e4e35da1ff1fa9d"`
Nov 18 19:40:24.023 INFO [stderr] usermod: no changes
Nov 18 19:40:24.223 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.17s
Nov 18 19:40:24.236 INFO [stderr]      Running /target/debug/deps/bio-a299515c62dbba82
Nov 18 19:40:24.238 INFO [stdout] 
Nov 18 19:40:24.238 INFO [stdout] running 227 tests
Nov 18 19:40:24.243 INFO [stdout] test alignment::distance::tests::test_hamming_dist_good ... ok
Nov 18 19:40:24.243 INFO [stdout] test alignment::pairwise::banded::banded::test_band_add_entry ... ok
Nov 18 19:40:24.243 INFO [stdout] test alignment::pairwise::banded::banded::test_band_add_kmer ... ok
Nov 18 19:40:24.244 INFO [stdout] test alignment::pairwise::banded::banded::test_aligner_new ... ok
Nov 18 19:40:24.244 INFO [stdout] test alignment::distance::tests::test_levenshtein_dist ... ok
Nov 18 19:40:24.263 INFO [stdout] test alignment::pairwise::banded::banded::test_global ... ok
Nov 18 19:40:24.271 INFO [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins ... ok
Nov 18 19:40:24.279 INFO [stdout] test alignment::pairwise::banded::banded::test_blosum62 ... ok
Nov 18 19:40:24.279 INFO [stdout] test alignment::pairwise::banded::banded::test_global_affine_ins2 ... ok
Nov 18 19:40:24.280 INFO [stdout] test alignment::pairwise::banded::banded::test_global_right_del ... ok
Nov 18 19:40:24.280 INFO [stdout] test alignment::pairwise::banded::banded::test_insert_in_between_semiglobal ... ok
Nov 18 19:40:24.280 INFO [stdout] test alignment::pairwise::banded::banded::test_insert_only_semiglobal ... ok
Nov 18 19:40:24.281 INFO [stdout] test alignment::pairwise::banded::banded::test_issue11 ... ok
Nov 18 19:40:24.295 INFO [stdout] test alignment::pairwise::banded::banded::test_issue12_1 ... ok
Nov 18 19:40:24.296 INFO [stdout] test alignment::pairwise::banded::banded::test_issue12_2 ... ok
Nov 18 19:40:24.296 INFO [stdout] test alignment::pairwise::banded::banded::test_issue12_3 ... ok
Nov 18 19:40:24.331 INFO [stdout] test alignment::pairwise::banded::banded::test_left_aligned_del ... ok
Nov 18 19:40:24.343 INFO [stdout] test alignment::pairwise::banded::banded::test_left_aligned_ins ... ok
Nov 18 19:40:24.351 INFO [stdout] test alignment::pairwise::banded::banded::test_local ... ok
Nov 18 19:40:24.364 INFO [stdout] test alignment::pairwise::banded::banded::test_local_affine_ins2 ... ok
Nov 18 19:40:24.365 INFO [stdout] test alignment::pairwise::banded::banded::test_insertion ... ok
Nov 18 19:40:24.387 INFO [stdout] test alignment::pairwise::banded::banded::test_longer_string_all_operations ... ok
Nov 18 19:40:24.399 INFO [stdout] test alignment::pairwise::banded::banded::test_local_empty ... ok
Nov 18 19:40:24.399 INFO [stdout] test alignment::pairwise::banded::banded::test_band_starts_inside ... ok
Nov 18 19:40:24.439 INFO [stdout] test alignment::pairwise::banded::banded::test_deletion ... ok
Nov 18 19:40:24.439 INFO [stdout] test alignment::pairwise::banded::banded::test_overhangs3 ... ok
Nov 18 19:40:24.463 INFO [stdout] test alignment::pairwise::banded::banded::test_band_ends_inside ... ok
Nov 18 19:40:24.547 INFO [stdout] test alignment::pairwise::banded::banded::test_overhangs2 ... ok
Nov 18 19:40:24.547 INFO [stdout] test alignment::pairwise::banded::banded::test_semiglobal ... ok
Nov 18 19:40:24.555 INFO [stdout] test alignment::pairwise::banded::banded::test_band_is_fully_inside ... ok
Nov 18 19:40:24.555 INFO [stdout] test alignment::pairwise::banded::banded::test_semiglobal_simple ... ok
Nov 18 19:40:24.559 INFO [stdout] test alignment::pairwise::banded::banded::test_semiglobal_gap_open_lt_mismatch ... ok
Nov 18 19:40:24.579 INFO [stdout] test alignment::pairwise::banded::banded::test_overhangs1 ... ok
