Oct 27 09:20:13.228 INFO checking TuBieJun/consensus against master#155510e377ae2a8d8ee0dad1a5f809c9062a5526 for pr-55192-2 Oct 27 09:20:13.228 INFO running `"docker" "create" "-v" "/mnt/big/crater/./work/local/target-dirs/pr-55192-2/worker-5/master#155510e377ae2a8d8ee0dad1a5f809c9062a5526:/target:rw,Z" "-v" "/mnt/big/crater/./work/local/test-source/worker-5/pr-55192-2/master#155510e377ae2a8d8ee0dad1a5f809c9062a5526:/source:ro,Z" "-v" "/mnt/big/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/mnt/big/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/source" "-e" "USER_ID=1000" "-e" "CMD=cargo +155510e377ae2a8d8ee0dad1a5f809c9062a5526-alt check --frozen --all --all-targets" "-e" "CARGO_TARGET_DIR=/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/cargo-home" "-e" "RUSTUP_HOME=/rustup-home" "-m" "1536M" "--network" "none" "crater"` Oct 27 09:20:13.697 INFO blam! da19df2426b4a72e155f2a587d4eb870081b3137735a31e1c551a013bc8bcaab Oct 27 09:20:13.700 INFO running `"docker" "start" "-a" "da19df2426b4a72e155f2a587d4eb870081b3137735a31e1c551a013bc8bcaab"` Oct 27 09:20:16.183 INFO kablam! usermod: no changes Oct 27 09:20:16.307 INFO kablam! Checking ieee754 v0.2.2 Oct 27 09:20:16.307 INFO kablam! Compiling fs-utils v1.0.0 Oct 27 09:20:16.311 INFO kablam! Checking itertools v0.6.5 Oct 27 09:20:16.315 INFO kablam! Checking clap v2.29.0 Oct 27 09:20:18.915 INFO kablam! Compiling rust-htslib v0.15.0 Oct 27 09:20:54.071 INFO kablam! Checking consensus v0.1.0 (/source) Oct 27 09:20:56.103 INFO kablam! warning: unused import: `std::env` Oct 27 09:20:56.104 INFO kablam! --> src/main.rs:12:5 Oct 27 09:20:56.104 INFO kablam! | Oct 27 09:20:56.104 INFO kablam! 12 | use std::env; Oct 27 09:20:56.105 INFO kablam! | ^^^^^^^^ Oct 27 09:20:56.105 INFO kablam! | Oct 27 09:20:56.105 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 27 09:20:56.105 INFO kablam! Oct 27 09:20:56.106 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 27 09:20:56.106 INFO kablam! --> src/main.rs:16:5 Oct 27 09:20:56.106 INFO kablam! | Oct 27 09:20:56.107 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 27 09:20:56.107 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.107 INFO kablam! Oct 27 09:20:56.107 INFO kablam! warning: unused import: `std::io` Oct 27 09:20:56.108 INFO kablam! --> src/main.rs:21:5 Oct 27 09:20:56.108 INFO kablam! | Oct 27 09:20:56.108 INFO kablam! 21 | use std::io; Oct 27 09:20:56.109 INFO kablam! | ^^^^^^^ Oct 27 09:20:56.109 INFO kablam! Oct 27 09:20:56.109 INFO kablam! warning: unused import: `PathBuf` Oct 27 09:20:56.110 INFO kablam! --> src/main.rs:25:23 Oct 27 09:20:56.110 INFO kablam! | Oct 27 09:20:56.110 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 27 09:20:56.110 INFO kablam! | ^^^^^^^ Oct 27 09:20:56.111 INFO kablam! Oct 27 09:20:56.111 INFO kablam! warning: unused import: `SubCommand` Oct 27 09:20:56.111 INFO kablam! --> src/main.rs:26:22 Oct 27 09:20:56.112 INFO kablam! | Oct 27 09:20:56.112 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 27 09:20:56.112 INFO kablam! | ^^^^^^^^^^ Oct 27 09:20:56.112 INFO kablam! Oct 27 09:20:56.114 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 27 09:20:56.115 INFO kablam! --> src/main.rs:218:20 Oct 27 09:20:56.115 INFO kablam! | Oct 27 09:20:56.115 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 27 09:20:56.115 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 27 09:20:56.115 INFO kablam! | Oct 27 09:20:56.115 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 27 09:20:56.115 INFO kablam! Oct 27 09:20:56.115 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 27 09:20:56.115 INFO kablam! --> src/main.rs:239:16 Oct 27 09:20:56.115 INFO kablam! | Oct 27 09:20:56.115 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 27 09:20:56.115 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 27 09:20:56.115 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unused import: `std::env` Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:12:5 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 12 | use std::env; Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^^ Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! = note: #[warn(unused_imports)] on by default Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:16:5 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 16 | use rust_htslib::prelude::*; Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unused import: `std::io` Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:21:5 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 21 | use std::io; Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^ Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unused import: `PathBuf` Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:25:23 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 25 | use std::path::{Path, PathBuf}; Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^ Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unused import: `SubCommand` Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:26:22 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^^^^ Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:218:20 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! = note: #[warn(unused_parens)] on by default Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.195 INFO kablam! warning: unnecessary parentheses around `if` condition Oct 27 09:20:56.195 INFO kablam! --> src/main.rs:239:16 Oct 27 09:20:56.195 INFO kablam! | Oct 27 09:20:56.195 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Oct 27 09:20:56.195 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Oct 27 09:20:56.195 INFO kablam! Oct 27 09:20:56.355 INFO kablam! warning: unused import: `std::io::prelude` Oct 27 09:20:56.355 INFO kablam! --> src/main.rs:22:5 Oct 27 09:20:56.355 INFO kablam! | Oct 27 09:20:56.355 INFO kablam! 