Nov 18 09:48:03.778 INFO testing heme-0.3.1 against master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c for pr-55982
Nov 18 09:48:03.778 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-3/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/pr-55982/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6b9b97bd9b704f85f0184f7a213cc4d62bd9654c-alt build --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:03.929 INFO [stdout] b77757dc7b10b7fe07b9986bf81bc8c07152f528005f685a6a17558100ec8b4f
Nov 18 09:48:03.933 INFO running `"docker" "start" "-a" "b77757dc7b10b7fe07b9986bf81bc8c07152f528005f685a6a17558100ec8b4f"`
Nov 18 09:48:04.295 INFO [stderr] usermod: no changes
Nov 18 09:48:04.319 INFO [stderr]    Compiling heme v0.3.1 (/source)
Nov 18 09:48:04.697 INFO [stderr] warning: unused import: `std::collections::HashMap`
Nov 18 09:48:04.697 INFO [stderr]  --> src/sampling.rs:1:5
Nov 18 09:48:04.697 INFO [stderr]   |
Nov 18 09:48:04.697 INFO [stderr] 1 | use std::collections::HashMap; 
Nov 18 09:48:04.697 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.697 INFO [stderr]   |
Nov 18 09:48:04.697 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Nov 18 09:48:04.697 INFO [stderr] 
Nov 18 09:48:04.762 INFO [stderr] warning: unused variable: `protocol_name`
Nov 18 09:48:04.762 INFO [stderr]   --> src/sampling.rs:20:21
Nov 18 09:48:04.762 INFO [stderr]    |
Nov 18 09:48:04.762 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 18 09:48:04.762 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 18 09:48:04.762 INFO [stderr]    |
Nov 18 09:48:04.762 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Nov 18 09:48:04.762 INFO [stderr] 
Nov 18 09:48:04.762 INFO [stderr] warning: unused variable: `a1`
Nov 18 09:48:04.762 INFO [stderr]   --> src/scoring.rs:24:39
Nov 18 09:48:04.762 INFO [stderr]    |
Nov 18 09:48:04.762 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:04.762 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Nov 18 09:48:04.763 INFO [stderr] 
Nov 18 09:48:04.763 INFO [stderr] warning: unused variable: `a2`
Nov 18 09:48:04.763 INFO [stderr]   --> src/scoring.rs:24:50
Nov 18 09:48:04.763 INFO [stderr]    |
Nov 18 09:48:04.763 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:04.763 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Nov 18 09:48:04.763 INFO [stderr] 
Nov 18 09:48:04.783 INFO [stderr] warning: field is never used: `atoms`
Nov 18 09:48:04.783 INFO [stderr]   --> src/conformation.rs:52:5
Nov 18 09:48:04.783 INFO [stderr]    |
Nov 18 09:48:04.783 INFO [stderr] 52 |     atoms: Vec<Atom>,
Nov 18 09:48:04.783 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Nov 18 09:48:04.783 INFO [stderr]    |
Nov 18 09:48:04.783 INFO [stderr]    = note: #[warn(dead_code)] on by default
Nov 18 09:48:04.783 INFO [stderr] 
Nov 18 09:48:04.783 INFO [stderr] warning: field is never used: `residue_name`
Nov 18 09:48:04.783 INFO [stderr]   --> src/conformation.rs:53:5
Nov 18 09:48:04.783 INFO [stderr]    |
Nov 18 09:48:04.783 INFO [stderr] 53 |     residue_name: String,
Nov 18 09:48:04.783 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.783 INFO [stderr] 
Nov 18 09:48:04.783 INFO [stderr] warning: field is never used: `residue_index`
Nov 18 09:48:04.783 INFO [stderr]   --> src/conformation.rs:54:5
Nov 18 09:48:04.783 INFO [stderr]    |
Nov 18 09:48:04.783 INFO [stderr] 54 |     residue_index: i32,
Nov 18 09:48:04.783 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Nov 18 09:48:04.784 INFO [stderr] 
Nov 18 09:48:06.289 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.98s
Nov 18 09:48:06.296 INFO [stderr] su: No module specific data is present
Nov 18 09:48:07.167 INFO running `"docker" "inspect" "b77757dc7b10b7fe07b9986bf81bc8c07152f528005f685a6a17558100ec8b4f"`