Nov 18 19:40:24.579 INFO [stdout] test alignment::pairwise::banded::banded::test_xclip_prefix_custom ... ok
Nov 18 19:40:24.611 INFO [stdout] test alignment::pairwise::banded::banded::test_xclip_suffix_custom ... ok
Nov 18 19:40:24.611 INFO [stdout] test alignment::pairwise::banded::banded::test_yclip_prefix_custom ... ok
Nov 18 19:40:24.611 INFO [stdout] test alignment::pairwise::banded::banded::test_overhangs4 ... ok
Nov 18 19:40:24.611 INFO [stdout] test alignment::pairwise::banded::banded::test_yclip_suffix_custom ... ok
Nov 18 19:40:24.635 INFO [stdout] test alignment::pairwise::tests::test_global ... ok
Nov 18 19:40:24.635 INFO [stdout] test alignment::pairwise::tests::test_blosum62 ... ok
Nov 18 19:40:24.635 INFO [stdout] test alignment::pairwise::tests::test_aligner_new ... ok
Nov 18 19:40:24.635 INFO [stdout] test alignment::pairwise::tests::test_global_affine_ins2 ... ok
Nov 18 19:40:24.635 INFO [stdout] test alignment::pairwise::tests::test_global_affine_ins ... ok
Nov 18 19:40:24.636 INFO [stdout] test alignment::pairwise::tests::test_global_right_del ... ok
Nov 18 19:40:24.643 INFO [stdout] test alignment::pairwise::tests::test_insert_only_semiglobal ... ok
Nov 18 19:40:24.643 INFO [stdout] test alignment::pairwise::tests::test_insert_in_between_semiglobal ... ok
Nov 18 19:40:24.647 INFO [stdout] test alignment::pairwise::tests::test_issue11 ... ok
Nov 18 19:40:24.651 INFO [stdout] test alignment::pairwise::tests::test_issue12_3 ... ok
Nov 18 19:40:24.651 INFO [stdout] test alignment::pairwise::banded::banded::test_substitutions ... ok
Nov 18 19:40:24.651 INFO [stdout] test alignment::pairwise::tests::test_left_aligned_del ... ok
Nov 18 19:40:24.653 INFO [stdout] test alignment::pairwise::tests::test_issue12_2 ... ok
Nov 18 19:40:24.653 INFO [stdout] test alignment::pairwise::tests::test_issue12_1 ... ok
Nov 18 19:40:24.653 INFO [stdout] test alignment::pairwise::tests::test_local ... ok
Nov 18 19:40:24.654 INFO [stdout] test alignment::pairwise::banded::banded::test_same ... ok
Nov 18 19:40:24.654 INFO [stdout] test alignment::pairwise::tests::test_left_aligned_ins ... ok
Nov 18 19:40:24.666 INFO [stdout] test alignment::pairwise::tests::test_local_affine_ins2 ... ok
Nov 18 19:40:24.671 INFO [stdout] test alignment::pairwise::tests::test_longer_string_all_operations ... ok
Nov 18 19:40:24.687 INFO [stdout] test alignment::pairwise::tests::test_semiglobal ... ok
Nov 18 19:40:24.687 INFO [stdout] test alignment::pairwise::tests::test_semiglobal_simple ... ok
Nov 18 19:40:24.687 INFO [stdout] test alignment::pairwise::tests::test_scoring_from_scores ... ok
Nov 18 19:40:24.687 INFO [stdout] test alignment::pairwise::tests::test_semiglobal_gap_open_lt_mismatch ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::banded::banded::test_overhangs5 ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::distance::tests::test_hamming_dist_bad ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::tests::test_xclip_suffix_custom ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::tests::test_yclip_prefix_custom ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::tests::test_yclip_suffix_custom ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::tests::traceback_cell ... ok
Nov 18 19:40:24.695 INFO [stdout] test alignment::pairwise::tests::test_xclip_prefix_custom ... ok
Nov 18 19:40:24.696 INFO [stdout] test alignment::sparse::sparse_alignment::test_find_kmer_matches ... ok
Nov 18 19:40:24.696 INFO [stdout] test alignment::sparse::sparse_alignment::test_lcskpp0 ... ok
Nov 18 19:40:24.696 INFO [stdout] test alignment::sparse::sparse_alignment::test_expanded_matches ... ok
Nov 18 19:40:24.696 INFO [stdout] test alignment::sparse::sparse_alignment::test_lcskpp1 ... ok
