Dec 02 00:47:46.654 INFO documenting xgboost-0.1.2 against master#147e60c5f89cfa2d3ffc247413956a37582c98e7 for pr-55318-1 Dec 02 00:47:46.654 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-55318-1/worker-0/master#147e60c5f89cfa2d3ffc247413956a37582c98e7:/target:rw,Z" "-v" "/mnt/big/crater/work/local/test-source/worker-0/pr-55318-1/master#147e60c5f89cfa2d3ffc247413956a37582c98e7:/source:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +147e60c5f89cfa2d3ffc247413956a37582c98e7-alt doc --frozen --no-deps --document-private-items" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Dec 02 00:47:47.100 INFO [stdout] 9ae923b37ef2e168632f6a589ec86cfb2f05a7c400612f0518946b35077773e4 Dec 02 00:47:47.108 INFO running `"docker" "start" "-a" "9ae923b37ef2e168632f6a589ec86cfb2f05a7c400612f0518946b35077773e4"` Dec 02 00:47:48.196 INFO [stderr] usermod: no changes Dec 02 00:47:48.515 INFO [stderr] Compiling bindgen v0.36.1 Dec 02 00:47:48.515 INFO [stderr] Compiling clang-sys v0.22.0 Dec 02 00:47:48.515 INFO [stderr] Compiling regex-syntax v0.6.4 Dec 02 00:47:48.515 INFO [stderr] Compiling regex-syntax v0.5.6 Dec 02 00:47:48.515 INFO [stderr] Compiling humantime v1.2.0 Dec 02 00:47:48.518 INFO [stderr] Compiling memchr v1.0.2 Dec 02 00:47:48.518 INFO [stderr] Compiling which v1.0.5 Dec 02 00:47:48.518 INFO [stderr] Compiling clap v2.32.0 Dec 02 00:47:52.515 INFO [stderr] Checking tempfile v3.0.5 Dec 02 00:47:52.518 INFO [stderr] Compiling nom v3.2.1 Dec 02 00:48:12.257 INFO [stderr] Compiling cexpr v0.2.3 Dec 02 00:48:18.704 INFO [stderr] Compiling regex v0.2.11 Dec 02 00:48:19.464 INFO [stderr] Compiling regex v1.1.0 Dec 02 00:48:51.906 INFO [stderr] Compiling env_logger v0.5.13 Dec 02 00:49:13.044 INFO [stderr] Compiling xgboost-sys v0.1.1 Dec 02 00:52:51.798 INFO [stderr] error: failed to run custom build command for `xgboost-sys v0.1.1` Dec 02 00:52:51.798 INFO [stderr] process didn't exit successfully: `/target/debug/build/xgboost-sys-af5c6c11cf58001f/build-script-build` (exit code: 101) Dec 02 00:52:51.798 INFO [stderr] --- stdout Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/logging.cc -o build/logging.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/learner.cc -o build/learner.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/predictor/predictor.o src/predictor/predictor.cc >build/predictor/predictor.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/predictor/predictor.cc -o build/predictor/predictor.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/predictor/cpu_predictor.o src/predictor/cpu_predictor.cc >build/predictor/cpu_predictor.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/predictor/cpu_predictor.cc -o build/predictor/cpu_predictor.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/common/host_device_vector.o src/common/host_device_vector.cc >build/common/host_device_vector.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/common/host_device_vector.cc -o build/common/host_device_vector.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/common/common.o src/common/common.cc >build/common/common.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/common/common.cc -o build/common/common.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/common/hist_util.o src/common/hist_util.cc >build/common/hist_util.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/common/hist_util.cc -o build/common/hist_util.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/metric/metric.o src/metric/metric.cc >build/metric/metric.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/metric/metric.cc -o build/metric/metric.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/metric/rank_metric.o src/metric/rank_metric.cc >build/metric/rank_metric.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/metric/rank_metric.cc -o build/metric/rank_metric.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/metric/elementwise_metric.o src/metric/elementwise_metric.cc >build/metric/elementwise_metric.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/metric/elementwise_metric.cc -o build/metric/elementwise_metric.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/metric/multiclass_metric.o src/metric/multiclass_metric.cc >build/metric/multiclass_metric.