Nov 18 09:48:07.475 INFO running `"docker" "rm" "-f" "b77757dc7b10b7fe07b9986bf81bc8c07152f528005f685a6a17558100ec8b4f"`
Nov 18 09:48:07.865 INFO [stdout] b77757dc7b10b7fe07b9986bf81bc8c07152f528005f685a6a17558100ec8b4f
Nov 18 09:48:07.865 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-3/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/pr-55982/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6b9b97bd9b704f85f0184f7a213cc4d62bd9654c-alt test --frozen --no-run" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:08.291 INFO [stdout] ff1df6d32005f72dcc9f85d38baec0783ab976ffd12230c0284ac8a35e697002
Nov 18 09:48:08.293 INFO running `"docker" "start" "-a" "ff1df6d32005f72dcc9f85d38baec0783ab976ffd12230c0284ac8a35e697002"`
Nov 18 09:48:09.557 INFO [stderr] usermod: no changes
Nov 18 09:48:09.610 INFO [stderr]    Compiling heme v0.3.1 (/source)
Nov 18 09:48:10.192 INFO [stderr] warning: unused import: `std::collections::HashMap`
Nov 18 09:48:10.192 INFO [stderr]  --> src/sampling.rs:1:5
Nov 18 09:48:10.192 INFO [stderr]   |
Nov 18 09:48:10.192 INFO [stderr] 1 | use std::collections::HashMap; 
Nov 18 09:48:10.192 INFO [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.192 INFO [stderr]   |
Nov 18 09:48:10.192 INFO [stderr]   = note: #[warn(unused_imports)] on by default
Nov 18 09:48:10.192 INFO [stderr] 
Nov 18 09:48:10.268 INFO [stderr] warning: unused variable: `protocol_name`
Nov 18 09:48:10.268 INFO [stderr]   --> src/sampling.rs:20:21
Nov 18 09:48:10.268 INFO [stderr]    |
Nov 18 09:48:10.268 INFO [stderr] 20 | pub fn get_protocol(protocol_name: &str) -> Protocol {
Nov 18 09:48:10.268 INFO [stderr]    |                     ^^^^^^^^^^^^^ help: consider using `_protocol_name` instead
Nov 18 09:48:10.268 INFO [stderr]    |
Nov 18 09:48:10.268 INFO [stderr]    = note: #[warn(unused_variables)] on by default
Nov 18 09:48:10.269 INFO [stderr] 
Nov 18 09:48:10.269 INFO [stderr] warning: unused variable: `a1`
Nov 18 09:48:10.269 INFO [stderr]   --> src/scoring.rs:24:39
Nov 18 09:48:10.269 INFO [stderr]    |
Nov 18 09:48:10.269 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:10.269 INFO [stderr]    |                                       ^^ help: consider using `_a1` instead
Nov 18 09:48:10.269 INFO [stderr] 
Nov 18 09:48:10.269 INFO [stderr] warning: unused variable: `a2`
Nov 18 09:48:10.269 INFO [stderr]   --> src/scoring.rs:24:50
Nov 18 09:48:10.269 INFO [stderr]    |
Nov 18 09:48:10.269 INFO [stderr] 24 | pub fn calculate_lennard_jones_energy(a1: &Atom, a2: &Atom, r: f64) -> f64 {
Nov 18 09:48:10.269 INFO [stderr]    |                                                  ^^ help: consider using `_a2` instead
Nov 18 09:48:10.269 INFO [stderr] 
Nov 18 09:48:10.294 INFO [stderr] warning: field is never used: `atoms`
Nov 18 09:48:10.294 INFO [stderr]   --> src/conformation.rs:52:5
Nov 18 09:48:10.294 INFO [stderr]    |
Nov 18 09:48:10.294 INFO [stderr] 52 |     atoms: Vec<Atom>,
Nov 18 09:48:10.294 INFO [stderr]    |     ^^^^^^^^^^^^^^^^
Nov 18 09:48:10.297 INFO [stderr]    |
Nov 18 09:48:10.297 INFO [stderr]    = note: #[warn(dead_code)] on by default
Nov 18 09:48:10.297 INFO [stderr] 
Nov 18 09:48:10.298 INFO [stderr] warning: field is never used: `residue_name`
Nov 18 09:48:10.298 INFO [stderr]   --> src/conformation.rs:53:5
Nov 18 09:48:10.298 INFO [stderr]    |
Nov 18 09:48:10.298 INFO [stderr] 53 |     residue_name: String,
Nov 18 09:48:10.298 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.298 INFO [stderr] 
Nov 18 09:48:10.298 INFO [stderr] warning: field is never used: `residue_index`
Nov 18 09:48:10.298 INFO [stderr]   --> src/conformation.rs:54:5
Nov 18 09:48:10.298 INFO [stderr]    |
Nov 18 09:48:10.298 INFO [stderr] 54 |     residue_index: i32,
Nov 18 09:48:10.298 INFO [stderr]    |     ^^^^^^^^^^^^^^^^^^
Nov 18 09:48:10.298 INFO [stderr] 