22 | use std::io::prelude::*; Oct 27 09:20:56.355 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 27 09:20:56.355 INFO kablam! Oct 27 09:20:56.377 INFO kablam! warning: unused variable: `consensus_base` Oct 27 09:20:56.377 INFO kablam! --> src/main.rs:139:9 Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 27 09:20:56.377 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 27 09:20:56.377 INFO kablam! Oct 27 09:20:56.377 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 27 09:20:56.377 INFO kablam! --> src/main.rs:144:13 Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 27 09:20:56.377 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 27 09:20:56.377 INFO kablam! Oct 27 09:20:56.377 INFO kablam! warning: unused variable: `chrom` Oct 27 09:20:56.377 INFO kablam! --> src/main.rs:283:121 Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 27 09:20:56.377 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 27 09:20:56.377 INFO kablam! Oct 27 09:20:56.377 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 27 09:20:56.377 INFO kablam! --> src/main.rs:370:21 Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 27 09:20:56.377 INFO kablam! | ^^^^^^^^^ Oct 27 09:20:56.377 INFO kablam! | Oct 27 09:20:56.377 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 27 09:20:56.377 INFO kablam! Oct 27 09:20:56.391 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.391 INFO kablam! --> src/main.rs:74:9 Oct 27 09:20:56.391 INFO kablam! | Oct 27 09:20:56.391 INFO kablam! 74 | let mut pair; Oct 27 09:20:56.391 INFO kablam! | ----^^^^ Oct 27 09:20:56.391 INFO kablam! | | Oct 27 09:20:56.391 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.391 INFO kablam! | Oct 27 09:20:56.391 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 27 09:20:56.391 INFO kablam! Oct 27 09:20:56.391 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.391 INFO kablam! --> src/main.rs:75:9 Oct 27 09:20:56.391 INFO kablam! | Oct 27 09:20:56.391 INFO kablam! 75 | let mut strand; Oct 27 09:20:56.391 INFO kablam! | ----^^^^^^ Oct 27 09:20:56.391 INFO kablam! | | Oct 27 09:20:56.391 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.391 INFO kablam! Oct 27 09:20:56.391 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.391 INFO kablam! --> src/main.rs:76:9 Oct 27 09:20:56.391 INFO kablam! | Oct 27 09:20:56.391 INFO kablam! 76 | let mut aln_pos; Oct 27 09:20:56.391 INFO kablam! | ----^^^^^^^ Oct 27 09:20:56.391 INFO kablam! | | Oct 27 09:20:56.391 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.391 INFO kablam! Oct 27 09:20:56.439 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.439 INFO kablam! --> src/main.rs:144:9 Oct 27 09:20:56.439 INFO kablam! | Oct 27 09:20:56.439 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 27 09:20:56.439 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.439 INFO kablam! | | Oct 27 09:20:56.439 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.439 INFO kablam! Oct 27 09:20:56.439 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.439 INFO kablam! --> src/main.rs:151:9 Oct 27 09:20:56.439 INFO kablam! | Oct 27 09:20:56.439 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 27 09:20:56.439 INFO kablam! | ----^^^^^^^^^ Oct 27 09:20:56.439 INFO kablam! | | Oct 27 09:20:56.439 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.439 INFO kablam! Oct 27 09:20:56.459 INFO kablam! warning: unused import: `std::io::prelude` Oct 27 09:20:56.459 INFO kablam! --> src/main.rs:22:5 Oct 27 09:20:56.459 INFO kablam! | Oct 27 09:20:56.459 INFO kablam! 22 | use std::io::prelude::*; Oct 27 09:20:56.459 INFO kablam! | ^^^^^^^^^^^^^^^^ Oct 27 09:20:56.459 INFO kablam! Oct 27 09:20:56.459 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.459 INFO kablam! --> src/main.rs:338:9 Oct 27 09:20:56.459 INFO kablam! | Oct 27 09:20:56.459 INFO kablam! 338 | let mut need_trim:bool; Oct 27 09:20:56.459 INFO kablam! | ----^^^^^^^^^ Oct 27 09:20:56.459 INFO kablam! | | Oct 27 09:20:56.459 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.459 INFO kablam! Oct 27 09:20:56.459 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.459 INFO kablam! --> src/main.rs:355:9 Oct 27 09:20:56.459 INFO kablam! | Oct 27 09:20:56.459 INFO kablam! 