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/metric/multiclass_metric.cc -o build/metric/multiclass_metric.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/objective/hinge.o src/objective/hinge.cc >build/objective/hinge.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/objective/hinge.cc -o build/objective/hinge.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/objective/multiclass_obj.o src/objective/multiclass_obj.cc >build/objective/multiclass_obj.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/objective/multiclass_obj.cc -o build/objective/multiclass_obj.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/objective/objective.o src/objective/objective.cc >build/objective/objective.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/objective/objective.cc -o build/objective/objective.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/objective/rank_obj.o src/objective/rank_obj.cc >build/objective/rank_obj.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/objective/rank_obj.cc -o build/objective/rank_obj.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/objective/regression_obj.o src/objective/regression_obj.cc >build/objective/regression_obj.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/objective/regression_obj.cc -o build/objective/regression_obj.o Dec 02 00:52:51.798 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/sparse_page_dmatrix.o src/data/sparse_page_dmatrix.cc >build/data/sparse_page_dmatrix.d Dec 02 00:52:51.798 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/sparse_page_dmatrix.cc -o build/data/sparse_page_dmatrix.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/sparse_page_source.o src/data/sparse_page_source.cc >build/data/sparse_page_source.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/sparse_page_source.cc -o build/data/sparse_page_source.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/sparse_page_writer.o src/data/sparse_page_writer.cc >build/data/sparse_page_writer.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/sparse_page_writer.cc -o build/data/sparse_page_writer.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/simple_csr_source.o src/data/simple_csr_source.cc >build/data/simple_csr_source.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/simple_csr_source.cc -o build/data/simple_csr_source.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/data.o src/data/data.cc >build/data/data.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/data.cc -o build/data/data.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/sparse_page_raw_format.o src/data/sparse_page_raw_format.cc >build/data/sparse_page_raw_format.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/sparse_page_raw_format.cc -o build/data/sparse_page_raw_format.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/data/simple_dmatrix.o src/data/simple_dmatrix.cc >build/data/simple_dmatrix.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/data/simple_dmatrix.cc -o build/data/simple_dmatrix.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_prune.o src/tree/updater_prune.cc >build/tree/updater_prune.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_prune.cc -o build/tree/updater_prune.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/tree_updater.o src/tree/tree_updater.cc >build/tree/tree_updater.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/tree_updater.cc -o build/tree/tree_updater.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_histmaker.o src/tree/updater_histmaker.cc >build/tree/updater_histmaker.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_histmaker.cc -o build/tree/updater_histmaker.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/split_evaluator.o src/tree/split_evaluator.cc >build/tree/split_evaluator.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/split_evaluator.cc -o build/tree/split_evaluator.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_refresh.o src/tree/updater_refresh.cc >build/tree/updater_refresh.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_refresh.cc -o build/tree/updater_refresh.