Nov 01 13:22:44.367 INFO checking 0ncorhynchus/pdbstat against master#05812fa8c588473f03e3fa7cf59cd84f4f37c715 for pr-55538
Nov 01 13:22:44.367 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55538/worker-6/master#05812fa8c588473f03e3fa7cf59cd84f4f37c715:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-6/pr-55538/master#05812fa8c588473f03e3fa7cf59cd84f4f37c715:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +05812fa8c588473f03e3fa7cf59cd84f4f37c715-alt check --frozen --all --all-targets" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 01 13:22:44.614 INFO blam! 458f7def694cb2a04665bd998308a00241ea2c88f7c7451a01e8a4fd29e4b14e
Nov 01 13:22:44.621 INFO running `"docker" "start" "-a" "458f7def694cb2a04665bd998308a00241ea2c88f7c7451a01e8a4fd29e4b14e"`
Nov 01 13:22:45.132 INFO kablam! usermod: no changes
Nov 01 13:22:45.184 INFO kablam!    Compiling chemfiles-sys v0.7.40
Nov 01 13:23:42.851 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.7.40`
Nov 01 13:23:42.851 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-450e4e7e9b5205ef/build-script-build` (exit code: 101)
Nov 01 13:23:42.851 INFO kablam! --- stdout
Nov 01 13:23:42.851 INFO kablam! running: "cmake" "/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-67e3cf340c3291a2/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
Nov 01 13:23:42.852 INFO kablam! -- The C compiler identification is GNU 5.4.0
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Nov 01 13:23:42.854 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works
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Nov 01 13:23:42.855 INFO kablam! -- Detecting CXX compiler ABI info - done
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Nov 01 13:23:42.858 INFO kablam! -- Unpacking molfiles sources
Nov 01 13:23:42.858 INFO kablam! -- Configuring done
Nov 01 13:23:42.858 INFO kablam! -- Generating done
Nov 01 13:23:42.858 INFO kablam! -- Build files have been written to: /target/debug/build/chemfiles-sys-67e3cf340c3291a2/out/build
Nov 01 13:23:42.859 INFO kablam! running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" "-j8"
Nov 01 13:23:42.859 INFO kablam! Scanning dependencies of target fmt
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Nov 01 13:23:42.895 INFO kablam! [ 88%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/formats/Molfile.cpp.o
Nov 01 13:23:42.895 INFO kablam! [ 89%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/capi/trajectory.cpp.o
Nov 01 13:23:42.896 INFO kablam! [ 90%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/capi/errors.cpp.o
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Nov 01 13:23:42.896 INFO kablam! [ 92%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/capi/cell.cpp.o
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Nov 01 13:23:42.897 INFO kablam! [ 94%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/capi/residue.cpp.o
Nov 01 13:23:42.897 INFO kablam! [ 95%] Building CXX object chemfiles/CMakeFiles/chemfiles.dir/src/capi/selection.cpp.o
Nov 01 13:23:42.898 INFO kablam! chemfiles/CMakeFiles/chemfiles.dir/build.make:398: recipe for target 'chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o' failed
Nov 01 13:23:42.898 INFO kablam! chemfiles/CMakeFiles/chemfiles.dir/build.make:566: recipe for target 'chemfiles/CMakeFiles/chemfiles.dir/src/capi/residue.cpp.o' failed
Nov 01 13:23:42.898 INFO kablam! chemfiles/CMakeFiles/chemfiles.dir/build.make:518: recipe for target 'chemfiles/CMakeFiles/chemfiles.dir/src/capi/cell.cpp.o' failed
Nov 01 13:23:42.898 INFO kablam! CMakeFiles/Makefile2:95: recipe for target 'chemfiles/CMakeFiles/chemfiles.dir/all' failed
Nov 01 13:23:42.899 INFO kablam! Makefile:127: recipe for target 'all' failed
Nov 01 13:23:42.899 INFO kablam! 
Nov 01 13:23:42.899 INFO kablam! --- stderr
Nov 01 13:23:42.900 INFO kablam! c++: internal compiler error: Killed (program cc1plus)
Nov 01 13:23:42.900 INFO kablam! Please submit a full bug report,
Nov 01 13:23:42.900 INFO kablam! with preprocessed source if appropriate.
Nov 01 13:23:42.900 INFO kablam! See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
Nov 01 13:23:42.901 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/formats/NcFormat.cpp.o] Error 4
Nov 01 13:23:42.901 INFO kablam! make[2]: *** Waiting for unfinished jobs....
Nov 01 13:23:42.901 INFO kablam! /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/chemfiles/src/capi/residue.cpp:118:1: fatal error: error writing to /tmp/cca15v5p.s: Cannot allocate memory
Nov 01 13:23:42.901 INFO kablam!  }
Nov 01 13:23:42.902 INFO kablam!  ^
Nov 01 13:23:42.902 INFO kablam! compilation terminated.
Nov 01 13:23:42.902 INFO kablam! /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/chemfiles/src/capi/cell.cpp:145:1: fatal error: error writing to /tmp/cc9gOHSi.s: Cannot allocate memory
Nov 01 13:23:42.903 INFO kablam!  }
Nov 01 13:23:42.903 INFO kablam!  ^
Nov 01 13:23:42.903 INFO kablam! compilation terminated.
