Sep 21 12:17:03.804 INFO checking chemfiles-sys-0.5.0 against master#f7f4c500b46603386e940f116b469c7adc043a6d for pr-54394 Sep 21 12:17:03.804 INFO running: cargo +f7f4c500b46603386e940f116b469c7adc043a6d-alt check --frozen --all --all-targets Sep 21 12:17:03.805 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-2/pr-54394/master#f7f4c500b46603386e940f116b469c7adc043a6d:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54394/worker-2/master#f7f4c500b46603386e940f116b469c7adc043a6d:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +f7f4c500b46603386e940f116b469c7adc043a6d-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 21 12:17:04.010 INFO blam! 65d4c4e4197057b9131cfb8eaf6845afff3f2ebbbcc23ed544fdfb4974e9908f Sep 21 12:17:04.012 INFO running `"docker" "start" "-a" "65d4c4e4197057b9131cfb8eaf6845afff3f2ebbbcc23ed544fdfb4974e9908f"` Sep 21 12:17:04.656 INFO kablam! usermod: no changes Sep 21 12:17:04.769 INFO kablam! Compiling chemfiles-sys v0.5.0 (/source) Sep 21 12:17:10.395 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.5.0 (/source)` Sep 21 12:17:10.395 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-d3729b33f8fcc3fc/build-script-build` (exit code: 101) Sep 21 12:17:10.395 INFO kablam! --- stdout Sep 21 12:17:10.395 INFO kablam! running: "cmake" "/source/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-5c5ecb2cf92b948a/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" Sep 21 12:17:10.395 INFO kablam! -- The C compiler identification is GNU 5.4.0 Sep 21 12:17:10.395 INFO kablam! -- The CXX compiler identification is GNU 5.4.0 Sep 21 12:17:10.395 INFO kablam! -- Check for working C compiler: /usr/bin/cc Sep 21 12:17:10.395 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works Sep 21 12:17:10.395 INFO kablam! -- Detecting C compiler ABI info Sep 21 12:17:10.395 INFO kablam! -- Detecting C compiler ABI info - done Sep 21 12:17:10.395 INFO kablam! -- Detecting C compile features Sep 21 12:17:10.395 INFO kablam! -- Detecting C compile features - done Sep 21 12:17:10.395 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ Sep 21 12:17:10.395 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works Sep 21 12:17:10.395 INFO kablam! -- Detecting CXX compiler ABI info Sep 21 12:17:10.395 INFO kablam! -- Detecting CXX compiler ABI info - done Sep 21 12:17:10.395 INFO kablam! -- Detecting CXX compile features Sep 21 12:17:10.395 INFO kablam! -- Detecting CXX compile features - done Sep 21 12:17:10.395 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11 Sep 21 12:17:10.395 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11 - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X Sep 21 12:17:10.395 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wall Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wall - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion Sep 21 12:17:10.395 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion - Success Sep 21 12:17:10.395 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression Sep 21 12:17:10.396 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression Sep 21 12:17:10.396 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression - Failed Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99 Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99 - Success Sep 21 12:17:10.396 INFO kablam! -- Found NetCDF: /usr/lib/x86_64-linux-gnu/libnetcdf.so Sep 21 12:17:10.396 INFO kablam! -- Found NetCDF library. Consider activating the associated format with -DENABLE_NETCDF=ON Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR Sep 21 12:17:10.396 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success Sep 21 12:17:10.396 INFO kablam! -- Configuring incomplete, errors occurred! Sep 21 12:17:10.396 INFO kablam! See also "/target/debug/build/chemfiles-sys-5c5ecb2cf92b948a/out/build/CMakeFiles/CMakeOutput.log". Sep 21 12:17:10.396 INFO kablam! See also "/target/debug/build/chemfiles-sys-5c5ecb2cf92b948a/out/build/CMakeFiles/CMakeError.log". Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! --- stderr Sep 21 12:17:10.396 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/exports.hpp.tmp Sep 21 12:17:10.396 INFO kablam! CMake Error: : System Error: Read-only file system Sep 21 12:17:10.396 INFO kablam! CMake Error at /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:362 (configure_file): Sep 21 12:17:10.396 INFO kablam! configure_file Problem configuring file Sep 21 12:17:10.396 INFO kablam! Call Stack (most recent call first): Sep 21 12:17:10.396 INFO kablam! /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:378 (_do_generate_export_header) Sep 21 12:17:10.396 INFO kablam! chemfiles/CMakeLists.txt:71 (generate_export_header) Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/config.hpp.tmp