Dec 02 09:40:19.711 INFO documenting bio-0.23.0 against try#f86f76f89ea2b1ccbfb3741962ec2029d878a389 for pr-55318-1
Dec 02 09:40:19.711 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55318-1/worker-5/try#f86f76f89ea2b1ccbfb3741962ec2029d878a389:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-5/pr-55318-1/try#f86f76f89ea2b1ccbfb3741962ec2029d878a389:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +f86f76f89ea2b1ccbfb3741962ec2029d878a389-alt doc --frozen --no-deps --document-private-items" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"`
Dec 02 09:40:19.863 INFO [stdout] c2d21246960cb3bedd5de8b0330f83e3ee12e303fb1eb13292a0effcfad693ca
Dec 02 09:40:19.866 INFO running `"docker" "start" "-a" "c2d21246960cb3bedd5de8b0330f83e3ee12e303fb1eb13292a0effcfad693ca"`
Dec 02 09:40:20.257 INFO [stderr] usermod: no changes
Dec 02 09:40:20.472 INFO [stderr]    Compiling feature-probe v0.1.1
Dec 02 09:40:20.472 INFO [stderr]    Compiling ndarray v0.12.1
Dec 02 09:40:20.472 INFO [stderr]    Compiling bio v0.23.0 (/source)
Dec 02 09:40:20.473 INFO [stderr]    Compiling newtype_derive v0.1.6
Dec 02 09:40:20.521 INFO [stderr]     Checking statrs v0.9.0
Dec 02 09:40:20.525 INFO [stderr]     Checking csv v1.0.2
Dec 02 09:40:20.525 INFO [stderr]     Checking multimap v0.4.0
Dec 02 09:40:20.538 INFO [stderr]     Checking vec_map v0.8.1
Dec 02 09:40:21.906 INFO [stderr]     Checking bio-types v0.4.0
Dec 02 09:40:23.428 INFO [stderr]    Compiling bv v0.10.0
Dec 02 09:40:32.159 INFO [stderr]  Documenting bio v0.23.0 (/source)
Dec 02 09:40:37.864 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Dec 02 09:40:37.864 INFO [stderr]    --> src/alignment/pairwise/mod.rs:284:42
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr] 284 | /// M(i,j) is the best score such that x[i] and y[j] ends in a match
Dec 02 09:40:37.864 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr]     = note: #[warn(intra_doc_link_resolution_failure)] on by default
Dec 02 09:40:37.864 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.864 INFO [stderr] 
Dec 02 09:40:37.864 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Dec 02 09:40:37.864 INFO [stderr]    --> src/alignment/pairwise/mod.rs:284:51
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr] 284 | /// M(i,j) is the best score such that x[i] and y[j] ends in a match
Dec 02 09:40:37.864 INFO [stderr]     |                                                   ^ cannot be resolved, ignoring
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.864 INFO [stderr] 
Dec 02 09:40:37.864 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Dec 02 09:40:37.864 INFO [stderr]    --> src/alignment/pairwise/mod.rs:288:42
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr] 288 | /// I(i,j) is the best score such that x[i] is aligned with a gap
Dec 02 09:40:37.864 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.864 INFO [stderr] 
Dec 02 09:40:37.864 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Dec 02 09:40:37.864 INFO [stderr]    --> src/alignment/pairwise/mod.rs:293:42
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr] 293 | /// D(i,j) is the best score such that y[j] is aligned with a gap
Dec 02 09:40:37.864 INFO [stderr]     |                                          ^ cannot be resolved, ignoring
Dec 02 09:40:37.864 INFO [stderr]     |
Dec 02 09:40:37.864 INFO [stderr]     = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.864 INFO [stderr] 
Dec 02 09:40:37.866 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Dec 02 09:40:37.866 INFO [stderr]   --> src/pattern_matching/horspool.rs:23:27
Dec 02 09:40:37.867 INFO [stderr]    |
Dec 02 09:40:37.867 INFO [stderr] 23 | //! 2. shift phase: let l[a] be the rightmost position of a in
Dec 02 09:40:37.867 INFO [stderr]    |                           ^ cannot be resolved, ignoring
Dec 02 09:40:37.867 INFO [stderr]    |
Dec 02 09:40:37.867 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.867 INFO [stderr] 
Dec 02 09:40:37.867 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Dec 02 09:40:37.867 INFO [stderr]   --> src/pattern_matching/horspool.rs:25:14
Dec 02 09:40:37.867 INFO [stderr]    |
Dec 02 09:40:37.867 INFO [stderr] 25 | //!    let l[a] be -1. Shift the window by m - 1 - l[a]. I.e.