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/tree_model.o src/tree/tree_model.cc >build/tree/tree_model.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/tree_model.cc -o build/tree/tree_model.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_sync.o src/tree/updater_sync.cc >build/tree/updater_sync.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_sync.cc -o build/tree/updater_sync.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_skmaker.o src/tree/updater_skmaker.cc >build/tree/updater_skmaker.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_skmaker.cc -o build/tree/updater_skmaker.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_colmaker.o src/tree/updater_colmaker.cc >build/tree/updater_colmaker.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_colmaker.cc -o build/tree/updater_colmaker.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/tree/updater_fast_hist.o src/tree/updater_fast_hist.cc >build/tree/updater_fast_hist.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/tree/updater_fast_hist.cc -o build/tree/updater_fast_hist.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/gbm/gbtree.o src/gbm/gbtree.cc >build/gbm/gbtree.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/gbm/gbtree.cc -o build/gbm/gbtree.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/gbm/gblinear.o src/gbm/gblinear.cc >build/gbm/gblinear.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/gbm/gblinear.cc -o build/gbm/gblinear.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/gbm/gbm.o src/gbm/gbm.cc >build/gbm/gbm.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/gbm/gbm.cc -o build/gbm/gbm.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/c_api/c_api.o src/c_api/c_api.cc >build/c_api/c_api.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/c_api/c_api.cc -o build/c_api/c_api.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/c_api/c_api_error.o src/c_api/c_api_error.cc >build/c_api/c_api_error.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/c_api/c_api_error.cc -o build/c_api/c_api_error.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/linear/linear_updater.o src/linear/linear_updater.cc >build/linear/linear_updater.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/linear/linear_updater.cc -o build/linear/linear_updater.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/linear/updater_shotgun.o src/linear/updater_shotgun.cc >build/linear/updater_shotgun.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/linear/updater_shotgun.cc -o build/linear/updater_shotgun.o Dec 02 00:52:51.799 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/linear/updater_coordinate.o src/linear/updater_coordinate.cc >build/linear/updater_coordinate.d Dec 02 00:52:51.799 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/linear/updater_coordinate.cc -o build/linear/updater_coordinate.o Dec 02 00:52:51.799 INFO [stderr] cd dmlc-core; "make" libdmlc.a config=/target/debug/build/xgboost-sys-972129a60e983040/out/xgboost/make/config.mk; cd /target/debug/build/xgboost-sys-972129a60e983040/out/xgboost Dec 02 00:52:51.799 INFO [stderr] make[1]: Entering directory '/target/debug/build/xgboost-sys-972129a60e983040/out/xgboost/dmlc-core' Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o line_split.o src/io/line_split.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o indexed_recordio_split.o src/io/indexed_recordio_split.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o recordio_split.o src/io/recordio_split.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o input_split_base.o src/io/input_split_base.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o io.o src/io.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o filesys.o src/io/filesys.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o local_filesys.o src/io/local_filesys.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o data.o src/data.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o recordio.o src/recordio.