Sep 21 12:17:01.557 INFO checking chemfiles-sys-0.8.0 against try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6 for pr-54394 Sep 21 12:17:01.557 INFO running: cargo +f1a3f05968ed2a674e09b6efa4ad9df90816e2b6-alt check --frozen --all --all-targets Sep 21 12:17:01.557 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-1/pr-54394/try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54394/worker-1/try#f1a3f05968ed2a674e09b6efa4ad9df90816e2b6:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +f1a3f05968ed2a674e09b6efa4ad9df90816e2b6-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 21 12:17:01.691 INFO blam! 1f3aec3721612b46c0cef559c377810f6e1e14b2b15239d204085782616393e8 Sep 21 12:17:01.696 INFO running `"docker" "start" "-a" "1f3aec3721612b46c0cef559c377810f6e1e14b2b15239d204085782616393e8"` Sep 21 12:17:02.468 INFO kablam! usermod: no changes Sep 21 12:17:02.502 INFO kablam! Compiling chemfiles-sys v0.8.0 (/source) Sep 21 12:18:06.919 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.8.0 (/source)` Sep 21 12:18:06.919 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-eee62471b0f7d20c/build-script-build` (exit code: 101) Sep 21 12:18:06.919 INFO kablam! --- stdout Sep 21 12:18:06.919 INFO kablam! running: "cmake" "/source/." "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-fd8b82a5b2c231cc/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" Sep 21 12:18:06.919 INFO kablam! -- The C compiler identification is GNU 5.4.0 Sep 21 12:18:06.919 INFO kablam! -- The CXX compiler identification is GNU 5.4.0 Sep 21 12:18:06.919 INFO kablam! -- Check for working C compiler: /usr/bin/cc Sep 21 12:18:06.919 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works Sep 21 12:18:06.919 INFO kablam! -- Detecting C compiler ABI info Sep 21 12:18:06.919 INFO kablam! -- Detecting C compiler ABI info - done Sep 21 12:18:06.919 INFO kablam! -- Detecting C compile features Sep 21 12:18:06.919 INFO kablam! -- Detecting C compile features - done Sep 21 12:18:06.919 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ Sep 21 12:18:06.919 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works Sep 21 12:18:06.919 INFO kablam! -- Detecting CXX compiler ABI info Sep 21 12:18:06.919 INFO kablam! -- Detecting CXX compiler ABI info - done Sep 21 12:18:06.919 INFO kablam! -- Detecting CXX compile features Sep 21 12:18:06.919 INFO kablam! -- Detecting CXX compile features - done Sep 21 12:18:06.919 INFO kablam! -- Unpacking fmt sources Sep 21 12:18:06.919 INFO kablam! -- Unpacking toml11 sources Sep 21 12:18:06.919 INFO kablam! -- Unpacking netcdf sources Sep 21 12:18:06.919 INFO kablam! -- Unpacking tng sources Sep 21 12:18:06.919 INFO kablam! -- Check if the system is big endian Sep 21 12:18:06.919 INFO kablam! -- Searching 16 bit integer Sep 21 12:18:06.919 INFO kablam! -- Using unsigned short Sep 21 12:18:06.919 INFO kablam! -- Check if the system is big endian - little endian Sep 21 12:18:06.919 INFO kablam! -- Unpacking molfiles sources Sep 21 12:18:06.919 INFO kablam! -- Configuring done Sep 21 12:18:06.919 INFO kablam! -- Generating done Sep 21 12:18:06.919 INFO kablam! -- Build files have been written to: /target/debug/build/chemfiles-sys-fd8b82a5b2c231cc/out/build Sep 21 12:18:06.919 INFO kablam! running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target molfiles Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target tng_io Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target fmt-object Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target netcdf Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target tng_io_zlib Sep 21 12:18:06.919 INFO kablam! [ 1%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o Sep 21 12:18:06.919 INFO kablam! [ 2%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o Sep 21 12:18:06.919 INFO kablam! [ 3%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/liblib/nc_initialize.c.o Sep 21 12:18:06.919 INFO kablam! Scanning dependencies of target chemfiles_objects Sep 21 12:18:06.919 INFO kablam! 