Dec 02 09:40:37.867 INFO [stderr]    |              ^ cannot be resolved, ignoring
Dec 02 09:40:37.872 INFO [stderr]    |
Dec 02 09:40:37.872 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.872 INFO [stderr] 
Dec 02 09:40:37.872 INFO [stderr] warning: `[a]` cannot be resolved, ignoring it...
Dec 02 09:40:37.872 INFO [stderr]   --> src/pattern_matching/horspool.rs:25:54
Dec 02 09:40:37.872 INFO [stderr]    |
Dec 02 09:40:37.872 INFO [stderr] 25 | //!    let l[a] be -1. Shift the window by m - 1 - l[a]. I.e.
Dec 02 09:40:37.872 INFO [stderr]    |                                                      ^ cannot be resolved, ignoring
Dec 02 09:40:37.872 INFO [stderr]    |
Dec 02 09:40:37.872 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.872 INFO [stderr] 
Dec 02 09:40:37.872 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Dec 02 09:40:37.872 INFO [stderr]   --> src/stats/pairhmm.rs:35:35
Dec 02 09:40:37.872 INFO [stderr]    |
Dec 02 09:40:37.872 INFO [stderr] 35 |     /// Probability to start at x[i]. This can be left unchanged if you use `free_start_gap_x` and
Dec 02 09:40:37.872 INFO [stderr]    |                                   ^ cannot be resolved, ignoring
Dec 02 09:40:37.872 INFO [stderr]    |
Dec 02 09:40:37.872 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.873 INFO [stderr] 
Dec 02 09:40:37.873 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Dec 02 09:40:37.873 INFO [stderr]   --> src/stats/pairhmm.rs:57:37
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr] 57 |     /// Emission probability for (x[i], y[j]).
Dec 02 09:40:37.873 INFO [stderr]    |                                     ^ cannot be resolved, ignoring
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.873 INFO [stderr] 
Dec 02 09:40:37.873 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Dec 02 09:40:37.873 INFO [stderr]   --> src/stats/pairhmm.rs:57:43
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr] 57 |     /// Emission probability for (x[i], y[j]).
Dec 02 09:40:37.873 INFO [stderr]    |                                           ^ cannot be resolved, ignoring
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.873 INFO [stderr] 
Dec 02 09:40:37.873 INFO [stderr] warning: `[i]` cannot be resolved, ignoring it...
Dec 02 09:40:37.873 INFO [stderr]   --> src/stats/pairhmm.rs:60:37
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr] 60 |     /// Emission probability for (x[i], -).
Dec 02 09:40:37.873 INFO [stderr]    |                                     ^ cannot be resolved, ignoring
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.873 INFO [stderr] 
Dec 02 09:40:37.873 INFO [stderr] warning: `[j]` cannot be resolved, ignoring it...
Dec 02 09:40:37.873 INFO [stderr]   --> src/stats/pairhmm.rs:63:40
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr] 63 |     /// Emission probability for (-, y[j]).
Dec 02 09:40:37.873 INFO [stderr]    |                                        ^ cannot be resolved, ignoring
Dec 02 09:40:37.873 INFO [stderr]    |
Dec 02 09:40:37.873 INFO [stderr]    = help: to escape `[` and `]` characters, just add '\' before them like `\[` or `\]`
Dec 02 09:40:37.873 INFO [stderr] 
Dec 02 09:40:38.461 INFO [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 18.18s
Dec 02 09:40:38.480 INFO [stderr] su: No module specific data is present
Dec 02 09:40:39.528 INFO running `"docker" "inspect" "c2d21246960cb3bedd5de8b0330f83e3ee12e303fb1eb13292a0effcfad693ca"`
Dec 02 09:40:39.824 INFO running `"docker" "rm" "-f" "c2d21246960cb3bedd5de8b0330f83e3ee12e303fb1eb13292a0effcfad693ca"`
Dec 02 09:40:40.124 INFO [stdout] c2d21246960cb3bedd5de8b0330f83e3ee12e303fb1eb13292a0effcfad693ca