Nov 07 02:28:34.363 INFO checking TuBieJun/consensus against master#24e66c28980442a48d9458f1a4f9b76cc722dc8a+rustflags=-Dduplicate_associated_type_bindings for pr-55687 Nov 07 02:28:34.372 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55687/worker-4/master#24e66c28980442a48d9458f1a4f9b76cc722dc8a+rustflags=-Dduplicate_associated_type_bindings:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-4/pr-55687/master#24e66c28980442a48d9458f1a4f9b76cc722dc8a+rustflags=-Dduplicate_associated_type_bindings:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +24e66c28980442a48d9458f1a4f9b76cc722dc8a-alt check --frozen --all --all-targets" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dduplicate_associated_type_bindings" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Nov 07 02:28:34.824 INFO blam! 28f10d62d1c5bf8ef426f717114048128e9e471ffb5c27468e86987ec1d704e5 Nov 07 02:28:34.836 INFO running `"docker" "start" "-a" "28f10d62d1c5bf8ef426f717114048128e9e471ffb5c27468e86987ec1d704e5"` Nov 07 02:28:36.242 INFO kablam! usermod: no changes Nov 07 02:28:36.366 INFO kablam! Checking ieee754 v0.2.2 Nov 07 02:28:36.372 INFO kablam! Compiling fs-utils v1.0.0 Nov 07 02:28:36.372 INFO kablam! Checking itertools v0.6.5 Nov 07 02:28:38.231 INFO kablam! Compiling rust-htslib v0.15.0 Nov 07 02:29:08.259 INFO kablam! Checking consensus v0.1.0 (/source) Nov 07 02:29:10.356 INFO kablam! warning: unused import: `std::env` Nov 07 02:29:10.357 INFO kablam! --> src/main.rs:12:5 Nov 07 02:29:10.358 INFO kablam! | Nov 07 02:29:10.359 INFO kablam! 12 | use std::env; Nov 07 02:29:10.359 INFO kablam! | ^^^^^^^^ Nov 07 02:29:10.360 INFO kablam! | Nov 07 02:29:10.360 INFO kablam! = note: #[warn(unused_imports)] on by default Nov 07 02:29:10.361 INFO kablam! Nov 07 02:29:10.361 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Nov 07 02:29:10.362 INFO kablam! --> src/main.rs:16:5 Nov 07 02:29:10.362 INFO kablam! | Nov 07 02:29:10.363 INFO kablam! 16 | use rust_htslib::prelude::*; Nov 07 02:29:10.364 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.364 INFO kablam! Nov 07 02:29:10.365 INFO kablam! warning: unused import: `std::io` Nov 07 02:29:10.365 INFO kablam! --> src/main.rs:21:5 Nov 07 02:29:10.366 INFO kablam! | Nov 07 02:29:10.367 INFO kablam! 21 | use std::io; Nov 07 02:29:10.367 INFO kablam! | ^^^^^^^ Nov 07 02:29:10.368 INFO kablam! Nov 07 02:29:10.368 INFO kablam! warning: unused import: `PathBuf` Nov 07 02:29:10.369 INFO kablam! --> src/main.rs:25:23 Nov 07 02:29:10.370 INFO kablam! | Nov 07 02:29:10.370 INFO kablam! 25 | use std::path::{Path, PathBuf}; Nov 07 02:29:10.371 INFO kablam! | ^^^^^^^ Nov 07 02:29:10.371 INFO kablam! Nov 07 02:29:10.372 INFO kablam! warning: unused import: `SubCommand` Nov 07 02:29:10.372 INFO kablam! --> src/main.rs:26:22 Nov 07 02:29:10.373 INFO kablam! | Nov 07 02:29:10.373 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Nov 07 02:29:10.373 INFO kablam! | ^^^^^^^^^^ Nov 07 02:29:10.374 INFO kablam! Nov 07 02:29:10.374 INFO kablam! warning: unnecessary parentheses around `if` condition Nov 07 02:29:10.374 INFO kablam! --> src/main.rs:218:20 Nov 07 02:29:10.374 INFO kablam! | Nov 07 02:29:10.374 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Nov 07 02:29:10.374 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Nov 07 02:29:10.374 INFO kablam! | Nov 07 02:29:10.374 INFO kablam! = note: #[warn(unused_parens)] on by default Nov 07 02:29:10.380 INFO kablam! Nov 07 02:29:10.380 INFO kablam! warning: unnecessary parentheses around `if` condition Nov 07 02:29:10.380 INFO kablam! --> src/main.rs:239:16 Nov 07 02:29:10.380 INFO kablam! | Nov 07 02:29:10.380 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Nov 07 02:29:10.380 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Nov 07 02:29:10.380 INFO kablam! Nov 07 02:29:10.496 INFO kablam! warning: unused import: `std::io::prelude` Nov 07 02:29:10.497 INFO kablam! --> src/main.rs:22:5 Nov 07 02:29:10.497 INFO kablam! | Nov 07 02:29:10.498 INFO kablam! 