Nov 18 19:40:24.696 INFO [stdout] test alignment::sparse::sparse_alignment::test_lcskpp2 ... ok
Nov 18 19:40:24.697 INFO [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_same ... ok
Nov 18 19:40:24.711 INFO [stdout] test alignment::sparse::sparse_alignment::test_sdp ... ok
Nov 18 19:40:24.711 INFO [stdout] test alignment::sparse::sparse_alignment::test_sdp1 ... ok
Nov 18 19:40:24.711 INFO [stdout] test alignment::sparse::sparse_alignment::test_sdp2 ... ok
Nov 18 19:40:24.711 INFO [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_same ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::rna::tests::is_no_word ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::protein::tests::symbol_is_no_word ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::protein::tests::number_is_no_word ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::protein::tests::is_word ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::rna::tests::symbol_is_no_word ... ok
Nov 18 19:40:24.711 INFO [stdout] test alphabets::rna::tests::test_reverse_complement ... ok
Nov 18 19:40:24.711 INFO [stdout] test data_structures::bit_tree::test_bit_tree::test_bit_tree ... ok
Nov 18 19:40:24.711 INFO [stdout] test data_structures::bitenc::tests::test_bitenc ... ok
Nov 18 19:40:24.719 INFO [stdout] test data_structures::bitenc::tests::test_issue29 ... ok
Nov 18 19:40:24.719 INFO [stdout] test alphabets::protein::tests::is_no_word ... ok
Nov 18 19:40:24.719 INFO [stdout] test data_structures::bitenc::tests::test_push_values ... ok
Nov 18 19:40:24.719 INFO [stdout] test data_structures::bwt::tests::test_bwtfind ... ok
Nov 18 19:40:24.721 INFO [stdout] test data_structures::fmindex::tests::test_fmindex ... ok
Nov 18 19:40:24.723 INFO [stdout] test alphabets::rna::tests::number_is_no_word ... ok
Nov 18 19:40:24.723 INFO [stdout] test data_structures::fmindex::tests::test_init_interval ... ok
Nov 18 19:40:24.723 INFO [stdout] test alphabets::rna::tests::is_word ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::bwt::tests::test_occ ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::bwt::tests::test_invert_bwt ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::fmindex::tests::test_smems ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::interval_tree::tests::from_iterator ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::interval_tree::tests::zero_width_ranges ... ok
Nov 18 19:40:24.743 INFO [stdout] test alignment::sparse::sparse_alignment::test_lcskpp_tandem_repeat ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::qgram_index::tests::test_exact_matches ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::qgram_index::tests::test_matches ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::qgram_index::tests::test_exact_matches_self ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::interval_tree::tests::test_insertion_and_intersection ... ok
Nov 18 19:40:24.743 INFO [stdout] test alignment::sparse::sparse_alignment::test_sdpkpp_tandem_repeat ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::rank_select::tests::test_rank_select ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::qgram_index::tests::test_qgram_matches ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::suffix_array::tests::test_buckets ... ok
Nov 18 19:40:24.743 INFO [stdout] test data_structures::rank_select::tests::test_single_select ... ok
Nov 18 19:40:24.755 INFO [stdout] test data_structures::rank_select::tests::test_select ... ok
Nov 18 19:40:24.755 INFO [stdout] test data_structures::suffix_array::tests::test_issue10_2 ... ok
Nov 18 19:40:24.755 INFO [stdout] test data_structures::suffix_array::tests::test_issue10_1 ... ok