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[ 97%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/expr.cpp.o Sep 21 12:18:06.923 INFO kablam! [ 98%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/lexer.cpp.o Sep 21 12:18:06.923 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:686: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o' failed Sep 21 12:18:06.923 INFO kablam! CMakeFiles/Makefile2:90: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/all' failed Sep 21 12:18:06.923 INFO kablam! Makefile:127: recipe for target 'all' failed Sep 21 12:18:06.923 INFO kablam! Sep 21 12:18:06.923 INFO kablam! --- stderr Sep 21 12:18:06.923 INFO kablam! c++: internal compiler error: Killed (program cc1plus) Sep 21 12:18:06.923 INFO kablam! Please submit a full bug report, Sep 21 12:18:06.923 INFO kablam! with preprocessed source if appropriate. Sep 21 12:18:06.923 INFO kablam! See for instructions. Sep 21 12:18:06.923 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o] Error 4 Sep 21 12:18:06.923 INFO kablam! make[2]: *** Waiting for unfinished jobs.... Sep 21 12:18:06.923 INFO kablam! make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 Sep 21 12:18:06.923 INFO kablam! make: *** [all] Error 2 Sep 21 12:18:06.923 INFO kablam! thread 'main' panicked at ' Sep 21 12:18:06.923 INFO kablam! command did not execute successfully, got: exit code: 2 Sep 21 12:18:06.923 INFO kablam! Sep 21 12:18:06.923 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776:5 Sep 21 12:18:06.923 INFO kablam! stack backtrace: Sep 21 12:18:06.923 INFO kablam! 0: 0x55ed8e9372de - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h6f03e345e7220f71 Sep 21 12:18:06.923 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 21 12:18:06.923 INFO kablam! 1: 0x55ed8e9290c6 - std::sys_common::backtrace::print::h41236bee57dc6f2f Sep 21 12:18:06.923 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 21 12:18:06.923 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 21 12:18:06.923 INFO kablam! 2: 0x55ed8e9279cd - std::panicking::default_hook::{{closure}}::hdccdd5cf822554bd Sep 21 12:18:06.923 INFO kablam! at libstd/panicking.rs:211 Sep 21 12:18:06.923 INFO kablam! 3: 0x55ed8e927740 - std::panicking::default_hook::h51e0996e64af4435 Sep 21 12:18:06.923 INFO kablam! at libstd/panicking.rs:227 Sep 21 12:18:06.923 INFO kablam! 4: 0x55ed8e927fdc - std::panicking::rust_panic_with_hook::hbba83c9bc00efd25 Sep 21 12:18:06.923 INFO kablam! at libstd/panicking.rs:477 Sep 21 12:18:06.923 INFO kablam! 5: 0x55ed8e927bd9 - std::panicking::continue_panic_fmt::ha190502cef7433c2 Sep 21 12:18:06.923 INFO kablam! at libstd/panicking.rs:391 Sep 21 12:18:06.925 INFO kablam! 6: 0x55ed8e927b3d - std::panicking::begin_panic_fmt::hb55432431a8c3fd8 Sep 21 12:18:06.925 INFO kablam! at libstd/panicking.rs:346 Sep 21 12:18:06.925 INFO kablam! 7: 0x55ed8e8bbcc1 - cmake::fail::he20aa2f0fc5c2871 Sep 21 12:18:06.925 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776 Sep 21 12:18:06.925 INFO kablam! 8: 0x55ed8e8bb5fa - cmake::run::h15bd02b0f9259ddc Sep 21 12:18:06.925 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:757 Sep 21 12:18:06.925 INFO kablam! 9: 0x55ed8e8b7d9f - cmake::Config::build::ha855460ffe676a0a Sep 21 12:18:06.925 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:669 Sep 21 12:18:06.925 INFO kablam! 10: 0x55ed8e8b2cae - build_script_build::build_chemfiles::hbfe4638ffc9d5000 Sep 21 12:18:06.925 INFO kablam! at /source/build.rs:18 Sep 21 12:18:06.925 INFO kablam! 11: 0x55ed8e8b2add - build_script_build::main::he2c2f5cd44bc648c Sep 21 12:18:06.925 INFO kablam! at /source/build.rs:8 Sep 21 12:18:06.925 INFO kablam! 12: 0x55ed8e8b3a7f - std::rt::lang_start::{{closure}}::hd86ee9f2f3cb2fa3 Sep 21 12:18:06.925 INFO kablam! at libstd/rt.rs:74 Sep 21 12:18:06.925 INFO kablam! 13: 0x55ed8e927a72 - std::panicking::try::do_call::h5d32e7529efe730f Sep 21 12:18:06.925 INFO kablam! at libstd/rt.rs:59 Sep 21 12:18:06.925 INFO kablam! at libstd/panicking.rs:310 Sep 21 12:18:06.925 INFO kablam! 14: 0x55ed8e949c79 - __rust_maybe_catch_panic Sep 21 12:18:06.925 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 21 12:18:06.925 INFO kablam! 15: 0x55ed8e933225 - std::rt::lang_start_internal::hc5e2e4826ae19193 Sep 21 12:18:06.925 INFO kablam! at libstd/panicking.rs:289 Sep 21 12:18:06.925 INFO kablam! at libstd/panic.rs:392 Sep 21 12:18:06.925 INFO kablam! at libstd/rt.rs:58 Sep 21 12:18:06.925 INFO kablam! 16: 0x55ed8e8b3a57 - std::rt::lang_start::hf3e9637fef264702 Sep 21 12:18:06.925 INFO kablam! at libstd/rt.rs:74 Sep 21 12:18:06.925 INFO kablam! 17: 0x55ed8e8b3659 - main Sep 21 12:18:06.925 INFO kablam! 18: 0x7f8e6f24c82f - __libc_start_main Sep 21 12:18:06.925 INFO kablam! 19: 0x55ed8e8b29c8 - _start Sep 21 12:18:06.925 INFO kablam! 20: 0x0 - Sep 21 12:18:06.925 INFO kablam! Sep 21 12:18:06.925 INFO kablam! su: No module specific data is present Sep 21 12:18:08.058 INFO running `"docker" "rm" "-f" "1f3aec3721612b46c0cef559c377810f6e1e14b2b15239d204085782616393e8"` Sep 21 12:18:08.204 INFO blam! 1f3aec3721612b46c0cef559c377810f6e1e14b2b15239d204085782616393e8