22 | use std::io::prelude::*; Nov 07 02:29:10.499 INFO kablam! | ^^^^^^^^^^^^^^^^ Nov 07 02:29:10.499 INFO kablam! Nov 07 02:29:10.528 INFO kablam! warning: unused variable: `consensus_base` Nov 07 02:29:10.529 INFO kablam! --> src/main.rs:139:9 Nov 07 02:29:10.530 INFO kablam! | Nov 07 02:29:10.530 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Nov 07 02:29:10.531 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Nov 07 02:29:10.532 INFO kablam! | Nov 07 02:29:10.532 INFO kablam! = note: #[warn(unused_variables)] on by default Nov 07 02:29:10.533 INFO kablam! Nov 07 02:29:10.534 INFO kablam! warning: unused variable: `consensus_source_reads` Nov 07 02:29:10.534 INFO kablam! --> src/main.rs:144:13 Nov 07 02:29:10.535 INFO kablam! | Nov 07 02:29:10.535 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Nov 07 02:29:10.536 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Nov 07 02:29:10.536 INFO kablam! Nov 07 02:29:10.537 INFO kablam! warning: unused variable: `chrom` Nov 07 02:29:10.538 INFO kablam! --> src/main.rs:283:121 Nov 07 02:29:10.539 INFO kablam! | Nov 07 02:29:10.539 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Nov 07 02:29:10.540 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Nov 07 02:29:10.540 INFO kablam! Nov 07 02:29:10.541 INFO kablam! warning: value assigned to `new_seq_b` is never read Nov 07 02:29:10.542 INFO kablam! --> src/main.rs:370:21 Nov 07 02:29:10.542 INFO kablam! | Nov 07 02:29:10.543 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Nov 07 02:29:10.544 INFO kablam! | ^^^^^^^^^ Nov 07 02:29:10.544 INFO kablam! | Nov 07 02:29:10.545 INFO kablam! = note: #[warn(unused_assignments)] on by default Nov 07 02:29:10.545 INFO kablam! Nov 07 02:29:10.564 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.565 INFO kablam! --> src/main.rs:74:9 Nov 07 02:29:10.566 INFO kablam! | Nov 07 02:29:10.566 INFO kablam! 74 | let mut pair; Nov 07 02:29:10.567 INFO kablam! | ----^^^^ Nov 07 02:29:10.567 INFO kablam! | | Nov 07 02:29:10.568 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.568 INFO kablam! | Nov 07 02:29:10.569 INFO kablam! = note: #[warn(unused_mut)] on by default Nov 07 02:29:10.570 INFO kablam! Nov 07 02:29:10.570 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.571 INFO kablam! --> src/main.rs:75:9 Nov 07 02:29:10.571 INFO kablam! | Nov 07 02:29:10.572 INFO kablam! 75 | let mut strand; Nov 07 02:29:10.573 INFO kablam! | ----^^^^^^ Nov 07 02:29:10.573 INFO kablam! | | Nov 07 02:29:10.574 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.574 INFO kablam! Nov 07 02:29:10.575 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.575 INFO kablam! --> src/main.rs:76:9 Nov 07 02:29:10.576 INFO kablam! | Nov 07 02:29:10.577 INFO kablam! 76 | let mut aln_pos; Nov 07 02:29:10.577 INFO kablam! | ----^^^^^^^ Nov 07 02:29:10.578 INFO kablam! | | Nov 07 02:29:10.578 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.579 INFO kablam! Nov 07 02:29:10.636 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.637 INFO kablam! --> src/main.rs:144:9 Nov 07 02:29:10.638 INFO kablam! | Nov 07 02:29:10.639 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Nov 07 02:29:10.639 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.640 INFO kablam! | | Nov 07 02:29:10.641 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.641 INFO kablam! Nov 07 02:29:10.642 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.642 INFO kablam! --> src/main.rs:151:9 Nov 07 02:29:10.643 INFO kablam! | Nov 07 02:29:10.643 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Nov 07 02:29:10.644 INFO kablam! | ----^^^^^^^^^ Nov 07 02:29:10.645 INFO kablam! | | Nov 07 02:29:10.645 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.646 INFO kablam! Nov 07 02:29:10.668 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.669 INFO kablam! --> src/main.rs:338:9 Nov 07 02:29:10.670 INFO kablam! | Nov 07 02:29:10.670 INFO kablam! 