Nov 18 19:40:24.767 INFO [stdout] test data_structures::suffix_array::tests::test_handles_sentinels_properly ... ok
Nov 18 19:40:24.783 INFO [stdout] test data_structures::interval_tree::tests::iter_mut ... ok
Nov 18 19:40:24.783 INFO [stdout] test data_structures::suffix_array::tests::test_pos_types ... ok
Nov 18 19:40:24.783 INFO [stdout] test data_structures::suffix_array::tests::test_lms_pos ... ok
Nov 18 19:40:24.783 INFO [stdout] test data_structures::suffix_array::tests::test_pos ... ok
Nov 18 19:40:24.783 INFO [stdout] test io::fasta::tests::test_indexed_reader ... ok
Nov 18 19:40:24.783 INFO [stdout] test io::fasta::tests::test_index_sequences ... ok
Nov 18 19:40:24.783 INFO [stdout] test io::bed::tests::test_reader ... ok
Nov 18 19:40:24.783 INFO [stdout] test io::bed::tests::test_writer ... ok
Nov 18 19:40:24.791 INFO [stdout] test io::fasta::tests::test_indexed_reader_by_rid_all ... ok
Nov 18 19:40:24.791 INFO [stdout] test io::fasta::tests::test_indexed_reader_crlf_all ... ok
Nov 18 19:40:24.791 INFO [stdout] test io::fasta::tests::test_indexed_reader_crlf_by_rid_all ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_all ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_bad_reader ... ok
Nov 18 19:40:24.823 INFO [stdout] test data_structures::suffix_array::tests::test_sorts_lexically ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_crlf ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_all ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_by_rid_all ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf ... ok
Nov 18 19:40:24.823 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_all ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_crlf_by_rid_all ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_seek_fails ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_size_hint ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_iter_read_fails ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_read_read_fails ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_indexed_reader_no_trailing_lf ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader_no_id ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader_non_ascii_sequence ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader_read_fails ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader_read_fails_iter ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_reader_wrong_header ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_record_with_attrs ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fasta::tests::test_writer ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fastq::tests::test_reader ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fastq::tests::test_record_with_attrs ... ok
Nov 18 19:40:24.831 INFO [stdout] test io::fastq::tests::test_writer ... ok
Nov 18 19:40:24.843 INFO [stdout] test io::fasta::tests::test_indexed_reader_read_seek_fails ... ok
Nov 18 19:40:24.843 INFO [stdout] test io::fasta::tests::test_indexed_reader_reused_buffer ... ok
Nov 18 19:40:24.843 INFO [stdout] test io::gff::tests::test_convert_gtf2_to_gff3 ... ok
Nov 18 19:40:24.843 INFO [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_fails ... ok
Nov 18 19:40:24.843 INFO [stdout] test io::fasta::tests::test_indexed_reader_no_fetch_read_iter_fails ... ok
Nov 18 19:40:24.855 INFO [stdout] test io::gff::tests::test_reader_gtf2 ... ok
Nov 18 19:40:24.863 INFO [stdout] test io::gff::tests::test_reader_gtf2_dup_attr_keys ... ok
Nov 18 19:40:24.863 INFO [stdout] test io::gff::tests::test_writer_gff3 ... ok
Nov 18 19:40:24.875 INFO [stdout] test io::gff::tests::test_reader_gff3 ... ok