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wno-unknown-pragmas -Iinclude -std=c++0x -fopenmp -fPIC -DDMLC_USE_HDFS=0 -DDMLC_USE_S3=0 -DDMLC_USE_AZURE=0 -msse2 -o config.o src/config.cc Dec 02 00:52:51.799 INFO [stderr] ar cr libdmlc.a line_split.o indexed_recordio_split.o recordio_split.o input_split_base.o io.o filesys.o local_filesys.o data.o recordio.o config.o Dec 02 00:52:51.799 INFO [stderr] make[1]: Leaving directory '/target/debug/build/xgboost-sys-972129a60e983040/out/xgboost/dmlc-core' Dec 02 00:52:51.799 INFO [stderr] cd rabit; "make" lib/librabit.a USE_SSE=1; cd /target/debug/build/xgboost-sys-972129a60e983040/out/xgboost Dec 02 00:52:51.799 INFO [stderr] make[1]: Entering directory '/target/debug/build/xgboost-sys-972129a60e983040/out/xgboost/rabit' Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -msse2 -fPIC -o allreduce_base.o src/allreduce_base.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -msse2 -fPIC -o allreduce_robust.o src/allreduce_robust.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -msse2 -fPIC -o engine.o src/engine.cc Dec 02 00:52:51.799 INFO [stderr] g++ -c -O3 -Wall -Wextra -Wno-unused-parameter -Wno-unknown-pragmas -std=c++0x -msse2 -fPIC -o c_api.o src/c_api.cc Dec 02 00:52:51.799 INFO [stderr] ar cr lib/librabit.a allreduce_base.o allreduce_robust.o engine.o c_api.o Dec 02 00:52:51.799 INFO [stderr] make[1]: Leaving directory '/target/debug/build/xgboost-sys-972129a60e983040/out/xgboost/rabit' Dec 02 00:52:51.799 INFO [stderr] ar crv lib/libxgboost.a build/logging.o build/learner.o build/predictor/predictor.o build/predictor/cpu_predictor.o build/common/host_device_vector.o build/common/common.o build/common/hist_util.o build/metric/metric.o build/metric/rank_metric.o build/metric/elementwise_metric.o build/metric/multiclass_metric.o build/objective/hinge.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/data/sparse_page_dmatrix.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/data/simple_csr_source.o build/data/data.o build/data/sparse_page_raw_format.o build/data/simple_dmatrix.o build/tree/updater_prune.o build/tree/tree_updater.o build/tree/updater_histmaker.o build/tree/split_evaluator.o build/tree/updater_refresh.o build/tree/tree_model.o build/tree/updater_sync.o build/tree/updater_skmaker.o build/tree/updater_colmaker.o build/tree/updater_fast_hist.o build/gbm/gbtree.o build/gbm/gblinear.o build/gbm/gbm.o build/c_api/c_api.o build/c_api/c_api_error.o build/linear/linear_updater.o build/linear/updater_shotgun.o build/linear/updater_coordinate.o Dec 02 00:52:51.799 INFO [stderr] a - build/logging.o Dec 02 00:52:51.799 INFO [stderr] a - build/learner.o Dec 02 00:52:51.799 INFO [stderr] a - build/predictor/predictor.o Dec 02 00:52:51.799 INFO [stderr] a - build/predictor/cpu_predictor.o Dec 02 00:52:51.799 INFO [stderr] a - build/common/host_device_vector.o Dec 02 00:52:51.799 INFO [stderr] a - build/common/common.o Dec 02 00:52:51.799 INFO [stderr] a - build/common/hist_util.o Dec 02 00:52:51.799 INFO [stderr] a - build/metric/metric.o Dec 02 00:52:51.799 INFO [stderr] a - build/metric/rank_metric.o Dec 02 00:52:51.799 INFO [stderr] a - build/metric/elementwise_metric.o Dec 02 00:52:51.799 INFO [stderr] a - build/metric/multiclass_metric.o Dec 02 00:52:51.799 INFO [stderr] a - build/objective/hinge.o Dec 02 00:52:51.799 INFO [stderr] a - build/objective/multiclass_obj.o Dec 02 00:52:51.799 INFO [stderr] a - build/objective/objective.o Dec 02 00:52:51.799 INFO [stderr] a - build/objective/rank_obj.o Dec 02 00:52:51.799 INFO [stderr] a - build/objective/regression_obj.o Dec 02 00:52:51.799 INFO [stderr] a - build/data/sparse_page_dmatrix.o Dec 02 00:52:51.799 INFO [stderr] a - build/data/sparse_page_source.o Dec 02 00:52:51.799 INFO [stderr] a - build/data/sparse_page_writer.o Dec 02 00:52:51.800 INFO [stderr] a - build/data/simple_csr_source.o Dec 02 00:52:51.800 INFO [stderr] a - build/data/data.o Dec 02 00:52:51.800 INFO [stderr] a - build/data/sparse_page_raw_format.o Dec 02 00:52:51.800 INFO [stderr] a - build/data/simple_dmatrix.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_prune.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/tree_updater.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_histmaker.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/split_evaluator.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_refresh.