Nov 28 16:04:57.972 INFO documenting bio-0.23.0 against try#f5a0bd723553ea4b7556bd7087b9f0919cafb483 for pr-55318
Nov 28 16:04:57.972 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55318/worker-7/try#f5a0bd723553ea4b7556bd7087b9f0919cafb483:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-7/pr-55318/try#f5a0bd723553ea4b7556bd7087b9f0919cafb483:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +f5a0bd723553ea4b7556bd7087b9f0919cafb483-alt doc --frozen --no-deps --document-private-items" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Nov 28 16:04:58.162 INFO [stdout] 1432fb4fc7a3de3af3f3e5db987b0e78caeb53b36eefa2c7d45442ac0b547dc6
Nov 28 16:04:58.169 INFO running `"docker" "start" "-a" "1432fb4fc7a3de3af3f3e5db987b0e78caeb53b36eefa2c7d45442ac0b547dc6"`
Nov 28 16:04:58.898 INFO [stderr] usermod: no changes
Nov 28 16:04:59.107 INFO [stderr]    Compiling ndarray v0.12.1
Nov 28 16:04:59.107 INFO [stderr]    Compiling bio v0.23.0 (/source)
Nov 28 16:04:59.111 INFO [stderr]    Compiling bv v0.10.0
Nov 28 16:04:59.111 INFO [stderr]     Checking statrs v0.9.0
Nov 28 16:04:59.111 INFO [stderr]     Checking bio-types v0.4.0
Nov 28 16:05:09.439 INFO [stderr]  Documenting bio v0.23.0 (/source)
Nov 28 16:05:15.187 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Nov 28 16:05:15.188 INFO [stderr]    --> src/alignment/pairwise/mod.rs:284:42
Nov 28 16:05:15.188 INFO [stderr]     |
Nov 28 16:05:15.188 INFO [stderr] 284 | /// M(i,j) is the best score such that x[i] and y[j] ends in a match
Nov 28 16:05:15.188 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Nov 28 16:05:15.189 INFO [stderr]     |
Nov 28 16:05:15.189 INFO [stderr]     = note: #[warn(intra_doc_link_resolution_failure)] on by default
Nov 28 16:05:15.189 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.190 INFO [stderr] 
Nov 28 16:05:15.190 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Nov 28 16:05:15.190 INFO [stderr]    --> src/alignment/pairwise/mod.rs:284:51
Nov 28 16:05:15.191 INFO [stderr]     |
Nov 28 16:05:15.191 INFO [stderr] 284 | /// M(i,j) is the best score such that x[i] and y[j] ends in a match
Nov 28 16:05:15.191 INFO [stderr]     |                                                   ^ cannot be resolved, ignoring
Nov 28 16:05:15.192 INFO [stderr]     |
Nov 28 16:05:15.192 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.192 INFO [stderr] 
Nov 28 16:05:15.193 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Nov 28 16:05:15.193 INFO [stderr]    --> src/alignment/pairwise/mod.rs:288:42
Nov 28 16:05:15.193 INFO [stderr]     |
Nov 28 16:05:15.194 INFO [stderr] 288 | /// I(i,j) is the best score such that x[i] is aligned with a gap
Nov 28 16:05:15.194 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Nov 28 16:05:15.194 INFO [stderr]     |
Nov 28 16:05:15.194 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.195 INFO [stderr] 
Nov 28 16:05:15.195 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Nov 28 16:05:15.196 INFO [stderr]    --> src/alignment/pairwise/mod.rs:293:42
Nov 28 16:05:15.196 INFO [stderr]     |
Nov 28 16:05:15.196 INFO [stderr] 293 | /// D(i,j) is the best score such that y[j] is aligned with a gap
Nov 28 16:05:15.197 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Nov 28 16:05:15.197 INFO [stderr]     |
Nov 28 16:05:15.197 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.198 INFO [stderr] 
Nov 28 16:05:15.198 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Nov 28 16:05:15.198 INFO [stderr]   --> src/pattern_matching/horspool.rs:23:27
Nov 28 16:05:15.199 INFO [stderr]    |
Nov 28 16:05:15.199 INFO [stderr] 23 | //! 2. shift phase: let l[a] be the rightmost position of a in
Nov 28 16:05:15.199 INFO [stderr]    |                           ^ cannot be resolved, ignoring
Nov 28 16:05:15.199 INFO [stderr]    |
Nov 28 16:05:15.200 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.200 INFO [stderr] 
Nov 28 16:05:15.200 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Nov 28 16:05:15.201 INFO [stderr]   --> src/pattern_matching/horspool.rs:25:14
Nov 28 16:05:15.201 INFO [stderr]    |
Nov 28 16:05:15.201 INFO [stderr] 25 | //!    let l[a] be -1. Shift the window by m - 1 - l[a]. I.e.