Nov 18 19:40:24.875 INFO [stdout] test io::gff::tests::test_reader_gtf2_2 ... ok
Nov 18 19:40:24.875 INFO [stdout] test io::gff::tests::test_writer_gtf2 ... ok
Nov 18 19:40:24.875 INFO [stdout] test pattern_matching::bndm::tests::test_find_all ... ok
Nov 18 19:40:24.875 INFO [stdout] test pattern_matching::bom::tests::test_delta ... ok
Nov 18 19:40:24.895 INFO [stdout] test data_structures::interval_tree::tests::test_insertion_and_intersection_2 ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::horspool::tests::test_find_all ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::kmp::tests::test_delta ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::kmp::tests::test_find_all ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::bom::tests::test_find_all ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::horspool::tests::test_shift ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::kmp::tests::test_lps ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::myers::tests::test_distance ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::myers::tests::test_find_all_end ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::kmp::tests::test_find_all_at_start ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::dnamotif::tests::find_motif ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::dnamotif::tests::simple_pssm ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::myers::tests::test_long ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::dnamotif::tests::test_inconsist_err ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::dnamotif::tests::test_info_content ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::dnamotif::tests::test_mono_err ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::protmotif::tests::test_inconsist_err ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::protmotif::tests::test_info_content ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::protmotif::tests::test_mono_err ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::pssm::protmotif::tests::test_scoring ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::shift_and::tests::test_find_all ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::ukkonen::tests::test_find_all_end ... ok
Nov 18 19:40:24.895 INFO [stdout] test pattern_matching::ukkonen::tests::test_find_start ... ok
Nov 18 19:40:24.895 INFO [stdout] test scores::blosum62::tests::test_blosum62 ... ok
Nov 18 19:40:24.895 INFO [stdout] test scores::pam120::tests::test_pam120 ... ok
Nov 18 19:40:24.895 INFO [stdout] test scores::pam200::tests::test_pam200 ... ok
Nov 18 19:40:24.895 INFO [stdout] test scores::pam250::tests::test_pam250 ... ok
Nov 18 19:40:24.895 INFO [stdout] test scores::pam40::tests::test_pam40 ... ok
Nov 18 19:40:24.895 INFO [stdout] test seq_analysis::orf::tests::test_orf ... ok
Nov 18 19:40:24.895 INFO [stdout] test stats::bayesian::tests::test_expected_fdr ... ok
Nov 18 19:40:24.895 INFO [stdout] test stats::combinatorics::tests::test_comb ... ok
Nov 18 19:40:24.895 INFO [stdout] test stats::combinatorics::tests::test_comb_scaled ... ok
Nov 18 19:40:24.895 INFO [stdout] test stats::hmm::tests::test_discrete_backward_toy_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_discrete_forward_toy_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_gaussian_backward_simple_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_discrete_viterbi_toy_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_gaussian_forward_equals_backward_simple_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_gaussian_forward_simple_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::hmm::tests::test_gaussian_viterbi_simple_example ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::pairhmm::tests::test_insertion ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::pairhmm::tests::test_mismatch ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::pairhmm::tests::test_same ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::probs::tests::test_cap_numerical_overshoot ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::pairhmm::tests::test_deletion ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::probs::cdf::test::test_cdf ... ok