338 | let mut need_trim:bool; Nov 07 02:29:10.671 INFO kablam! | ----^^^^^^^^^ Nov 07 02:29:10.671 INFO kablam! | | Nov 07 02:29:10.672 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.672 INFO kablam! Nov 07 02:29:10.673 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:10.674 INFO kablam! --> src/main.rs:355:9 Nov 07 02:29:10.674 INFO kablam! | Nov 07 02:29:10.675 INFO kablam! 355 | let mut chrom = 0; Nov 07 02:29:10.675 INFO kablam! | ----^^^^^ Nov 07 02:29:10.676 INFO kablam! | | Nov 07 02:29:10.676 INFO kablam! | help: remove this `mut` Nov 07 02:29:10.677 INFO kablam! Nov 07 02:29:10.704 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Nov 07 02:29:10.705 INFO kablam! --> src/main.rs:68:1 Nov 07 02:29:10.706 INFO kablam! | Nov 07 02:29:10.707 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Nov 07 02:29:10.707 INFO kablam! 69 | | Nov 07 02:29:10.708 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Nov 07 02:29:10.708 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Nov 07 02:29:10.709 INFO kablam! ... | Nov 07 02:29:10.709 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Nov 07 02:29:10.710 INFO kablam! 98 | | } Nov 07 02:29:10.711 INFO kablam! | |_^ Nov 07 02:29:10.711 INFO kablam! | Nov 07 02:29:10.712 INFO kablam! = note: #[warn(non_snake_case)] on by default Nov 07 02:29:10.713 INFO kablam! Nov 07 02:29:10.713 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Nov 07 02:29:10.714 INFO kablam! --> src/main.rs:147:9 Nov 07 02:29:10.714 INFO kablam! | Nov 07 02:29:10.714 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Nov 07 02:29:10.715 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.716 INFO kablam! Nov 07 02:29:10.716 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Nov 07 02:29:10.717 INFO kablam! --> src/main.rs:148:9 Nov 07 02:29:10.717 INFO kablam! | Nov 07 02:29:10.718 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Nov 07 02:29:10.719 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.719 INFO kablam! Nov 07 02:29:10.720 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.721 INFO kablam! --> src/main.rs:267:9 Nov 07 02:29:10.721 INFO kablam! | Nov 07 02:29:10.722 INFO kablam! 267 | o_buff.write(&member_record.2); Nov 07 02:29:10.722 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.723 INFO kablam! | Nov 07 02:29:10.724 INFO kablam! = note: #[warn(unused_must_use)] on by default Nov 07 02:29:10.724 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.725 INFO kablam! Nov 07 02:29:10.725 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.725 INFO kablam! --> src/main.rs:269:9 Nov 07 02:29:10.725 INFO kablam! | Nov 07 02:29:10.725 INFO kablam! 269 | o_buff.write(&member_record.0); Nov 07 02:29:10.726 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.727 INFO kablam! | Nov 07 02:29:10.727 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.727 INFO kablam! Nov 07 02:29:10.728 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.728 INFO kablam! --> src/main.rs:272:9 Nov 07 02:29:10.728 INFO kablam! | Nov 07 02:29:10.728 INFO kablam! 272 | o_buff.write(&real_qual_temp); Nov 07 02:29:10.729 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.729 INFO kablam! | Nov 07 02:29:10.730 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.730 INFO kablam! Nov 07 02:29:10.731 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.731 INFO kablam! --> src/main.rs:274:5 Nov 07 02:29:10.731 INFO kablam! | Nov 07 02:29:10.731 INFO kablam! 274 | o_buff.write(b"\n"); Nov 07 02:29:10.732 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.732 INFO kablam! | Nov 07 02:29:10.732 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.733 INFO kablam! Nov 07 02:29:10.734 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.734 INFO kablam! --> src/main.rs:277:5 Nov 07 02:29:10.734 INFO kablam! | Nov 07 02:29:10.734 INFO kablam! 