Sep 21 04:00:04.916 INFO checking rust-htslib-0.21.0 against master#f7f4c500b46603386e940f116b469c7adc043a6d for pr-54394 Sep 21 04:00:04.916 INFO running: cargo +f7f4c500b46603386e940f116b469c7adc043a6d-alt check --frozen --all --all-targets Sep 21 04:00:04.916 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-7/pr-54394/master#f7f4c500b46603386e940f116b469c7adc043a6d:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54394/worker-7/master#f7f4c500b46603386e940f116b469c7adc043a6d:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +f7f4c500b46603386e940f116b469c7adc043a6d-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 21 04:00:05.159 INFO blam! 42d930c3d450d71df9d07cd732f0ed2d2b91940161f49cbde5fd59199d86195f Sep 21 04:00:05.161 INFO running `"docker" "start" "-a" "42d930c3d450d71df9d07cd732f0ed2d2b91940161f49cbde5fd59199d86195f"` Sep 21 04:00:07.030 INFO kablam! usermod: no changes Sep 21 04:00:07.370 INFO kablam! Checking ieee754 v0.2.2 Sep 21 04:00:07.371 INFO kablam! Checking custom_derive v0.1.7 Sep 21 04:00:07.375 INFO kablam! Checking linear-map v1.2.0 Sep 21 04:00:07.398 INFO kablam! Compiling fs-utils v1.1.0 Sep 21 04:00:07.403 INFO kablam! Compiling newtype_derive v0.1.6 Sep 21 04:00:07.404 INFO kablam! Checking bio-types v0.3.0 Sep 21 04:00:09.672 INFO kablam! Compiling rust-htslib v0.21.0 (/source) Sep 21 04:00:33.701 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (/source)` Sep 21 04:00:33.701 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-36c483163edd1cc7/build-script-build` (exit code: 101) Sep 21 04:00:33.701 INFO kablam! --- stdout Sep 21 04:00:33.701 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h Sep 21 04:00:33.701 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h Sep 21 04:00:33.701 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h Sep 21 04:00:33.701 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h Sep 21 04:00:33.702 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kfunc.o kfunc.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o knetfile.o knetfile.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kstring.o kstring.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bcf_sr_sort.o bcf_sr_sort.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bgzf.o bgzf.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o errmod.o errmod.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o faidx.o faidx.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile.o hfile.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile_net.o hfile_net.c Sep 21 04:00:33.702 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts.o hts.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts_os.o hts_os.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o md5.o md5.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o multipart.o multipart.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o probaln.o probaln.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o realn.o realn.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o regidx.o regidx.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o sam.o sam.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o synced_bcf_reader.o synced_bcf_reader.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf_sweep.o vcf_sweep.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o tbx.o tbx.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o textutils.o textutils.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o thread_pool.o thread_pool.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf.o vcf.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcfutils.o vcfutils.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_codecs.o cram/cram_codecs.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_decode.o cram/cram_decode.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_encode.o cram/cram_encode.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_external.o cram/cram_external.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_index.o cram/cram_index.c Sep 21 04:00:33.702 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_io.o cram/cram_io.c Sep 21 04:00:33.702 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed Sep 21 04:00:33.702 INFO kablam! Sep 21 04:00:33.702 INFO kablam! --- stderr Sep 21 04:00:33.702 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory Sep 21 04:00:33.702 INFO kablam! compilation terminated. Sep 21 04:00:33.702 INFO kablam! make: *** [cram/cram_io.o] Error 1 Sep 21 04:00:33.702 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9 Sep 21 04:00:33.702 INFO kablam! stack backtrace: Sep 21 04:00:33.702 INFO kablam! 0: 0x55e61f3a9a1e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h8364381a6315579e Sep 21 04:00:33.702 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 21 04:00:33.702 INFO kablam! 1: 0x55e61f39a946 - std::sys_common::backtrace::print::hbf206e386958691c Sep 21 04:00:33.702 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 21 04:00:33.702 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 21 04:00:33.702 INFO kablam! 2: 0x55e61f398d1d - std::panicking::default_hook::{{closure}}::hdfbe128a3d24757d Sep 21 04:00:33.702 INFO kablam! at libstd/panicking.rs:211 Sep 21 04:00:33.702 INFO kablam! 3: 0x55e61f398a90 - std::panicking::default_hook::h7fe1685957f6b205 Sep 21 04:00:33.702 INFO kablam! at libstd/panicking.rs:227 Sep 21 04:00:33.702 INFO kablam! 4: 0x55e61f39938c - std::panicking::rust_panic_with_hook::h67471ab114b25df3 Sep 21 04:00:33.702 INFO kablam! at libstd/panicking.rs:477 Sep 21 04:00:33.702 INFO kablam! 5: 0x55e61f1b1def - std::panicking::begin_panic::hb983f05c87490ca1 Sep 21 04:00:33.702 INFO kablam! at libstd/panicking.rs:411 Sep 21 04:00:33.702 INFO kablam! 6: 0x55e61edb6294 - build_script_build::main::h69133c1928d3f3ef Sep 21 04:00:33.702 INFO kablam! at /source/build.rs:59 Sep 21 04:00:33.702 INFO kablam! 7: 0x55e61edb73bf - std::rt::lang_start::{{closure}}::h1a6ea3b995decd6b Sep 21 04:00:33.702 INFO kablam! at libstd/rt.rs:74 Sep 21 04:00:33.702 INFO kablam! 8: 0x55e61f398e22 - std::panicking::try::do_call::hba3cdd40b2f76c63 Sep 21 04:00:33.702 INFO kablam! at libstd/rt.rs:59 Sep 21 04:00:33.702 INFO kablam! at libstd/panicking.rs:310 Sep 21 04:00:33.702 INFO kablam! 9: 0x55e61f3bc149 - __rust_maybe_catch_panic Sep 21 04:00:33.702 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 21 04:00:33.703 INFO kablam! 10: 0x55e61f3a5305 - std::rt::lang_start_internal::ha318b532168af217 Sep 21 04:00:33.703 INFO kablam! at libstd/panicking.rs:289 Sep 21 04:00:33.703 INFO kablam! at libstd/panic.rs:392 Sep 21 04:00:33.703 INFO kablam! at libstd/rt.rs:58 Sep 21 04:00:33.703 INFO kablam! 11: 0x55e61edb7397 - std::rt::lang_start::h342b330b2f126c0e Sep 21 04:00:33.703 INFO kablam! at libstd/rt.rs:74 Sep 21 04:00:33.703 INFO kablam! 12: 0x55e61edb6759 - main Sep 21 04:00:33.703 INFO kablam! 13: 0x7fb7c146882f - __libc_start_main Sep 21 04:00:33.703 INFO kablam! 14: 0x55e61edb5948 - _start Sep 21 04:00:33.703 INFO kablam! 15: 0x0 - Sep 21 04:00:33.703 INFO kablam! Sep 21 04:00:33.703 INFO kablam! su: No module specific data is present Sep 21 04:00:34.433 INFO running `"docker" "rm" "-f" "42d930c3d450d71df9d07cd732f0ed2d2b91940161f49cbde5fd59199d86195f"` Sep 21 04:00:34.614 INFO blam! 42d930c3d450d71df9d07cd732f0ed2d2b91940161f49cbde5fd59199d86195f