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/tree_model.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_sync.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_skmaker.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_colmaker.o Dec 02 00:52:51.800 INFO [stderr] a - build/tree/updater_fast_hist.o Dec 02 00:52:51.800 INFO [stderr] a - build/gbm/gbtree.o Dec 02 00:52:51.800 INFO [stderr] a - build/gbm/gblinear.o Dec 02 00:52:51.800 INFO [stderr] a - build/gbm/gbm.o Dec 02 00:52:51.800 INFO [stderr] a - build/c_api/c_api.o Dec 02 00:52:51.800 INFO [stderr] a - build/c_api/c_api_error.o Dec 02 00:52:51.800 INFO [stderr] a - build/linear/linear_updater.o Dec 02 00:52:51.800 INFO [stderr] a - build/linear/updater_shotgun.o Dec 02 00:52:51.800 INFO [stderr] a - build/linear/updater_coordinate.o Dec 02 00:52:51.800 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -shared -o lib/libxgboost.so build/logging.o build/learner.o build/predictor/predictor.o build/predictor/cpu_predictor.o build/common/host_device_vector.o build/common/common.o build/common/hist_util.o build/metric/metric.o build/metric/rank_metric.o build/metric/elementwise_metric.o build/metric/multiclass_metric.o build/objective/hinge.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/data/sparse_page_dmatrix.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/data/simple_csr_source.o build/data/data.o build/data/sparse_page_raw_format.o build/data/simple_dmatrix.o build/tree/updater_prune.o build/tree/tree_updater.o build/tree/updater_histmaker.o build/tree/split_evaluator.o build/tree/updater_refresh.o build/tree/tree_model.o build/tree/updater_sync.o build/tree/updater_skmaker.o build/tree/updater_colmaker.o build/tree/updater_fast_hist.o build/gbm/gbtree.o build/gbm/gblinear.o build/gbm/gbm.o build/c_api/c_api.o build/c_api/c_api_error.o build/linear/linear_updater.o build/linear/updater_shotgun.o build/linear/updater_coordinate.o dmlc-core/libdmlc.a rabit/lib/librabit.a -pthread -lm -fopenmp -lrt -lrt Dec 02 00:52:51.800 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/cli_main.o src/cli_main.cc >build/cli_main.d Dec 02 00:52:51.800 INFO [stderr] g++ -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/cli_main.cc -o build/cli_main.o Dec 02 00:52:51.800 INFO [stderr] g++ -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -o xgboost build/cli_main.o build/logging.o build/learner.o build/predictor/predictor.o build/predictor/cpu_predictor.o build/common/host_device_vector.o build/common/common.o build/common/hist_util.o build/metric/metric.o build/metric/rank_metric.o build/metric/elementwise_metric.o build/metric/multiclass_metric.o build/objective/hinge.o build/objective/multiclass_obj.o build/objective/objective.o build/objective/rank_obj.o build/objective/regression_obj.o build/data/sparse_page_dmatrix.o build/data/sparse_page_source.o build/data/sparse_page_writer.o build/data/simple_csr_source.o build/data/data.o build/data/sparse_page_raw_format.o build/data/simple_dmatrix.o build/tree/updater_prune.o build/tree/tree_updater.o build/tree/updater_histmaker.o build/tree/split_evaluator.o build/tree/updater_refresh.o build/tree/tree_model.o build/tree/updater_sync.o build/tree/updater_skmaker.o build/tree/updater_colmaker.o build/tree/updater_fast_hist.o build/gbm/gbtree.o build/gbm/gblinear.o build/gbm/gbm.o build/c_api/c_api.o build/c_api/c_api_error.o build/linear/linear_updater.o build/linear/updater_shotgun.o build/linear/updater_coordinate.o dmlc-core/libdmlc.a rabit/lib/librabit.a -pthread -lm -fopenmp -lrt -lrt Dec 02 00:52:51.800 INFO [stderr] Successfully build multi-thread xgboost Dec 02 00:52:51.800 INFO [stderr] Dec 02 00:52:51.800 INFO [stderr] --- stderr Dec 02 00:52:51.800 INFO [stderr] Makefile:31: MAKE [make] - checked OK Dec 02 00:52:51.800 INFO [stderr] src/c_api/c_api.cc: In function 'int XGDMatrixCreateFromDT(void**, const char**, xgboost::bst_ulong, xgboost::bst_ulong, void**, int)': Dec 02 00:52:51.800 INFO [stderr] src/c_api/c_api.cc:621:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] Dec 02 00:52:51.800 INFO [stderr] for (auto j = 0; j < ncol; ++j) { Dec 02 00:52:51.800 INFO [stderr] ^ Dec 02 00:52:51.800 