277 | o_buff.write(b"\n"); Nov 07 02:29:10.734 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.734 INFO kablam! | Nov 07 02:29:10.734 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.734 INFO kablam! Nov 07 02:29:10.736 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:10.736 INFO kablam! --> src/main.rs:280:5 Nov 07 02:29:10.736 INFO kablam! | Nov 07 02:29:10.736 INFO kablam! 280 | o_buff.write(b"\n"); Nov 07 02:29:10.736 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.736 INFO kablam! | Nov 07 02:29:10.736 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:10.736 INFO kablam! Nov 07 02:29:10.738 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Nov 07 02:29:10.738 INFO kablam! --> src/main.rs:286:10 Nov 07 02:29:10.738 INFO kablam! | Nov 07 02:29:10.738 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Nov 07 02:29:10.738 INFO kablam! | ^^^^^^^^^^^^ Nov 07 02:29:10.738 INFO kablam! Nov 07 02:29:10.744 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Nov 07 02:29:10.744 INFO kablam! --> src/main.rs:357:9 Nov 07 02:29:10.744 INFO kablam! | Nov 07 02:29:10.744 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Nov 07 02:29:10.744 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.744 INFO kablam! Nov 07 02:29:10.746 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Nov 07 02:29:10.746 INFO kablam! --> src/main.rs:387:17 Nov 07 02:29:10.746 INFO kablam! | Nov 07 02:29:10.746 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Nov 07 02:29:10.746 INFO kablam! | ^^^^^^^^^^^^ Nov 07 02:29:10.746 INFO kablam! Nov 07 02:29:10.787 INFO kablam! warning: unused import: `std::env` Nov 07 02:29:10.787 INFO kablam! --> src/main.rs:12:5 Nov 07 02:29:10.787 INFO kablam! | Nov 07 02:29:10.787 INFO kablam! 12 | use std::env; Nov 07 02:29:10.787 INFO kablam! | ^^^^^^^^ Nov 07 02:29:10.787 INFO kablam! | Nov 07 02:29:10.787 INFO kablam! = note: #[warn(unused_imports)] on by default Nov 07 02:29:10.787 INFO kablam! Nov 07 02:29:10.787 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Nov 07 02:29:10.787 INFO kablam! --> src/main.rs:16:5 Nov 07 02:29:10.787 INFO kablam! | Nov 07 02:29:10.787 INFO kablam! 16 | use rust_htslib::prelude::*; Nov 07 02:29:10.787 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:10.787 INFO kablam! Nov 07 02:29:10.788 INFO kablam! warning: unused import: `std::io` Nov 07 02:29:10.788 INFO kablam! --> src/main.rs:21:5 Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! 21 | use std::io; Nov 07 02:29:10.788 INFO kablam! | ^^^^^^^ Nov 07 02:29:10.788 INFO kablam! Nov 07 02:29:10.788 INFO kablam! warning: unused import: `PathBuf` Nov 07 02:29:10.788 INFO kablam! --> src/main.rs:25:23 Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! 25 | use std::path::{Path, PathBuf}; Nov 07 02:29:10.788 INFO kablam! | ^^^^^^^ Nov 07 02:29:10.788 INFO kablam! Nov 07 02:29:10.788 INFO kablam! warning: unused import: `SubCommand` Nov 07 02:29:10.788 INFO kablam! --> src/main.rs:26:22 Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Nov 07 02:29:10.788 INFO kablam! | ^^^^^^^^^^ Nov 07 02:29:10.788 INFO kablam! Nov 07 02:29:10.788 INFO kablam! warning: unnecessary parentheses around `if` condition Nov 07 02:29:10.788 INFO kablam! --> src/main.rs:218:20 Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Nov 07 02:29:10.788 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! = note: #[warn(unused_parens)] on by default Nov 07 02:29:10.788 INFO kablam! Nov 07 02:29:10.788 INFO kablam! warning: unnecessary parentheses around `if` condition Nov 07 02:29:10.788 INFO kablam! --> src/main.rs:239:16 Nov 07 02:29:10.788 INFO kablam! | Nov 07 02:29:10.788 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Nov 07 02:29:10.788 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Nov 07 02:29:10.788 INFO kablam! Nov 07 02:29:11.017 INFO kablam! warning: unused import: `std::io::prelude` Nov 07 02:29:11.017 INFO kablam! --> src/main.rs:22:5 Nov 07 02:29:11.017 INFO kablam! | Nov 07 02:29:11.017 INFO kablam! 