Sep 20 05:27:23.835 INFO checking chemfiles-0.8.0 against master#1e21c9a297a9fe668d62887a3a6a4add8e717b17 for pr-54352
Sep 20 05:27:23.835 INFO running: cargo +1e21c9a297a9fe668d62887a3a6a4add8e717b17-alt check --frozen --all --all-targets
Sep 20 05:27:23.835 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-3/pr-54352/master#1e21c9a297a9fe668d62887a3a6a4add8e717b17:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54352/worker-3/master#1e21c9a297a9fe668d62887a3a6a4add8e717b17:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +1e21c9a297a9fe668d62887a3a6a4add8e717b17-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"`
Sep 20 05:27:23.990 INFO blam! 64425bf5692ddb36bb60952e242ff7c5f37201a234fe3bfcfea19368b4d0a21b
Sep 20 05:27:23.992 INFO running `"docker" "start" "-a" "64425bf5692ddb36bb60952e242ff7c5f37201a234fe3bfcfea19368b4d0a21b"`
Sep 20 05:27:24.553 INFO kablam! usermod: no changes
Sep 20 05:27:24.579 INFO kablam!    Compiling chemfiles-sys v0.8.0
Sep 20 05:28:15.521 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.8.0`
Sep 20 05:28:15.521 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-15af40280b1be407/build-script-build` (exit code: 101)
Sep 20 05:28:15.521 INFO kablam! --- stdout
Sep 20 05:28:15.521 INFO kablam! running: "cmake" "/cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/." "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-a066c7eda325fd23/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
Sep 20 05:28:15.521 INFO kablam! -- The C compiler identification is GNU 5.4.0
Sep 20 05:28:15.521 INFO kablam! -- The CXX compiler identification is GNU 5.4.0
Sep 20 05:28:15.521 INFO kablam! -- Check for working C compiler: /usr/bin/cc
Sep 20 05:28:15.521 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works
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Sep 20 05:28:15.521 INFO kablam! -- Detecting C compiler ABI info - done
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Sep 20 05:28:15.521 INFO kablam! -- Detecting C compile features - done
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Sep 20 05:28:15.521 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works
Sep 20 05:28:15.521 INFO kablam! -- Detecting CXX compiler ABI info
Sep 20 05:28:15.521 INFO kablam! -- Detecting CXX compiler ABI info - done
Sep 20 05:28:15.521 INFO kablam! -- Detecting CXX compile features
Sep 20 05:28:15.521 INFO kablam! -- Detecting CXX compile features - done
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Sep 20 05:28:15.521 INFO kablam! -- Unpacking tng sources
Sep 20 05:28:15.521 INFO kablam! -- Check if the system is big endian
Sep 20 05:28:15.521 INFO kablam! -- Searching 16 bit integer
Sep 20 05:28:15.521 INFO kablam! -- Using unsigned short
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Sep 20 05:28:15.521 INFO kablam! -- Unpacking molfiles sources
Sep 20 05:28:15.521 INFO kablam! -- Configuring done
Sep 20 05:28:15.521 INFO kablam! -- Generating done
Sep 20 05:28:15.521 INFO kablam! -- Build files have been written to: /target/debug/build/chemfiles-sys-a066c7eda325fd23/out/build
Sep 20 05:28:15.521 INFO kablam! running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--"
Sep 20 05:28:15.521 INFO kablam! Scanning dependencies of target molfiles
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Sep 20 05:28:15.522 INFO kablam! [ 28%] Building C object chemfiles/external/tng/CMakeFiles/tng_io.dir/src/compression/rle.c.o
Sep 20 05:28:15.522 INFO kablam! [ 29%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/uncompr.c.o
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Sep 20 05:28:15.522 INFO kablam! [ 42%] Building C object chemfiles/external/netcdf/CMakeFiles/netcdf.dir/libdispatch/datt.c.o
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Sep 20 05:28:15.523 INFO kablam! [ 74%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o
Sep 20 05:28:15.523 INFO kablam! [ 75%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/Residue.cpp.o
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Sep 20 05:28:15.523 INFO kablam! [ 78%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/UnitCell.cpp.o
Sep 20 05:28:15.523 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:182: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o' failed
Sep 20 05:28:15.523 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:86: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o' failed
Sep 20 05:28:15.523 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:230: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o' failed
Sep 20 05:28:15.523 INFO kablam! CMakeFiles/Makefile2:90: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/all' failed
Sep 20 05:28:15.523 INFO kablam! Makefile:127: recipe for target 'all' failed
Sep 20 05:28:15.523 INFO kablam! 
Sep 20 05:28:15.523 INFO kablam! --- stderr
Sep 20 05:28:15.523 INFO kablam! c++: internal compiler error: Killed (program cc1plus)
Sep 20 05:28:15.523 INFO kablam! Please submit a full bug report,
Sep 20 05:28:15.523 INFO kablam! with preprocessed source if appropriate.
Sep 20 05:28:15.523 INFO kablam! See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
Sep 20 05:28:15.523 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/FormatFactory.cpp.o] Error 4
Sep 20 05:28:15.523 INFO kablam! make[2]: *** Waiting for unfinished jobs....
Sep 20 05:28:15.523 INFO kablam! c++: internal compiler error: Killed (program cc1plus)
Sep 20 05:28:15.523 INFO kablam! Please submit a full bug report,
Sep 20 05:28:15.523 INFO kablam! with preprocessed source if appropriate.