Nov 18 19:40:24.907 INFO [stdout] test stats::probs::tests::test_one_minus ... ok
Nov 18 19:40:24.910 INFO [stdout] test stats::probs::tests::test_cap_numerical_overshoot_panic ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_cumsum ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_empty_sum ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_sub ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_simpsons_integrate ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_sum ... ok
Nov 18 19:40:24.927 INFO [stdout] test stats::probs::tests::test_sum_one_zero ... ok
Nov 18 19:40:24.927 INFO [stdout] test utils::interval::tests::range_interval_conversions ... ok
Nov 18 19:40:24.927 INFO [stdout] test utils::interval::tests::negative_width_range ... ok
Nov 18 19:40:24.927 INFO [stdout] test utils::tests::test_prescan ... ok
Nov 18 19:40:24.927 INFO [stdout] test utils::tests::test_scan ... ok
Nov 18 19:40:24.927 INFO [stdout] test utils::tests::test_strand ... ok
Nov 18 19:40:24.939 INFO [stdout] test stats::probs::tests::test_trapezoidal_integrate ... ok
Nov 18 19:40:24.939 INFO [stdout] test stats::probs::tests::test_zero ... ok
Nov 18 19:40:24.947 INFO [stdout] test utils::text::tests::test_print_sequence ... ok
Nov 18 19:40:25.079 INFO [stdout] test data_structures::fmindex::tests::test_issue39 ... ok
Nov 18 19:40:25.107 INFO [stdout] test stats::hmm::tests::test_discrete_forward_equals_backward_toy_example ... ok
Nov 18 19:40:25.162 INFO [stdout] test alignment::pairwise::banded::banded::test_big ... ok
Nov 18 19:40:25.162 INFO [stdout] 
Nov 18 19:40:25.162 INFO [stdout] test result: ok. 227 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 19:40:25.162 INFO [stdout] 
Nov 18 19:40:25.170 INFO [stderr]    Doc-tests bio
Nov 18 19:40:30.290 INFO [stdout] 
Nov 18 19:40:30.290 INFO [stdout] running 42 tests
Nov 18 19:41:17.468 INFO [stdout] test src/alignment/pairwise/banded.rs - alignment::pairwise::banded (line 20) ... ok
Nov 18 19:41:18.075 INFO [stdout] test src/alignment/distance.rs - alignment::distance::levenshtein (line 48) ... ok
Nov 18 19:41:19.380 INFO [stdout] test src/alignment/distance.rs - alignment::distance::hamming (line 16) ... ok
Nov 18 19:41:19.795 INFO [stdout] test <::custom_derive::custom_derive macros> - stats::probs::LogProb (line 46) ... ok
Nov 18 19:41:20.355 INFO [stdout] test <::custom_derive::custom_derive macros> - stats::probs::Prob (line 46) ... ok
Nov 18 19:41:20.441 INFO [stdout] test <::custom_derive::custom_derive macros> - stats::probs::PHREDProb (line 46) ... ok
Nov 18 19:41:22.447 INFO [stdout] test src/alignment/pairwise/mod.rs - alignment::pairwise (line 13) ... ok
Nov 18 19:41:24.439 INFO [stdout] test src/alignment/sparse.rs - alignment::sparse (line 18) ... ok
Nov 18 19:41:48.375 INFO [stdout] test src/alphabets/protein.rs - alphabets::protein (line 10) ... ok
Nov 18 19:41:55.483 INFO [stdout] test src/data_structures/bitenc.rs - data_structures::bitenc (line 11) ... ok
Nov 18 19:41:58.236 INFO [stdout] test src/data_structures/bwt.rs - data_structures::bwt::bwt (line 42) ... ok
Nov 18 19:41:58.643 INFO [stdout] test src/alphabets/dna.rs - alphabets::dna (line 10) ... ok
Nov 18 19:42:01.731 INFO [stdout] test src/alphabets/mod.rs - alphabets (line 10) ... ok
