Sep 19 21:08:48.091 INFO checking rust-htslib-0.21.0 against try#135b4cd023a753409d01e43b0f23d22a899feeeb for pr-54352 Sep 19 21:08:48.091 INFO running: cargo +135b4cd023a753409d01e43b0f23d22a899feeeb-alt check --frozen --all --all-targets Sep 19 21:08:48.091 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-6/pr-54352/try#135b4cd023a753409d01e43b0f23d22a899feeeb:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54352/worker-6/try#135b4cd023a753409d01e43b0f23d22a899feeeb:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +135b4cd023a753409d01e43b0f23d22a899feeeb-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 19 21:08:48.336 INFO blam! a4d1e4f9b6694754c11761c29879bb16fdd8b7fcbd6b85ebfa24b86dfbc03643 Sep 19 21:08:48.338 INFO running `"docker" "start" "-a" "a4d1e4f9b6694754c11761c29879bb16fdd8b7fcbd6b85ebfa24b86dfbc03643"` Sep 19 21:08:49.799 INFO kablam! usermod: no changes Sep 19 21:08:50.077 INFO kablam! Compiling bindgen v0.36.1 Sep 19 21:08:50.110 INFO kablam! Checking linear-map v1.2.0 Sep 19 21:08:50.110 INFO kablam! Checking ieee754 v0.2.2 Sep 19 21:08:50.114 INFO kablam! Compiling clang-sys v0.22.0 Sep 19 21:08:50.118 INFO kablam! Compiling fs-utils v1.1.0 Sep 19 21:08:50.118 INFO kablam! Checking bio-types v0.3.0 Sep 19 21:09:22.778 INFO kablam! Compiling rust-htslib v0.21.0 (/source) Sep 19 21:09:44.872 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (/source)` Sep 19 21:09:44.872 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-3d1a8abee2480cd3/build-script-build` (exit code: 101) Sep 19 21:09:44.872 INFO kablam! --- stdout Sep 19 21:09:44.872 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h Sep 19 21:09:44.872 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h Sep 19 21:09:44.872 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h Sep 19 21:09:44.872 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h Sep 19 21:09:44.872 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kfunc.o kfunc.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o knetfile.o knetfile.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kstring.o kstring.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bcf_sr_sort.o bcf_sr_sort.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bgzf.o bgzf.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o errmod.o errmod.c Sep 19 21:09:44.872 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o faidx.o faidx.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile.o hfile.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile_net.o hfile_net.c Sep 19 21:09:44.873 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts.o hts.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts_os.o hts_os.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o md5.o md5.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o multipart.o multipart.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o probaln.o probaln.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o realn.o realn.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o regidx.o regidx.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o sam.o sam.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o synced_bcf_reader.o synced_bcf_reader.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf_sweep.o vcf_sweep.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o tbx.o tbx.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o textutils.o textutils.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o thread_pool.o thread_pool.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf.o vcf.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcfutils.o vcfutils.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_codecs.o cram/cram_codecs.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_decode.o cram/cram_decode.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_encode.o cram/cram_encode.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_external.o cram/cram_external.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_index.o cram/cram_index.c Sep 19 21:09:44.873 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_io.o cram/cram_io.c Sep 19 21:09:44.873 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed Sep 19 21:09:44.873 INFO kablam! Sep 19 21:09:44.873 INFO kablam! --- stderr Sep 19 21:09:44.873 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory Sep 19 21:09:44.873 INFO kablam! compilation terminated. Sep 19 21:09:44.873 INFO kablam! make: *** [cram/cram_io.o] Error 1 Sep 19 21:09:44.873 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9 Sep 19 21:09:44.873 INFO kablam! stack backtrace: Sep 19 21:09:44.873 INFO kablam! 0: 0x563a677ae90e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h060561e77e35d806 Sep 19 21:09:44.873 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 19 21:09:44.873 INFO kablam! 1: 0x563a6779d9b6 - std::sys_common::backtrace::print::haea7ed8a1bf250c8 Sep 19 21:09:44.873 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 19 21:09:44.873 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 19 21:09:44.873 INFO kablam! 2: 0x563a6779bd8d - std::panicking::default_hook::{{closure}}::h1005c8854e58be8d Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:211 Sep 19 21:09:44.873 INFO kablam! 3: 0x563a6779bb00 - std::panicking::default_hook::h79143d5863e2bd30 Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:227 Sep 19 21:09:44.873 INFO kablam! 4: 0x563a6779c3fc - std::panicking::rust_panic_with_hook::hd9cae99f6e4776b8 Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:477 Sep 19 21:09:44.873 INFO kablam! 5: 0x563a6752b56f - std::panicking::begin_panic::hfbf0d72db53a550d Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:411 Sep 19 21:09:44.873 INFO kablam! 6: 0x563a671bc234 - build_script_build::main::h7e38cc863801ea56 Sep 19 21:09:44.873 INFO kablam! at /source/build.rs:59 Sep 19 21:09:44.873 INFO kablam! 7: 0x563a671bd35f - std::rt::lang_start::{{closure}}::hf85ac238e7096ce6 Sep 19 21:09:44.873 INFO kablam! at libstd/rt.rs:74 Sep 19 21:09:44.873 INFO kablam! 8: 0x563a6779be92 - std::panicking::try::do_call::had563038a207619d Sep 19 21:09:44.873 INFO kablam! at libstd/rt.rs:59 Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:310 Sep 19 21:09:44.873 INFO kablam! 9: 0x563a677c1449 - __rust_maybe_catch_panic Sep 19 21:09:44.873 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 19 21:09:44.873 INFO kablam! 10: 0x563a677a9025 - std::rt::lang_start_internal::hcd623b62ef9a6b5e Sep 19 21:09:44.873 INFO kablam! at libstd/panicking.rs:289 Sep 19 21:09:44.873 INFO kablam! at libstd/panic.rs:392 Sep 19 21:09:44.873 INFO kablam! at libstd/rt.rs:58 Sep 19 21:09:44.873 INFO kablam! 11: 0x563a671bd337 - std::rt::lang_start::hc62ca8b71f6d56c3 Sep 19 21:09:44.873 INFO kablam! at libstd/rt.rs:74 Sep 19 21:09:44.873 INFO kablam! 12: 0x563a671bc6f9 - main Sep 19 21:09:44.873 INFO kablam! 13: 0x7f95c02f982f - __libc_start_main Sep 19 21:09:44.873 INFO kablam! 14: 0x563a671bb8e8 - _start Sep 19 21:09:44.873 INFO kablam! 15: 0x0 - Sep 19 21:09:44.873 INFO kablam! Sep 19 21:09:44.875 INFO kablam! su: No module specific data is present Sep 19 21:09:45.336 INFO running `"docker" "rm" "-f" "a4d1e4f9b6694754c11761c29879bb16fdd8b7fcbd6b85ebfa24b86dfbc03643"` Sep 19 21:09:45.393 INFO blam! a4d1e4f9b6694754c11761c29879bb16fdd8b7fcbd6b85ebfa24b86dfbc03643