Sep 21 12:17:10.396 INFO kablam! CMake Error: : System Error: Read-only file system Sep 21 12:17:10.396 INFO kablam! CMake Error at chemfiles/CMakeLists.txt:77 (configure_file): Sep 21 12:17:10.396 INFO kablam! configure_file Problem configuring file Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! CMake Warning (dev) in CMakeLists.txt: Sep 21 12:17:10.396 INFO kablam! No cmake_minimum_required command is present. A line of code such as Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! cmake_minimum_required(VERSION 3.5) Sep 21 12:17:10.396 INFO kablam! Sep 21 12:17:10.396 INFO kablam! should be added at the top of the file. The version specified may be lower Sep 21 12:17:10.397 INFO kablam! if you wish to support older CMake versions for this project. For more Sep 21 12:17:10.397 INFO kablam! information run "cmake --help-policy CMP0000". Sep 21 12:17:10.397 INFO kablam! This warning is for project developers. Use -Wno-dev to suppress it. Sep 21 12:17:10.397 INFO kablam! Sep 21 12:17:10.397 INFO kablam! thread 'main' panicked at ' Sep 21 12:17:10.397 INFO kablam! command did not execute successfully, got: exit code: 1 Sep 21 12:17:10.397 INFO kablam! Sep 21 12:17:10.397 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776:5 Sep 21 12:17:10.397 INFO kablam! stack backtrace: Sep 21 12:17:10.397 INFO kablam! 0: 0x560bb1ae235e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h8364381a6315579e Sep 21 12:17:10.397 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 21 12:17:10.397 INFO kablam! 1: 0x560bb1ad4096 - std::sys_common::backtrace::print::hbf206e386958691c Sep 21 12:17:10.397 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 21 12:17:10.397 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 21 12:17:10.397 INFO kablam! 2: 0x560bb1ad29ed - std::panicking::default_hook::{{closure}}::hdfbe128a3d24757d Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:211 Sep 21 12:17:10.397 INFO kablam! 3: 0x560bb1ad2760 - std::panicking::default_hook::h7fe1685957f6b205 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:227 Sep 21 12:17:10.397 INFO kablam! 4: 0x560bb1ad2ffc - std::panicking::rust_panic_with_hook::h67471ab114b25df3 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:477 Sep 21 12:17:10.397 INFO kablam! 5: 0x560bb1ad2bf9 - std::panicking::continue_panic_fmt::hccb547c7e8ba6430 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:391 Sep 21 12:17:10.397 INFO kablam! 6: 0x560bb1ad2b5d - std::panicking::begin_panic_fmt::h1449a246d8077561 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:346 Sep 21 12:17:10.397 INFO kablam! 7: 0x560bb1a66d31 - cmake::fail::h8166a7452a4ea705 Sep 21 12:17:10.397 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776 Sep 21 12:17:10.397 INFO kablam! 8: 0x560bb1a6666a - cmake::run::h618e53374a5219fa Sep 21 12:17:10.397 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:757 Sep 21 12:17:10.397 INFO kablam! 9: 0x560bb1a62259 - cmake::Config::build::hc9318462e9c1a4f2 Sep 21 12:17:10.397 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:609 Sep 21 12:17:10.397 INFO kablam! 10: 0x560bb1a5f2f9 - build_script_build::main::hd58f69c0ceeda19d Sep 21 12:17:10.397 INFO kablam! at /source/build.rs:18 Sep 21 12:17:10.397 INFO kablam! 11: 0x560bb1a5ed8f - std::rt::lang_start::{{closure}}::hbfe64975fec9fa79 Sep 21 12:17:10.397 INFO kablam! at libstd/rt.rs:74 Sep 21 12:17:10.397 INFO kablam! 12: 0x560bb1ad2a92 - std::panicking::try::do_call::hba3cdd40b2f76c63 Sep 21 12:17:10.397 INFO kablam! at libstd/rt.rs:59 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:310 Sep 21 12:17:10.397 INFO kablam! 13: 0x560bb1af49b9 - __rust_maybe_catch_panic Sep 21 12:17:10.397 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 21 12:17:10.397 INFO kablam! 14: 0x560bb1ade2a5 - std::rt::lang_start_internal::ha318b532168af217 Sep 21 12:17:10.397 INFO kablam! at libstd/panicking.rs:289 Sep 21 12:17:10.397 INFO kablam! at libstd/panic.rs:392 Sep 21 12:17:10.397 INFO kablam! at libstd/rt.rs:58 Sep 21 12:17:10.397 INFO kablam! 15: 0x560bb1a5ed67 - std::rt::lang_start::ha0c6829ce41a97e0 Sep 21 12:17:10.397 INFO kablam! at libstd/rt.rs:74 Sep 21 12:17:10.397 INFO kablam! 16: 0x560bb1a5fc29 - main Sep 21 12:17:10.397 INFO kablam! 17: 0x7f2172f7582f - __libc_start_main Sep 21 12:17:10.397 INFO kablam! 18: 0x560bb1a5d9c8 - _start Sep 21 12:17:10.397 INFO kablam! 19: 0x0 - Sep 21 12:17:10.397 INFO kablam! Sep 21 12:17:10.397 INFO kablam! su: No module specific data is present Sep 21 12:17:10.941 INFO running `"docker" "rm" "-f" "65d4c4e4197057b9131cfb8eaf6845afff3f2ebbbcc23ed544fdfb4974e9908f"` Sep 21 12:17:11.038 INFO blam! 65d4c4e4197057b9131cfb8eaf6845afff3f2ebbbcc23ed544fdfb4974e9908f