Nov 18 19:42:04.391 INFO [stdout] test src/data_structures/bit_tree.rs - data_structures::bit_tree (line 12) ... ok
Nov 18 19:42:08.078 INFO [stdout] test src/alphabets/rna.rs - alphabets::rna (line 10) ... ok
Nov 18 19:42:09.047 INFO [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex (line 12) ... ok
Nov 18 19:42:30.911 INFO [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex (line 34) ... ok
Nov 18 19:42:38.400 INFO [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex::FMDIndex<DBWT, DLess, DOcc>::smems (line 266) ... ok
Nov 18 19:42:39.859 INFO [stdout] test src/data_structures/interval_tree.rs - data_structures::interval_tree (line 14) ... ok
Nov 18 19:42:40.915 INFO [stdout] test src/data_structures/fmindex.rs - data_structures::fmindex::FMIndexable::backward_search (line 98) ... ok
Nov 18 19:42:44.609 INFO [stdout] test src/data_structures/qgram_index.rs - data_structures::qgram_index (line 10) ... ok
Nov 18 19:42:45.991 INFO [stdout] test src/data_structures/smallints.rs - data_structures::smallints (line 13) ... ok
Nov 18 19:42:47.823 INFO [stdout] test src/data_structures/rank_select.rs - data_structures::rank_select (line 11) ... ok
Nov 18 19:42:48.379 INFO [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::lcp (line 239) ... ok
Nov 18 19:43:04.774 INFO [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::shortest_unique_substrings (line 304) ... ok
Nov 18 19:43:07.331 INFO [stdout] test src/io/fasta.rs - io::fasta (line 10) ... ok
Nov 18 19:43:08.859 INFO [stdout] test src/io/bed.rs - io::bed (line 10) ... ok
Nov 18 19:43:13.773 INFO [stdout] test src/io/fastq.rs - io::fastq (line 10) ... ok
Nov 18 19:43:14.543 INFO [stdout] test src/data_structures/suffix_array.rs - data_structures::suffix_array::suffix_array (line 198) ... ok
Nov 18 19:43:18.293 INFO [stdout] test src/io/gff.rs - io::gff (line 14) ... ok
Nov 18 19:43:19.739 INFO [stdout] test src/lib.rs -  (line 54) ... ok
Nov 18 19:43:19.804 INFO [stdout] test src/lib.rs -  (line 31) ... ok
Nov 18 19:43:35.503 INFO [stdout] test src/pattern_matching/bndm.rs - pattern_matching::bndm (line 12) ... ok
Nov 18 19:43:39.163 INFO [stdout] test src/pattern_matching/myers.rs - pattern_matching::myers (line 13) ... ok
Nov 18 19:43:40.607 INFO [stdout] test src/pattern_matching/horspool.rs - pattern_matching::horspool (line 32) ... ok
Nov 18 19:43:40.659 INFO [stdout] test src/pattern_matching/kmp.rs - pattern_matching::kmp (line 16) ... ok
Nov 18 19:43:42.231 INFO [stdout] test src/pattern_matching/bom.rs - pattern_matching::bom (line 12) ... ok
Nov 18 19:43:43.883 INFO [stdout] test src/seq_analysis/orf.rs - seq_analysis::orf (line 12) ... ok
Nov 18 19:43:44.735 INFO [stdout] test src/pattern_matching/shift_and.rs - pattern_matching::shift_and (line 12) ... ok
Nov 18 19:43:45.001 INFO [stdout] test src/pattern_matching/ukkonen.rs - pattern_matching::ukkonen (line 17) ... ok
Nov 18 19:43:50.547 INFO [stdout] test src/stats/hmm.rs - stats::hmm (line 15) ... ok
Nov 18 19:43:51.785 INFO [stdout] test src/stats/hmm.rs - stats::hmm (line 37) ... ok
Nov 18 19:43:51.785 INFO [stdout] 
Nov 18 19:43:51.786 INFO [stdout] test result: ok. 42 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 19:43:51.786 INFO [stdout] 
Nov 18 19:43:51.851 INFO [stderr] su: No module specific data is present
Nov 18 19:43:52.433 INFO running `"docker" "inspect" "68385fdaea05644809d2d7c1b8d19c44cbee934eed3739ac1e4e35da1ff1fa9d"`
Nov 18 19:43:52.703 INFO running `"docker" "rm" "-f" "68385fdaea05644809d2d7c1b8d19c44cbee934eed3739ac1e4e35da1ff1fa9d"`
Nov 18 19:43:52.993 INFO [stdout] 68385fdaea05644809d2d7c1b8d19c44cbee934eed3739ac1e4e35da1ff1fa9d