Nov 18 09:48:10.311 INFO [stderr] warning: function `H` should have a snake case name such as `h`
Nov 18 09:48:10.311 INFO [stderr]    --> src/io.rs:152:9
Nov 18 09:48:10.311 INFO [stderr]     |
Nov 18 09:48:10.311 INFO [stderr] 152 | /         fn H(l: &f64) -> f64 {
Nov 18 09:48:10.311 INFO [stderr] 153 | |
Nov 18 09:48:10.311 INFO [stderr] 154 | |             // bounds of N choose lN
Nov 18 09:48:10.311 INFO [stderr] 155 | |             // can be found by 2^(n*H(l))
Nov 18 09:48:10.311 INFO [stderr] ...   |
Nov 18 09:48:10.311 INFO [stderr] 161 | |             l.ln() - value * value.ln()
Nov 18 09:48:10.311 INFO [stderr] 162 | |         }
Nov 18 09:48:10.311 INFO [stderr]     | |_________^
Nov 18 09:48:10.311 INFO [stderr]     |
Nov 18 09:48:10.311 INFO [stderr]     = note: #[warn(non_snake_case)] on by default
Nov 18 09:48:10.311 INFO [stderr] 
Nov 18 09:48:10.837 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1.26s
Nov 18 09:48:10.848 INFO [stderr] su: No module specific data is present
Nov 18 09:48:11.307 INFO running `"docker" "inspect" "ff1df6d32005f72dcc9f85d38baec0783ab976ffd12230c0284ac8a35e697002"`
Nov 18 09:48:11.365 INFO running `"docker" "rm" "-f" "ff1df6d32005f72dcc9f85d38baec0783ab976ffd12230c0284ac8a35e697002"`
Nov 18 09:48:11.525 INFO [stdout] ff1df6d32005f72dcc9f85d38baec0783ab976ffd12230c0284ac8a35e697002
Nov 18 09:48:11.528 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55982/worker-3/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-3/pr-55982/master#6b9b97bd9b704f85f0184f7a213cc4d62bd9654c:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +6b9b97bd9b704f85f0184f7a213cc4d62bd9654c-alt test --frozen" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 18 09:48:11.743 INFO [stdout] e50ed647be83f3f910442fd79c288a6849052e51c6778392b62e0aa78a8cfc7c
Nov 18 09:48:11.745 INFO running `"docker" "start" "-a" "e50ed647be83f3f910442fd79c288a6849052e51c6778392b62e0aa78a8cfc7c"`
Nov 18 09:48:12.120 INFO [stderr] usermod: no changes
Nov 18 09:48:12.146 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 0.01s
Nov 18 09:48:12.146 INFO [stderr]      Running /target/debug/deps/heme-66f38d5bca8d5152
Nov 18 09:48:12.148 INFO [stdout] 
Nov 18 09:48:12.148 INFO [stdout] running 4 tests
Nov 18 09:48:12.149 INFO [stdout] test io::tests::test_new_atoms_testy ... ok
Nov 18 09:48:12.149 INFO [stdout] test io::tests::test_lennard_jones_atom_loading ... ok
Nov 18 09:48:12.149 INFO [stdout] test io::tests::test_pdb_parsing ... ok
Nov 18 09:48:12.149 INFO [stdout] test io::tests::test_entropy_function ... ok
Nov 18 09:48:12.149 INFO [stdout] 
Nov 18 09:48:12.149 INFO [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:12.149 INFO [stdout] 
Nov 18 09:48:12.150 INFO [stderr]      Running /target/debug/deps/heme-7ce510029eb53672
Nov 18 09:48:12.150 INFO [stdout] 
Nov 18 09:48:12.150 INFO [stdout] running 0 tests
Nov 18 09:48:12.150 INFO [stdout] 
Nov 18 09:48:12.150 INFO [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:12.150 INFO [stdout] 
Nov 18 09:48:12.151 INFO [stderr]    Doc-tests heme
Nov 18 09:48:12.849 INFO [stdout] 
Nov 18 09:48:12.849 INFO [stdout] running 1 test
Nov 18 09:48:13.381 INFO [stdout] test src/conformation.rs - conformation::XYZ (line 18) ... ok
Nov 18 09:48:13.381 INFO [stdout] 
Nov 18 09:48:13.381 INFO [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
Nov 18 09:48:13.381 INFO [stdout] 
Nov 18 09:48:13.389 INFO [stderr] su: No module specific data is present
Nov 18 09:48:13.785 INFO running `"docker" "inspect" "e50ed647be83f3f910442fd79c288a6849052e51c6778392b62e0aa78a8cfc7c"`
Nov 18 09:48:13.906 INFO running `"docker" "rm" "-f" "e50ed647be83f3f910442fd79c288a6849052e51c6778392b62e0aa78a8cfc7c"`
Nov 18 09:48:14.107 INFO [stdout] e50ed647be83f3f910442fd79c288a6849052e51c6778392b62e0aa78a8cfc7c