INFO [stderr] /usr/include/stdio.h:33:11: fatal error: 'stddef.h' file not found Dec 02 00:52:51.800 INFO [stderr] /usr/include/stdio.h:33:11: fatal error: 'stddef.h' file not found, err: true Dec 02 00:52:51.800 INFO [stderr] thread 'main' panicked at 'Unable to generate bindings.: ()', src/libcore/result.rs:1009:5 Dec 02 00:52:51.800 INFO [stderr] stack backtrace: Dec 02 00:52:51.800 INFO [stderr] 0: 0x5560c936b5a3 - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hcb28dc0c2826de8b Dec 02 00:52:51.800 INFO [stderr] at src/libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Dec 02 00:52:51.800 INFO [stderr] 1: 0x5560c9365cd8 - std::sys_common::backtrace::_print::hf687e8df1142751b Dec 02 00:52:51.800 INFO [stderr] at src/libstd/sys_common/backtrace.rs:71 Dec 02 00:52:51.800 INFO [stderr] 2: 0x5560c936a512 - std::panicking::default_hook::{{closure}}::h47617f25395f09c5 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/sys_common/backtrace.rs:59 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:211 Dec 02 00:52:51.800 INFO [stderr] 3: 0x5560c936a27d - std::panicking::default_hook::h4ec0eba8c15486a6 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:227 Dec 02 00:52:51.800 INFO [stderr] 4: 0x5560c936ac20 - std::panicking::rust_panic_with_hook::h96e1141c0cece827 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:476 Dec 02 00:52:51.800 INFO [stderr] 5: 0x5560c936a7a1 - std::panicking::continue_panic_fmt::hc764a185670a56e5 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:390 Dec 02 00:52:51.800 INFO [stderr] 6: 0x5560c936a685 - rust_begin_unwind Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:325 Dec 02 00:52:51.800 INFO [stderr] 7: 0x5560c93843dc - core::panicking::panic_fmt::hff50b88731a7e1ba Dec 02 00:52:51.800 INFO [stderr] at src/libcore/panicking.rs:77 Dec 02 00:52:51.800 INFO [stderr] 8: 0x5560c8d6a141 - core::result::unwrap_failed::hf7be94a4a011f14d Dec 02 00:52:51.800 INFO [stderr] at /rustc/147e60c5f89cfa2d3ffc247413956a37582c98e7/src/libcore/macros.rs:26 Dec 02 00:52:51.800 INFO [stderr] 9: 0x5560c8d69e91 - >::expect::hf5ab5a7d26e8e433 Dec 02 00:52:51.800 INFO [stderr] at /rustc/147e60c5f89cfa2d3ffc247413956a37582c98e7/src/libcore/result.rs:835 Dec 02 00:52:51.800 INFO [stderr] 10: 0x5560c8d68490 - build_script_build::main::h8b0b6e4bdd4744f7 Dec 02 00:52:51.800 INFO [stderr] at /cargo-home/registry/src/github.com-1ecc6299db9ec823/xgboost-sys-0.1.1/build.rs:35 Dec 02 00:52:51.800 INFO [stderr] 11: 0x5560c8d6993f - std::rt::lang_start::{{closure}}::h8c7efe99f62d2dc2 Dec 02 00:52:51.800 INFO [stderr] at /rustc/147e60c5f89cfa2d3ffc247413956a37582c98e7/src/libstd/rt.rs:74 Dec 02 00:52:51.800 INFO [stderr] 12: 0x5560c936a622 - std::panicking::try::do_call::h22d580a2ec5c077f Dec 02 00:52:51.800 INFO [stderr] at src/libstd/rt.rs:59 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:310 Dec 02 00:52:51.800 INFO [stderr] 13: 0x5560c937e2b9 - __rust_maybe_catch_panic Dec 02 00:52:51.800 INFO [stderr] at src/libpanic_unwind/lib.rs:102 Dec 02 00:52:51.800 INFO [stderr] 14: 0x5560c936aff3 - std::rt::lang_start_internal::h49c34c0a10516ec8 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panicking.rs:289 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/panic.rs:398 Dec 02 00:52:51.800 INFO [stderr] at src/libstd/rt.rs:58 Dec 02 00:52:51.800 INFO [stderr] 15: 0x5560c8d69918 - std::rt::lang_start::h5a4bb23a6df3f08b Dec 02 00:52:51.800 INFO [stderr] at /rustc/147e60c5f89cfa2d3ffc247413956a37582c98e7/src/libstd/rt.rs:74 Dec 02 00:52:51.800 INFO [stderr] 16: 0x5560c8d69149 - main Dec 02 00:52:51.800 INFO [stderr] 17: 0x7f6035ca582f - __libc_start_main Dec 02 00:52:51.800 INFO [stderr] 18: 0x5560c8d67a28 - _start Dec 02 00:52:51.800 INFO [stderr] 19: 0x0 - Dec 02 00:52:51.800 INFO [stderr] Dec 02 00:52:51.812 INFO [stderr] su: No module specific data is present Dec 02 00:52:52.554 INFO running `"docker" "inspect" "9ae923b37ef2e168632f6a589ec86cfb2f05a7c400612f0518946b35077773e4"` Dec 02 00:52:52.810 INFO running `"docker" "rm" "-f" "9ae923b37ef2e168632f6a589ec86cfb2f05a7c400612f0518946b35077773e4"` Dec 02 00:52:53.118 INFO [stdout] 9ae923b37ef2e168632f6a589ec86cfb2f05a7c400612f0518946b35077773e4