22 | use std::io::prelude::*; Nov 07 02:29:11.017 INFO kablam! | ^^^^^^^^^^^^^^^^ Nov 07 02:29:11.017 INFO kablam! Nov 07 02:29:11.037 INFO kablam! warning: unused variable: `consensus_base` Nov 07 02:29:11.037 INFO kablam! --> src/main.rs:139:9 Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Nov 07 02:29:11.037 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! = note: #[warn(unused_variables)] on by default Nov 07 02:29:11.037 INFO kablam! Nov 07 02:29:11.037 INFO kablam! warning: unused variable: `consensus_source_reads` Nov 07 02:29:11.037 INFO kablam! --> src/main.rs:144:13 Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Nov 07 02:29:11.037 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Nov 07 02:29:11.037 INFO kablam! Nov 07 02:29:11.037 INFO kablam! warning: unused variable: `chrom` Nov 07 02:29:11.037 INFO kablam! --> src/main.rs:283:121 Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Nov 07 02:29:11.037 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Nov 07 02:29:11.037 INFO kablam! Nov 07 02:29:11.037 INFO kablam! warning: value assigned to `new_seq_b` is never read Nov 07 02:29:11.037 INFO kablam! --> src/main.rs:370:21 Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Nov 07 02:29:11.037 INFO kablam! | ^^^^^^^^^ Nov 07 02:29:11.037 INFO kablam! | Nov 07 02:29:11.037 INFO kablam! = note: #[warn(unused_assignments)] on by default Nov 07 02:29:11.037 INFO kablam! Nov 07 02:29:11.046 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.046 INFO kablam! --> src/main.rs:74:9 Nov 07 02:29:11.046 INFO kablam! | Nov 07 02:29:11.046 INFO kablam! 74 | let mut pair; Nov 07 02:29:11.046 INFO kablam! | ----^^^^ Nov 07 02:29:11.046 INFO kablam! | | Nov 07 02:29:11.046 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.046 INFO kablam! | Nov 07 02:29:11.046 INFO kablam! = note: #[warn(unused_mut)] on by default Nov 07 02:29:11.046 INFO kablam! Nov 07 02:29:11.046 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.046 INFO kablam! --> src/main.rs:75:9 Nov 07 02:29:11.046 INFO kablam! | Nov 07 02:29:11.046 INFO kablam! 75 | let mut strand; Nov 07 02:29:11.046 INFO kablam! | ----^^^^^^ Nov 07 02:29:11.046 INFO kablam! | | Nov 07 02:29:11.046 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.046 INFO kablam! Nov 07 02:29:11.046 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.046 INFO kablam! --> src/main.rs:76:9 Nov 07 02:29:11.046 INFO kablam! | Nov 07 02:29:11.046 INFO kablam! 76 | let mut aln_pos; Nov 07 02:29:11.046 INFO kablam! | ----^^^^^^^ Nov 07 02:29:11.046 INFO kablam! | | Nov 07 02:29:11.046 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.046 INFO kablam! Nov 07 02:29:11.078 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.078 INFO kablam! --> src/main.rs:144:9 Nov 07 02:29:11.078 INFO kablam! | Nov 07 02:29:11.078 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Nov 07 02:29:11.078 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.078 INFO kablam! | | Nov 07 02:29:11.078 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.078 INFO kablam! Nov 07 02:29:11.078 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.078 INFO kablam! --> src/main.rs:151:9 Nov 07 02:29:11.078 INFO kablam! | Nov 07 02:29:11.078 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Nov 07 02:29:11.078 INFO kablam! | ----^^^^^^^^^ Nov 07 02:29:11.078 INFO kablam! | | Nov 07 02:29:11.079 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.079 INFO kablam! Nov 07 02:29:11.093 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.093 INFO kablam! --> src/main.rs:338:9 Nov 07 02:29:11.093 INFO kablam! | Nov 07 02:29:11.093 INFO kablam! 338 | let mut need_trim:bool; Nov 07 02:29:11.093 INFO kablam! | ----^^^^^^^^^ Nov 07 02:29:11.093 INFO kablam! | | Nov 07 02:29:11.093 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.093 INFO kablam! Nov 07 02:29:11.093 INFO kablam! warning: variable does not need to be mutable Nov 07 02:29:11.093 INFO kablam! --> src/main.rs:355:9 Nov 07 02:29:11.093 INFO kablam! | Nov 07 02:29:11.093 INFO kablam! 