Nov 28 16:05:15.202 INFO [stderr]    |              ^ cannot be resolved, ignoring
Nov 28 16:05:15.202 INFO [stderr]    |
Nov 28 16:05:15.202 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.211 INFO [stderr] 
Nov 28 16:05:15.211 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Nov 28 16:05:15.211 INFO [stderr]   --> src/pattern_matching/horspool.rs:25:54
Nov 28 16:05:15.212 INFO [stderr]    |
Nov 28 16:05:15.212 INFO [stderr] 25 | //!    let l[a] be -1. Shift the window by m - 1 - l[a]. I.e.
Nov 28 16:05:15.212 INFO [stderr]    |                                                      ^ cannot be resolved, ignoring
Nov 28 16:05:15.213 INFO [stderr]    |
Nov 28 16:05:15.213 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.213 INFO [stderr] 
Nov 28 16:05:15.214 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Nov 28 16:05:15.214 INFO [stderr]   --> src/stats/pairhmm.rs:35:35
Nov 28 16:05:15.214 INFO [stderr]    |
Nov 28 16:05:15.214 INFO [stderr] 35 |     /// Probability to start at x[i]. This can be left unchanged if you use `free_start_gap_x` and
Nov 28 16:05:15.215 INFO [stderr]    |                                   ^ cannot be resolved, ignoring
Nov 28 16:05:15.215 INFO [stderr]    |
Nov 28 16:05:15.215 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.216 INFO [stderr] 
Nov 28 16:05:15.216 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Nov 28 16:05:15.216 INFO [stderr]   --> src/stats/pairhmm.rs:57:37
Nov 28 16:05:15.217 INFO [stderr]    |
Nov 28 16:05:15.217 INFO [stderr] 57 |     /// Emission probability for (x[i], y[j]).
Nov 28 16:05:15.217 INFO [stderr]    |                                     ^ cannot be resolved, ignoring
Nov 28 16:05:15.218 INFO [stderr]    |
Nov 28 16:05:15.218 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.218 INFO [stderr] 
Nov 28 16:05:15.219 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Nov 28 16:05:15.219 INFO [stderr]   --> src/stats/pairhmm.rs:57:43
Nov 28 16:05:15.219 INFO [stderr]    |
Nov 28 16:05:15.220 INFO [stderr] 57 |     /// Emission probability for (x[i], y[j]).
Nov 28 16:05:15.220 INFO [stderr]    |                                           ^ cannot be resolved, ignoring
Nov 28 16:05:15.220 INFO [stderr]    |
Nov 28 16:05:15.221 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.221 INFO [stderr] 
Nov 28 16:05:15.221 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Nov 28 16:05:15.221 INFO [stderr]   --> src/stats/pairhmm.rs:60:37
Nov 28 16:05:15.222 INFO [stderr]    |
Nov 28 16:05:15.222 INFO [stderr] 60 |     /// Emission probability for (x[i], -).
Nov 28 16:05:15.222 INFO [stderr]    |                                     ^ cannot be resolved, ignoring
Nov 28 16:05:15.227 INFO [stderr]    |
Nov 28 16:05:15.227 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.228 INFO [stderr] 
Nov 28 16:05:15.228 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Nov 28 16:05:15.228 INFO [stderr]   --> src/stats/pairhmm.rs:63:40
Nov 28 16:05:15.228 INFO [stderr]    |
Nov 28 16:05:15.229 INFO [stderr] 63 |     /// Emission probability for (-, y[j]).
Nov 28 16:05:15.229 INFO [stderr]    |                                        ^ cannot be resolved, ignoring
Nov 28 16:05:15.229 INFO [stderr]    |
Nov 28 16:05:15.230 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Nov 28 16:05:15.230 INFO [stderr] 
Nov 28 16:05:15.719 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 16.79s
Nov 28 16:05:15.725 INFO [stderr] su: No module specific data is present
Nov 28 16:05:16.707 INFO running `"docker" "inspect" "1432fb4fc7a3de3af3f3e5db987b0e78caeb53b36eefa2c7d45442ac0b547dc6"`
Nov 28 16:05:16.983 INFO running `"docker" "rm" "-f" "1432fb4fc7a3de3af3f3e5db987b0e78caeb53b36eefa2c7d45442ac0b547dc6"`
Nov 28 16:05:17.351 INFO [stdout] 1432fb4fc7a3de3af3f3e5db987b0e78caeb53b36eefa2c7d45442ac0b547dc6