Nov 09 17:51:01.828 INFO checking StephanHeijl/global-supertrees against master#653da4fd006c97625247acd7e076d0782cdc149b for pr-55632
Nov 09 17:51:01.829 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55632/worker-2/master#653da4fd006c97625247acd7e076d0782cdc149b:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-2/pr-55632/master#653da4fd006c97625247acd7e076d0782cdc149b:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +653da4fd006c97625247acd7e076d0782cdc149b-alt check --frozen --all --all-targets" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 09 17:51:02.101 INFO blam! 9ee875293c3d791bb483d20bc84b33fe98cdadc99c5048092a5a8260bf9ab8a5
Nov 09 17:51:02.103 INFO running `"docker" "start" "-a" "9ee875293c3d791bb483d20bc84b33fe98cdadc99c5048092a5a8260bf9ab8a5"`
Nov 09 17:51:03.259 INFO kablam! usermod: no changes
Nov 09 17:51:03.423 INFO kablam!     Checking num-complex v0.1.43
Nov 09 17:51:03.423 INFO kablam!     Checking crossbeam-epoch v0.3.1
Nov 09 17:51:04.191 INFO kablam!     Checking crossbeam-deque v0.2.0
Nov 09 17:51:04.927 INFO kablam!     Checking ndarray v0.11.2
Nov 09 17:51:05.071 INFO kablam!     Checking rayon-core v1.4.1
Nov 09 17:51:07.064 INFO kablam!     Checking rayon v1.0.2
Nov 09 17:51:15.503 INFO kablam!     Checking newick v0.1.0 (/source)
Nov 09 17:51:16.759 INFO kablam! warning: unused import: `std::process`
Nov 09 17:51:16.759 INFO kablam!  --> src/tree.rs:5:5
Nov 09 17:51:16.759 INFO kablam!   |
Nov 09 17:51:16.759 INFO kablam! 5 | use std::process;
Nov 09 17:51:16.759 INFO kablam!   |     ^^^^^^^^^^^^
Nov 09 17:51:16.759 INFO kablam!   |
Nov 09 17:51:16.759 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 09 17:51:16.759 INFO kablam! 
Nov 09 17:51:16.759 INFO kablam! warning: unnecessary parentheses around function argument
Nov 09 17:51:16.759 INFO kablam!    --> src/tree_distance_matrix.rs:312:17
Nov 09 17:51:16.759 INFO kablam!     |
Nov 09 17:51:16.759 INFO kablam! 312 |                 (s * max_size as usize),
Nov 09 17:51:16.759 INFO kablam!     |                 ^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
Nov 09 17:51:16.759 INFO kablam!     |
Nov 09 17:51:16.759 INFO kablam!     = note: #[warn(unused_parens)] on by default
Nov 09 17:51:16.759 INFO kablam! 
Nov 09 17:51:16.759 INFO kablam! warning: unnecessary parentheses around function argument
Nov 09 17:51:16.759 INFO kablam!    --> src/tree_distance_matrix.rs:313:17
Nov 09 17:51:16.759 INFO kablam!     |
Nov 09 17:51:16.759 INFO kablam! 313 |                 ((s+1) * max_size as usize)
Nov 09 17:51:16.759 INFO kablam!     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
Nov 09 17:51:16.759 INFO kablam! 
Nov 09 17:51:16.843 INFO kablam! warning: unused import: `std::process`
Nov 09 17:51:16.844 INFO kablam!  --> src/tree.rs:5:5
Nov 09 17:51:16.844 INFO kablam!   |
Nov 09 17:51:16.844 INFO kablam! 5 | use std::process;
Nov 09 17:51:16.845 INFO kablam!   |     ^^^^^^^^^^^^
Nov 09 17:51:16.845 INFO kablam!   |
Nov 09 17:51:16.845 INFO kablam!   = note: #[warn(unused_imports)] on by default
Nov 09 17:51:16.846 INFO kablam! 
Nov 09 17:51:16.846 INFO kablam! warning: unnecessary parentheses around function argument
Nov 09 17:51:16.846 INFO kablam!    --> src/tree_distance_matrix.rs:312:17
Nov 09 17:51:16.847 INFO kablam!     |
Nov 09 17:51:16.847 INFO kablam! 312 |                 (s * max_size as usize),
Nov 09 17:51:16.847 INFO kablam!     |                 ^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
Nov 09 17:51:16.847 INFO kablam!     |
Nov 09 17:51:16.848 INFO kablam!     = note: #[warn(unused_parens)] on by default
Nov 09 17:51:16.848 INFO kablam! 