355 | let mut chrom = 0; Oct 27 09:20:56.459 INFO kablam! | ----^^^^^ Oct 27 09:20:56.459 INFO kablam! | | Oct 27 09:20:56.459 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.459 INFO kablam! Oct 27 09:20:56.479 INFO kablam! warning: unused variable: `consensus_base` Oct 27 09:20:56.479 INFO kablam! --> src/main.rs:139:9 Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Oct 27 09:20:56.479 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! = note: #[warn(unused_variables)] on by default Oct 27 09:20:56.479 INFO kablam! Oct 27 09:20:56.479 INFO kablam! warning: unused variable: `consensus_source_reads` Oct 27 09:20:56.479 INFO kablam! --> src/main.rs:144:13 Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 27 09:20:56.479 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Oct 27 09:20:56.479 INFO kablam! Oct 27 09:20:56.479 INFO kablam! warning: unused variable: `chrom` Oct 27 09:20:56.479 INFO kablam! --> src/main.rs:283:121 Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Oct 27 09:20:56.479 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Oct 27 09:20:56.479 INFO kablam! Oct 27 09:20:56.479 INFO kablam! warning: value assigned to `new_seq_b` is never read Oct 27 09:20:56.479 INFO kablam! --> src/main.rs:370:21 Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Oct 27 09:20:56.479 INFO kablam! | ^^^^^^^^^ Oct 27 09:20:56.479 INFO kablam! | Oct 27 09:20:56.479 INFO kablam! = note: #[warn(unused_assignments)] on by default Oct 27 09:20:56.479 INFO kablam! Oct 27 09:20:56.487 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 27 09:20:56.487 INFO kablam! --> src/main.rs:68:1 Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 27 09:20:56.487 INFO kablam! 69 | | Oct 27 09:20:56.487 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 27 09:20:56.487 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 27 09:20:56.487 INFO kablam! ... | Oct 27 09:20:56.487 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 27 09:20:56.487 INFO kablam! 98 | | } Oct 27 09:20:56.487 INFO kablam! | |_^ Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 27 09:20:56.487 INFO kablam! Oct 27 09:20:56.487 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 27 09:20:56.487 INFO kablam! --> src/main.rs:147:9 Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 27 09:20:56.487 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.487 INFO kablam! Oct 27 09:20:56.487 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 27 09:20:56.487 INFO kablam! --> src/main.rs:148:9 Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 27 09:20:56.487 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.487 INFO kablam! Oct 27 09:20:56.487 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.487 INFO kablam! --> src/main.rs:267:9 Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 27 09:20:56.487 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.487 INFO kablam! | Oct 27 09:20:56.487 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 27 09:20:56.487 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.487 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:269:9 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:272:9 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:274:5 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 274 | o_buff.write(b"\n"); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:277:5 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 277 | o_buff.write(b"\n"); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:280:5 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 280 | o_buff.write(b"\n"); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:286:10 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^ Oct 27 09:20:56.495 INFO kablam! Oct 27 09:20:56.495 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 27 09:20:56.495 INFO kablam! --> src/main.rs:357:9 Oct 27 09:20:56.495 INFO kablam! | Oct 27 09:20:56.495 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 27 09:20:56.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.496 INFO kablam! Oct 27 09:20:56.496 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 27 09:20:56.496 INFO kablam! --> src/main.rs:387:17 Oct 27 09:20:56.496 INFO kablam! | Oct 27 09:20:56.496 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 27 09:20:56.496 INFO kablam! | ^^^^^^^^^^^^ Oct 27 09:20:56.496 INFO kablam! Oct 27 09:20:56.519 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.519 INFO kablam! --> src/main.rs:74:9 Oct 27 09:20:56.519 INFO kablam! | Oct 27 09:20:56.519 INFO kablam! 74 | let mut pair; Oct 27 09:20:56.519 INFO kablam! | ----^^^^ Oct 27 09:20:56.519 INFO kablam! | | Oct 27 09:20:56.519 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.519 INFO kablam! | Oct 27 09:20:56.519 INFO kablam! = note: #[warn(unused_mut)] on by default Oct 27 09:20:56.519 INFO kablam! Oct 27 09:20:56.519 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.519 INFO kablam! --> src/main.rs:75:9 Oct 27 09:20:56.519 INFO kablam! | Oct 27 09:20:56.519 INFO kablam! 75 | let mut strand; Oct 27 09:20:56.519 INFO kablam! | ----^^^^^^ Oct 27 09:20:56.519 INFO kablam! | | Oct 27 09:20:56.519 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.519 INFO kablam! Oct 27 09:20:56.519 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.519 INFO kablam! --> src/main.rs:76:9 Oct 27 09:20:56.519 INFO kablam! | Oct 27 09:20:56.519 INFO kablam! 