Sep 21 03:59:57.807 INFO checking rust-htslib-0.21.0 against try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6 for pr-54394 Sep 21 03:59:57.807 INFO running: cargo +f1a3f05968ed2a674e09b6efa4ad9df90816e2b6-alt check --frozen --all --all-targets Sep 21 03:59:57.807 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-0/pr-54394/try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54394/worker-0/try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +f1a3f05968ed2a674e09b6efa4ad9df90816e2b6-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 21 03:59:57.939 INFO blam! 91c95bddcd12e96f3c23efa6a97448d07353a80ec94a8edb63355c085adf6da7 Sep 21 03:59:57.941 INFO running `"docker" "start" "-a" "91c95bddcd12e96f3c23efa6a97448d07353a80ec94a8edb63355c085adf6da7"` Sep 21 03:59:58.630 INFO kablam! usermod: no changes Sep 21 03:59:58.879 INFO kablam! Compiling bindgen v0.36.1 Sep 21 03:59:58.890 INFO kablam! Checking linear-map v1.2.0 Sep 21 03:59:58.890 INFO kablam! Checking ieee754 v0.2.2 Sep 21 03:59:58.898 INFO kablam! Checking custom_derive v0.1.7 Sep 21 03:59:58.898 INFO kablam! Compiling clang-sys v0.22.0 Sep 21 03:59:58.898 INFO kablam! Compiling fs-utils v1.1.0 Sep 21 03:59:58.910 INFO kablam! Checking bio-types v0.3.0 Sep 21 04:00:26.178 INFO kablam! Compiling rust-htslib v0.21.0 (/source) Sep 21 04:00:47.679 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (/source)` Sep 21 04:00:47.679 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-aa0d34dbdf7484a2/build-script-build` (exit code: 101) Sep 21 04:00:47.679 INFO kablam! --- stdout Sep 21 04:00:47.679 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h Sep 21 04:00:47.679 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h Sep 21 04:00:47.679 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h Sep 21 04:00:47.679 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h Sep 21 04:00:47.679 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kfunc.o kfunc.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o knetfile.o knetfile.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kstring.o kstring.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bcf_sr_sort.o bcf_sr_sort.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bgzf.o bgzf.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o errmod.o errmod.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o faidx.o faidx.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile.o hfile.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile_net.o hfile_net.c Sep 21 04:00:47.679 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts.o hts.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts_os.o hts_os.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o md5.o md5.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o multipart.o multipart.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o probaln.o probaln.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o realn.o realn.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o regidx.o regidx.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o sam.o sam.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o synced_bcf_reader.o synced_bcf_reader.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf_sweep.o vcf_sweep.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o tbx.o tbx.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o textutils.o textutils.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o thread_pool.o thread_pool.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf.o vcf.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcfutils.o vcfutils.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_codecs.o cram/cram_codecs.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_decode.o cram/cram_decode.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_encode.o cram/cram_encode.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_external.o cram/cram_external.c Sep 21 04:00:47.679 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_index.o cram/cram_index.c Sep 21 04:00:47.680 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_io.o cram/cram_io.c Sep 21 04:00:47.680 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed Sep 21 04:00:47.680 INFO kablam! Sep 21 04:00:47.680 INFO kablam! --- stderr Sep 21 04:00:47.680 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory Sep 21 04:00:47.680 INFO kablam! compilation terminated. Sep 21 04:00:47.680 INFO kablam! make: *** [cram/cram_io.o] Error 1 Sep 21 04:00:47.680 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9 Sep 21 04:00:47.680 INFO kablam! stack backtrace: Sep 21 04:00:47.680 INFO kablam! 0: 0x5605419d825e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h6f03e345e7220f71 Sep 21 04:00:47.680 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 21 04:00:47.680 INFO kablam! 1: 0x5605419c9236 - std::sys_common::backtrace::print::h41236bee57dc6f2f Sep 21 04:00:47.680 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 21 04:00:47.680 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 21 04:00:47.680 INFO kablam! 2: 0x5605419c75bd - std::panicking::default_hook::{{closure}}::hdccdd5cf822554bd Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:211 Sep 21 04:00:47.680 INFO kablam! 3: 0x5605419c7330 - std::panicking::default_hook::h51e0996e64af4435 Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:227 Sep 21 04:00:47.680 INFO kablam! 4: 0x5605419c7c2c - std::panicking::rust_panic_with_hook::hbba83c9bc00efd25 Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:477 Sep 21 04:00:47.680 INFO kablam! 5: 0x56054180123f - std::panicking::begin_panic::hb280737060fc5e4f Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:411 Sep 21 04:00:47.680 INFO kablam! 6: 0x5605413e61d4 - build_script_build::main::h9a37afc82b68bfa6 Sep 21 04:00:47.680 INFO kablam! at /source/build.rs:59 Sep 21 04:00:47.680 INFO kablam! 7: 0x5605413e72ff - std::rt::lang_start::{{closure}}::h160abc85121fc553 Sep 21 04:00:47.680 INFO kablam! at libstd/rt.rs:74 Sep 21 04:00:47.680 INFO kablam! 8: 0x5605419c76c2 - std::panicking::try::do_call::h5d32e7529efe730f Sep 21 04:00:47.680 INFO kablam! at libstd/rt.rs:59 Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:310 Sep 21 04:00:47.680 INFO kablam! 9: 0x5605419eacc9 - __rust_maybe_catch_panic Sep 21 04:00:47.680 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 21 04:00:47.680 INFO kablam! 10: 0x5605419d3b45 - std::rt::lang_start_internal::hc5e2e4826ae19193 Sep 21 04:00:47.680 INFO kablam! at libstd/panicking.rs:289 Sep 21 04:00:47.680 INFO kablam! at libstd/panic.rs:392 Sep 21 04:00:47.680 INFO kablam! at libstd/rt.rs:58 Sep 21 04:00:47.680 INFO kablam! 11: 0x5605413e72d7 - std::rt::lang_start::ha1935fbbff3f4a0d Sep 21 04:00:47.680 INFO kablam! at libstd/rt.rs:74 Sep 21 04:00:47.680 INFO kablam! 12: 0x5605413e6699 - main Sep 21 04:00:47.680 INFO kablam! 13: 0x7fc64626b82f - __libc_start_main Sep 21 04:00:47.680 INFO kablam! 14: 0x5605413e5888 - _start Sep 21 04:00:47.680 INFO kablam! 15: 0x0 - Sep 21 04:00:47.680 INFO kablam! Sep 21 04:00:47.680 INFO kablam! su: No module specific data is present Sep 21 04:00:48.583 INFO running `"docker" "rm" "-f" "91c95bddcd12e96f3c23efa6a97448d07353a80ec94a8edb63355c085adf6da7"` Sep 21 04:00:48.664 INFO blam! 91c95bddcd12e96f3c23efa6a97448d07353a80ec94a8edb63355c085adf6da7