Nov 09 17:51:16.848 INFO kablam! warning: unnecessary parentheses around function argument
Nov 09 17:51:16.849 INFO kablam!    --> src/tree_distance_matrix.rs:313:17
Nov 09 17:51:16.849 INFO kablam!     |
Nov 09 17:51:16.849 INFO kablam! 313 |                 ((s+1) * max_size as usize)
Nov 09 17:51:16.850 INFO kablam!     |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
Nov 09 17:51:16.850 INFO kablam! 
Nov 09 17:51:16.987 INFO kablam! warning: unused variable: `children`
Nov 09 17:51:16.987 INFO kablam!   --> src/main.rs:34:9
Nov 09 17:51:16.988 INFO kablam!    |
Nov 09 17:51:16.988 INFO kablam! 34 |     let children = parsed_tree.traverse_children();
Nov 09 17:51:16.988 INFO kablam!    |         ^^^^^^^^ help: consider using `_children` instead
Nov 09 17:51:16.989 INFO kablam!    |
Nov 09 17:51:16.989 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 09 17:51:16.989 INFO kablam! 
Nov 09 17:51:16.989 INFO kablam! warning: value assigned to `read_mode` is never read
Nov 09 17:51:16.990 INFO kablam!    --> src/tree.rs:148:21
Nov 09 17:51:16.990 INFO kablam!     |
Nov 09 17:51:16.990 INFO kablam! 148 |                     read_mode = "LEAF";
Nov 09 17:51:16.991 INFO kablam!     |                     ^^^^^^^^^
Nov 09 17:51:16.991 INFO kablam!     |
Nov 09 17:51:16.991 INFO kablam!     = note: #[warn(unused_assignments)] on by default
Nov 09 17:51:16.991 INFO kablam! 
Nov 09 17:51:16.992 INFO kablam! warning: unused variable: `new_pair_dest`
Nov 09 17:51:16.992 INFO kablam!    --> src/tree_distance_matrix.rs:138:17
Nov 09 17:51:16.992 INFO kablam!     |
Nov 09 17:51:16.993 INFO kablam! 138 |             let new_pair_dest =
Nov 09 17:51:16.993 INFO kablam!     |                 ^^^^^^^^^^^^^ help: consider using `_new_pair_dest` instead
Nov 09 17:51:16.993 INFO kablam! 
Nov 09 17:51:17.100 INFO kablam! warning: variable does not need to be mutable
Nov 09 17:51:17.101 INFO kablam!    --> src/tree_distance_matrix.rs:319:13
Nov 09 17:51:17.101 INFO kablam!     |
Nov 09 17:51:17.101 INFO kablam! 319 |         let mut distance_matrix : Array2<f64 >= Array2::zeros((2, 2));
Nov 09 17:51:17.101 INFO kablam!     |             ----^^^^^^^^^^^^^^^
Nov 09 17:51:17.101 INFO kablam!     |             |
Nov 09 17:51:17.101 INFO kablam!     |             help: remove this `mut`
Nov 09 17:51:17.101 INFO kablam!     |
Nov 09 17:51:17.101 INFO kablam!     = note: #[warn(unused_mut)] on by default
Nov 09 17:51:17.101 INFO kablam! 
Nov 09 17:51:17.101 INFO kablam! warning: method is never used: `calculate_q_matrix`
Nov 09 17:51:17.101 INFO kablam!   --> src/tree_distance_matrix.rs:14:5
Nov 09 17:51:17.101 INFO kablam!    |
Nov 09 17:51:17.101 INFO kablam! 14 |     pub fn calculate_q_matrix(dm : &Array2<f64>) -> Array2<f64> {
Nov 09 17:51:17.101 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 09 17:51:17.101 INFO kablam!    |
Nov 09 17:51:17.101 INFO kablam!    = note: #[warn(dead_code)] on by default
Nov 09 17:51:17.101 INFO kablam! 
Nov 09 17:51:17.101 INFO kablam! warning: method is never used: `calculate_pair_distance_matrix`
Nov 09 17:51:17.101 INFO kablam!   --> src/tree_distance_matrix.rs:28:5
Nov 09 17:51:17.101 INFO kablam!    |
Nov 09 17:51:17.101 INFO kablam! 28 |     pub fn calculate_pair_distance_matrix(i : usize, j : usize, dm : &Array2<f64>) -> Array2<f64> {
Nov 09 17:51:17.101 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 09 17:51:17.101 INFO kablam! 