Sep 20 05:28:15.523 INFO kablam! See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
Sep 20 05:28:15.523 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Configuration.cpp.o] Error 4
Sep 20 05:28:15.523 INFO kablam! /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/chemfiles/src/Property.cpp:80:1: fatal error: error writing to /tmp/ccJSwIuH.s: Cannot allocate memory
Sep 20 05:28:15.523 INFO kablam!  }
Sep 20 05:28:15.523 INFO kablam!  ^
Sep 20 05:28:15.523 INFO kablam! compilation terminated.
Sep 20 05:28:15.523 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/Property.cpp.o] Error 1
Sep 20 05:28:15.523 INFO kablam! make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2
Sep 20 05:28:15.523 INFO kablam! make: *** [all] Error 2
Sep 20 05:28:15.523 INFO kablam! thread 'main' panicked at '
Sep 20 05:28:15.523 INFO kablam! command did not execute successfully, got: exit code: 2
Sep 20 05:28:15.523 INFO kablam! 
Sep 20 05:28:15.523 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776:5
Sep 20 05:28:15.523 INFO kablam! stack backtrace:
Sep 20 05:28:15.523 INFO kablam!    0:     0x562684d32dfe - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hf109cffeb5c37bed
Sep 20 05:28:15.523 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Sep 20 05:28:15.523 INFO kablam!    1:     0x562684d22b66 - std::sys_common::backtrace::print::h4afa12dd16372edf
Sep 20 05:28:15.523 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Sep 20 05:28:15.523 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Sep 20 05:28:15.523 INFO kablam!    2:     0x562684d214bd - std::panicking::default_hook::{{closure}}::ha3565edfa2d8a8f7
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:211
Sep 20 05:28:15.523 INFO kablam!    3:     0x562684d21230 - std::panicking::default_hook::h68592964d2f4a1f7
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:227
Sep 20 05:28:15.523 INFO kablam!    4:     0x562684d21acc - std::panicking::rust_panic_with_hook::h33d0ce8157f9a0b5
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:477
Sep 20 05:28:15.523 INFO kablam!    5:     0x562684d216c9 - std::panicking::continue_panic_fmt::hbe179dc3877c8fe2
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:391
Sep 20 05:28:15.523 INFO kablam!    6:     0x562684d2162d - std::panicking::begin_panic_fmt::hcc5c596dd2a517d7
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:346
Sep 20 05:28:15.523 INFO kablam!    7:     0x562684cb7c61 - cmake::fail::hcc026dae687a09e4
Sep 20 05:28:15.523 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776
Sep 20 05:28:15.523 INFO kablam!    8:     0x562684cb759a - cmake::run::h035f65033a634acb
Sep 20 05:28:15.523 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:757
Sep 20 05:28:15.523 INFO kablam!    9:     0x562684cb3d3f - cmake::Config::build::h0665bdb115216403
Sep 20 05:28:15.523 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:669
Sep 20 05:28:15.523 INFO kablam!   10:     0x562684caec5e - build_script_build::build_chemfiles::hde9523908949344d
Sep 20 05:28:15.523 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/build.rs:18
Sep 20 05:28:15.523 INFO kablam!   11:     0x562684caea8d - build_script_build::main::hd658320a3a8bef13
Sep 20 05:28:15.523 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/chemfiles-sys-0.8.0/build.rs:8
Sep 20 05:28:15.523 INFO kablam!   12:     0x562684cb0a6f - std::rt::lang_start::{{closure}}::ha9356663f91c2a24
Sep 20 05:28:15.523 INFO kablam!                                at libstd/rt.rs:74
Sep 20 05:28:15.523 INFO kablam!   13:     0x562684d21562 - std::panicking::try::do_call::h7aef401f0d6f2817
Sep 20 05:28:15.523 INFO kablam!                                at libstd/rt.rs:59
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:310
Sep 20 05:28:15.523 INFO kablam!   14:     0x562684d454c9 - __rust_maybe_catch_panic
Sep 20 05:28:15.523 INFO kablam!                                at libpanic_unwind/lib.rs:102
Sep 20 05:28:15.523 INFO kablam!   15:     0x562684d2dbc5 - std::rt::lang_start_internal::hd57f65710f093de9
Sep 20 05:28:15.523 INFO kablam!                                at libstd/panicking.rs:289
Sep 20 05:28:15.524 INFO kablam!                                at libstd/panic.rs:392
Sep 20 05:28:15.524 INFO kablam!                                at libstd/rt.rs:58
Sep 20 05:28:15.524 INFO kablam!   16:     0x562684cb0a47 - std::rt::lang_start::h82598e9eb432caaf
Sep 20 05:28:15.524 INFO kablam!                                at libstd/rt.rs:74
Sep 20 05:28:15.524 INFO kablam!   17:     0x562684caf609 - main
Sep 20 05:28:15.524 INFO kablam!   18:     0x7f331e03582f - __libc_start_main
Sep 20 05:28:15.524 INFO kablam!   19:     0x562684cae968 - _start
Sep 20 05:28:15.524 INFO kablam!   20:                0x0 - <unknown>
Sep 20 05:28:15.524 INFO kablam! 
Sep 20 05:28:15.526 INFO kablam! su: No module specific data is present
Sep 20 05:28:16.638 INFO running `"docker" "rm" "-f" "64425bf5692ddb36bb60952e242ff7c5f37201a234fe3bfcfea19368b4d0a21b"`
Sep 20 05:28:16.787 INFO blam! 64425bf5692ddb36bb60952e242ff7c5f37201a234fe3bfcfea19368b4d0a21b