Nov 01 13:23:42.904 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/capi/residue.cpp.o] Error 1
Nov 01 13:23:42.904 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles.dir/src/capi/cell.cpp.o] Error 1
Nov 01 13:23:42.904 INFO kablam! make[1]: *** [chemfiles/CMakeFiles/chemfiles.dir/all] Error 2
Nov 01 13:23:42.904 INFO kablam! make: *** [all] Error 2
Nov 01 13:23:42.905 INFO kablam! thread 'main' panicked at '
Nov 01 13:23:42.905 INFO kablam! command did not execute successfully, got: exit code: 2
Nov 01 13:23:42.905 INFO kablam! 
Nov 01 13:23:42.906 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593:5
Nov 01 13:23:42.906 INFO kablam! stack backtrace:
Nov 01 13:23:42.906 INFO kablam!    0:     0x5629cb031ad3 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h603a42893812fd5d
Nov 01 13:23:42.907 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Nov 01 13:23:42.907 INFO kablam!    1:     0x5629cb02c598 - std::sys_common::backtrace::_print::hb9d385f125f9ee7f
Nov 01 13:23:42.907 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Nov 01 13:23:42.908 INFO kablam!    2:     0x5629cb030b74 - std::panicking::default_hook::{{closure}}::h7195bec350e97c03
Nov 01 13:23:42.908 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Nov 01 13:23:42.908 INFO kablam!                                at libstd/panicking.rs:211
Nov 01 13:23:42.908 INFO kablam!    3:     0x5629cb0308dd - std::panicking::default_hook::h27ec07f7721e7abb
Nov 01 13:23:42.909 INFO kablam!                                at libstd/panicking.rs:227
Nov 01 13:23:42.909 INFO kablam!    4:     0x5629cb0311ae - std::panicking::rust_panic_with_hook::h7d5302b37e5928cd
Nov 01 13:23:42.909 INFO kablam!                                at libstd/panicking.rs:476
Nov 01 13:23:42.909 INFO kablam!    5:     0x5629cb030d51 - std::panicking::continue_panic_fmt::hba95577092d722e1
Nov 01 13:23:42.910 INFO kablam!                                at libstd/panicking.rs:390
Nov 01 13:23:42.910 INFO kablam!    6:     0x5629cb030c9e - std::panicking::begin_panic_fmt::h5d6739f52130bbb2
Nov 01 13:23:42.910 INFO kablam!                                at libstd/panicking.rs:345
Nov 01 13:23:42.911 INFO kablam!    7:     0x5629cafe3566 - cmake::fail::h405e69ae3a1a74d3
Nov 01 13:23:42.911 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:593
Nov 01 13:23:42.911 INFO kablam!    8:     0x5629cafe2e4b - cmake::run::h5ddf2835e52d46d8
Nov 01 13:23:42.911 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:574
Nov 01 13:23:42.912 INFO kablam!    9:     0x5629cafdff9e - cmake::Config::build::h5f4d96cb52ab4baf
Nov 01 13:23:42.912 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.24/src/lib.rs:481
Nov 01 13:23:42.912 INFO kablam!   10:     0x5629cafd9403 - build_script_build::main::hcbdb195394ded8e6
Nov 01 13:23:42.913 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.7.40/build.rs:19
Nov 01 13:23:42.913 INFO kablam!   11:     0x5629cafdafff - std::rt::lang_start::{{closure}}::h58957c4b9c546c39
Nov 01 13:23:42.913 INFO kablam!                                at /rustc/05812fa8c588473f03e3fa7cf59cd84f4f37c715/src/libstd/rt.rs:74
Nov 01 13:23:42.914 INFO kablam!   12:     0x5629cb030c22 - std::panicking::try::do_call::hfb02a4b7a4fb34fd
Nov 01 13:23:42.914 INFO kablam!                                at libstd/rt.rs:59
Nov 01 13:23:42.914 INFO kablam!                                at libstd/panicking.rs:310
Nov 01 13:23:42.915 INFO kablam!   13:     0x5629cb043fd9 - __rust_maybe_catch_panic
Nov 01 13:23:42.915 INFO kablam!                                at libpanic_unwind/lib.rs:102
Nov 01 13:23:42.915 INFO kablam!   14:     0x5629cb0314e3 - std::rt::lang_start_internal::h10c6724e47f2db3a
Nov 01 13:23:42.915 INFO kablam!                                at libstd/panicking.rs:289
Nov 01 13:23:42.916 INFO kablam!                                at libstd/panic.rs:392
Nov 01 13:23:42.916 INFO kablam!                                at libstd/rt.rs:58
Nov 01 13:23:42.916 INFO kablam!   15:     0x5629cafdafd8 - std::rt::lang_start::h1f55517718410328
Nov 01 13:23:42.917 INFO kablam!                                at /rustc/05812fa8c588473f03e3fa7cf59cd84f4f37c715/src/libstd/rt.rs:74
Nov 01 13:23:42.917 INFO kablam!   16:     0x5629cafda0e9 - main
Nov 01 13:23:42.917 INFO kablam!   17:     0x7f01433d682f - __libc_start_main
Nov 01 13:23:42.918 INFO kablam!   18:     0x5629cafd9158 - _start
Nov 01 13:23:42.918 INFO kablam!   19:                0x0 - <unknown>
Nov 01 13:23:42.918 INFO kablam! 
Nov 01 13:23:42.918 INFO kablam! su: No module specific data is present
Nov 01 13:23:43.520 INFO running `"docker" "rm" "-f" "458f7def694cb2a04665bd998308a00241ea2c88f7c7451a01e8a4fd29e4b14e"`
Nov 01 13:23:43.769 INFO blam! 458f7def694cb2a04665bd998308a00241ea2c88f7c7451a01e8a4fd29e4b14e