Nov 09 17:51:17.101 INFO kablam! warning: method is never used: `calculate_new_leaf_distances`
Nov 09 17:51:17.102 INFO kablam!   --> src/tree_distance_matrix.rs:66:5
Nov 09 17:51:17.102 INFO kablam!    |
Nov 09 17:51:17.102 INFO kablam! 66 |     pub fn calculate_new_leaf_distances(f : usize, g : usize, dm : &Array2<f64>) -> (f64, f64) {
Nov 09 17:51:17.102 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.102 INFO kablam! warning: method is never used: `find_min_matrix_ne`
Nov 09 17:51:17.102 INFO kablam!   --> src/tree_distance_matrix.rs:77:5
Nov 09 17:51:17.102 INFO kablam!    |
Nov 09 17:51:17.102 INFO kablam! 77 |     pub fn find_min_matrix_ne(matrix : Array2<f64>) -> [usize; 2] {
Nov 09 17:51:17.102 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.102 INFO kablam! warning: method is never used: `neighbour_joining`
Nov 09 17:51:17.102 INFO kablam!   --> src/tree_distance_matrix.rs:96:5
Nov 09 17:51:17.102 INFO kablam!    |
Nov 09 17:51:17.102 INFO kablam! 96 |     pub fn neighbour_joining(&self) -> Tree {
Nov 09 17:51:17.102 INFO kablam!    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.102 INFO kablam! warning: unused variable: `children`
Nov 09 17:51:17.102 INFO kablam!   --> src/main.rs:34:9
Nov 09 17:51:17.102 INFO kablam!    |
Nov 09 17:51:17.102 INFO kablam! 34 |     let children = parsed_tree.traverse_children();
Nov 09 17:51:17.102 INFO kablam!    |         ^^^^^^^^ help: consider using `_children` instead
Nov 09 17:51:17.102 INFO kablam!    |
Nov 09 17:51:17.102 INFO kablam!    = note: #[warn(unused_variables)] on by default
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.102 INFO kablam! warning: value assigned to `read_mode` is never read
Nov 09 17:51:17.102 INFO kablam!    --> src/tree.rs:148:21
Nov 09 17:51:17.102 INFO kablam!     |
Nov 09 17:51:17.102 INFO kablam! 148 |                     read_mode = "LEAF";
Nov 09 17:51:17.102 INFO kablam!     |                     ^^^^^^^^^
Nov 09 17:51:17.102 INFO kablam!     |
Nov 09 17:51:17.102 INFO kablam!     = note: #[warn(unused_assignments)] on by default
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.102 INFO kablam! warning: unused variable: `new_pair_dest`
Nov 09 17:51:17.102 INFO kablam!    --> src/tree_distance_matrix.rs:138:17
Nov 09 17:51:17.102 INFO kablam!     |
Nov 09 17:51:17.102 INFO kablam! 138 |             let new_pair_dest =
Nov 09 17:51:17.102 INFO kablam!     |                 ^^^^^^^^^^^^^ help: consider using `_new_pair_dest` instead
Nov 09 17:51:17.102 INFO kablam! 
Nov 09 17:51:17.209 INFO kablam! warning: variable does not need to be mutable
Nov 09 17:51:17.209 INFO kablam!    --> src/tree_distance_matrix.rs:319:13
Nov 09 17:51:17.209 INFO kablam!     |
Nov 09 17:51:17.209 INFO kablam! 319 |         let mut distance_matrix : Array2<f64 >= Array2::zeros((2, 2));
Nov 09 17:51:17.209 INFO kablam!     |             ----^^^^^^^^^^^^^^^
Nov 09 17:51:17.209 INFO kablam!     |             |
Nov 09 17:51:17.209 INFO kablam!     |             help: remove this `mut`
Nov 09 17:51:17.209 INFO kablam!     |
Nov 09 17:51:17.209 INFO kablam!     = note: #[warn(unused_mut)] on by default
Nov 09 17:51:17.209 INFO kablam! 
Nov 09 17:51:17.209 INFO kablam!     Finished dev [unoptimized + debuginfo] target(s) in 13.91s
Nov 09 17:51:17.209 INFO kablam! su: No module specific data is present
Nov 09 17:51:17.713 INFO running `"docker" "rm" "-f" "9ee875293c3d791bb483d20bc84b33fe98cdadc99c5048092a5a8260bf9ab8a5"`
Nov 09 17:51:18.019 INFO blam! 9ee875293c3d791bb483d20bc84b33fe98cdadc99c5048092a5a8260bf9ab8a5