355 | let mut chrom = 0; Nov 07 02:29:11.093 INFO kablam! | ----^^^^^ Nov 07 02:29:11.093 INFO kablam! | | Nov 07 02:29:11.093 INFO kablam! | help: remove this `mut` Nov 07 02:29:11.093 INFO kablam! Nov 07 02:29:11.105 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Nov 07 02:29:11.105 INFO kablam! --> src/main.rs:68:1 Nov 07 02:29:11.105 INFO kablam! | Nov 07 02:29:11.105 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Nov 07 02:29:11.105 INFO kablam! 69 | | Nov 07 02:29:11.105 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Nov 07 02:29:11.105 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Nov 07 02:29:11.105 INFO kablam! ... | Nov 07 02:29:11.105 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Nov 07 02:29:11.105 INFO kablam! 98 | | } Nov 07 02:29:11.106 INFO kablam! | |_^ Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! = note: #[warn(non_snake_case)] on by default Nov 07 02:29:11.106 INFO kablam! Nov 07 02:29:11.106 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Nov 07 02:29:11.106 INFO kablam! --> src/main.rs:147:9 Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Nov 07 02:29:11.106 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.106 INFO kablam! Nov 07 02:29:11.106 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Nov 07 02:29:11.106 INFO kablam! --> src/main.rs:148:9 Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Nov 07 02:29:11.106 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.106 INFO kablam! Nov 07 02:29:11.106 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.106 INFO kablam! --> src/main.rs:267:9 Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! 267 | o_buff.write(&member_record.2); Nov 07 02:29:11.106 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! = note: #[warn(unused_must_use)] on by default Nov 07 02:29:11.106 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.106 INFO kablam! Nov 07 02:29:11.106 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.106 INFO kablam! --> src/main.rs:269:9 Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! 269 | o_buff.write(&member_record.0); Nov 07 02:29:11.106 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.106 INFO kablam! | Nov 07 02:29:11.106 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.106 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:272:9 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 272 | o_buff.write(&real_qual_temp); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:274:5 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 274 | o_buff.write(b"\n"); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:277:5 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 277 | o_buff.write(b"\n"); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: unused `std::result::Result` that must be used Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:280:5 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 280 | o_buff.write(b"\n"); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:286:10 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:357:9 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.107 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Nov 07 02:29:11.107 INFO kablam! --> src/main.rs:387:17 Nov 07 02:29:11.107 INFO kablam! | Nov 07 02:29:11.107 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Nov 07 02:29:11.107 INFO kablam! | ^^^^^^^^^^^^ Nov 07 02:29:11.107 INFO kablam! Nov 07 02:29:11.123 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 34.86s Nov 07 02:29:11.141 INFO kablam! su: No module specific data is present Nov 07 02:29:12.294 INFO running `"docker" "rm" "-f" "28f10d62d1c5bf8ef426f717114048128e9e471ffb5c27468e86987ec1d704e5"` Nov 07 02:29:12.688 INFO blam! 28f10d62d1c5bf8ef426f717114048128e9e471ffb5c27468e86987ec1d704e5