76 | let mut aln_pos; Oct 27 09:20:56.519 INFO kablam! | ----^^^^^^^ Oct 27 09:20:56.519 INFO kablam! | | Oct 27 09:20:56.519 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.519 INFO kablam! Oct 27 09:20:56.547 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.547 INFO kablam! --> src/main.rs:144:9 Oct 27 09:20:56.547 INFO kablam! | Oct 27 09:20:56.547 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Oct 27 09:20:56.547 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.547 INFO kablam! | | Oct 27 09:20:56.547 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.547 INFO kablam! Oct 27 09:20:56.547 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.547 INFO kablam! --> src/main.rs:151:9 Oct 27 09:20:56.547 INFO kablam! | Oct 27 09:20:56.547 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Oct 27 09:20:56.547 INFO kablam! | ----^^^^^^^^^ Oct 27 09:20:56.547 INFO kablam! | | Oct 27 09:20:56.547 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.547 INFO kablam! Oct 27 09:20:56.563 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.563 INFO kablam! --> src/main.rs:338:9 Oct 27 09:20:56.563 INFO kablam! | Oct 27 09:20:56.563 INFO kablam! 338 | let mut need_trim:bool; Oct 27 09:20:56.563 INFO kablam! | ----^^^^^^^^^ Oct 27 09:20:56.563 INFO kablam! | | Oct 27 09:20:56.563 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.563 INFO kablam! Oct 27 09:20:56.563 INFO kablam! warning: variable does not need to be mutable Oct 27 09:20:56.563 INFO kablam! --> src/main.rs:355:9 Oct 27 09:20:56.563 INFO kablam! | Oct 27 09:20:56.563 INFO kablam! 355 | let mut chrom = 0; Oct 27 09:20:56.563 INFO kablam! | ----^^^^^ Oct 27 09:20:56.563 INFO kablam! | | Oct 27 09:20:56.563 INFO kablam! | help: remove this `mut` Oct 27 09:20:56.563 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:68:1 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Oct 27 09:20:56.575 INFO kablam! 69 | | Oct 27 09:20:56.575 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Oct 27 09:20:56.575 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Oct 27 09:20:56.575 INFO kablam! ... | Oct 27 09:20:56.575 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Oct 27 09:20:56.575 INFO kablam! 98 | | } Oct 27 09:20:56.575 INFO kablam! | |_^ Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! = note: #[warn(non_snake_case)] on by default Oct 27 09:20:56.575 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:147:9 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Oct 27 09:20:56.575 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.575 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:148:9 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Oct 27 09:20:56.575 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.575 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:267:9 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 267 | o_buff.write(&member_record.2); Oct 27 09:20:56.575 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! = note: #[warn(unused_must_use)] on by default Oct 27 09:20:56.575 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.575 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:269:9 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 269 | o_buff.write(&member_record.0); Oct 27 09:20:56.575 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.575 INFO kablam! Oct 27 09:20:56.575 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.575 INFO kablam! --> src/main.rs:272:9 Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.575 INFO kablam! 272 | o_buff.write(&real_qual_temp); Oct 27 09:20:56.575 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.575 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:274:5 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 274 | o_buff.write(b"\n"); Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:277:5 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 277 | o_buff.write(b"\n"); Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: unused `std::result::Result` that must be used Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:280:5 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 280 | o_buff.write(b"\n"); Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:286:10 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:357:9 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.576 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Oct 27 09:20:56.576 INFO kablam! --> src/main.rs:387:17 Oct 27 09:20:56.576 INFO kablam! | Oct 27 09:20:56.576 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Oct 27 09:20:56.576 INFO kablam! | ^^^^^^^^^^^^ Oct 27 09:20:56.576 INFO kablam! Oct 27 09:20:56.655 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 40.44s Oct 27 09:20:56.683 INFO kablam! su: No module specific data is present Oct 27 09:20:57.628 INFO running `"docker" "rm" "-f" "da19df2426b4a72e155f2a587d4eb870081b3137735a31e1c551a013bc8bcaab"` Oct 27 09:20:57.930 INFO blam! da19df2426b4a72e155f2a587d4eb870081b3137735a31e1c551a013bc8bcaab