Sep 19 19:12:50.123 INFO checking rust-htslib-0.21.0 against try#fcacde07b66fe513e52c41b73aef91bcc121905b for pr-54346 Sep 19 19:12:50.123 INFO running: cargo +fcacde07b66fe513e52c41b73aef91bcc121905b-alt check --frozen --all --all-targets Sep 19 19:12:50.123 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-1/pr-54346/try#fcacde07b66fe513e52c41b73aef91bcc121905b:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54346/worker-1/try#fcacde07b66fe513e52c41b73aef91bcc121905b:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +fcacde07b66fe513e52c41b73aef91bcc121905b-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 19 19:12:50.590 INFO blam! dc02878f697902a8761eeba627e93ffe7562a32e8eadc30994870d0c606ec1d8 Sep 19 19:12:50.595 INFO running `"docker" "start" "-a" "dc02878f697902a8761eeba627e93ffe7562a32e8eadc30994870d0c606ec1d8"` Sep 19 19:12:51.871 INFO kablam! usermod: no changes Sep 19 19:12:52.179 INFO kablam! Compiling bindgen v0.36.1 Sep 19 19:12:52.195 INFO kablam! Checking linear-map v1.2.0 Sep 19 19:12:52.207 INFO kablam! Compiling clang-sys v0.22.0 Sep 19 19:12:52.219 INFO kablam! Compiling fs-utils v1.1.0 Sep 19 19:12:52.219 INFO kablam! Checking bio-types v0.3.0 Sep 19 19:13:20.447 INFO kablam! Compiling rust-htslib v0.21.0 (/source) Sep 19 19:13:42.799 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (/source)` Sep 19 19:13:42.799 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-89cbf6c4ca541d88/build-script-build` (exit code: 101) Sep 19 19:13:42.799 INFO kablam! --- stdout Sep 19 19:13:42.799 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h Sep 19 19:13:42.799 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h Sep 19 19:13:42.799 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h Sep 19 19:13:42.799 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h Sep 19 19:13:42.799 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kfunc.o kfunc.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o knetfile.o knetfile.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kstring.o kstring.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bcf_sr_sort.o bcf_sr_sort.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bgzf.o bgzf.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o errmod.o errmod.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o faidx.o faidx.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile.o hfile.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile_net.o hfile_net.c Sep 19 19:13:42.799 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts.o hts.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts_os.o hts_os.c Sep 19 19:13:42.799 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o md5.o md5.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o multipart.o multipart.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o probaln.o probaln.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o realn.o realn.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o regidx.o regidx.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o sam.o sam.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o synced_bcf_reader.o synced_bcf_reader.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf_sweep.o vcf_sweep.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o tbx.o tbx.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o textutils.o textutils.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o thread_pool.o thread_pool.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf.o vcf.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcfutils.o vcfutils.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_codecs.o cram/cram_codecs.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_decode.o cram/cram_decode.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_encode.o cram/cram_encode.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_external.o cram/cram_external.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_index.o cram/cram_index.c Sep 19 19:13:42.800 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_io.o cram/cram_io.c Sep 19 19:13:42.800 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed Sep 19 19:13:42.800 INFO kablam! Sep 19 19:13:42.800 INFO kablam! --- stderr Sep 19 19:13:42.800 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory Sep 19 19:13:42.800 INFO kablam! compilation terminated. Sep 19 19:13:42.800 INFO kablam! make: *** [cram/cram_io.o] Error 1 Sep 19 19:13:42.800 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9 Sep 19 19:13:42.800 INFO kablam! stack backtrace: Sep 19 19:13:42.800 INFO kablam! 0: 0x5629efe5b46e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::hb15377632860511c Sep 19 19:13:42.800 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 19 19:13:42.800 INFO kablam! 1: 0x5629efe4a5a6 - std::sys_common::backtrace::print::h5d8590a6e2d9b4d0 Sep 19 19:13:42.800 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 19 19:13:42.800 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 19 19:13:42.800 INFO kablam! 2: 0x5629efe4892d - std::panicking::default_hook::{{closure}}::h6b199dbb344e9d26 Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:211 Sep 19 19:13:42.800 INFO kablam! 3: 0x5629efe486a0 - std::panicking::default_hook::hdd3395c8325d6307 Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:227 Sep 19 19:13:42.800 INFO kablam! 4: 0x5629efe48f9c - std::panicking::rust_panic_with_hook::h0a0a8bf209620e46 Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:477 Sep 19 19:13:42.800 INFO kablam! 5: 0x5629efd98a7f - std::panicking::begin_panic::hb974e30dadc318eb Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:411 Sep 19 19:13:42.800 INFO kablam! 6: 0x5629ef868234 - build_script_build::main::h9e620e539b33877a Sep 19 19:13:42.800 INFO kablam! at /source/build.rs:59 Sep 19 19:13:42.800 INFO kablam! 7: 0x5629ef86935f - std::rt::lang_start::{{closure}}::h95321f4b437354c9 Sep 19 19:13:42.800 INFO kablam! at libstd/rt.rs:74 Sep 19 19:13:42.800 INFO kablam! 8: 0x5629efe48a32 - std::panicking::try::do_call::h8a07bd8680bcbc89 Sep 19 19:13:42.800 INFO kablam! at libstd/rt.rs:59 Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:310 Sep 19 19:13:42.800 INFO kablam! 9: 0x5629efe6e2e9 - __rust_maybe_catch_panic Sep 19 19:13:42.800 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 19 19:13:42.800 INFO kablam! 10: 0x5629efe55b85 - std::rt::lang_start_internal::h50312fa700ccedfd Sep 19 19:13:42.800 INFO kablam! at libstd/panicking.rs:289 Sep 19 19:13:42.800 INFO kablam! at libstd/panic.rs:392 Sep 19 19:13:42.800 INFO kablam! at libstd/rt.rs:58 Sep 19 19:13:42.801 INFO kablam! 11: 0x5629ef869337 - std::rt::lang_start::hb59a7694181643fb Sep 19 19:13:42.801 INFO kablam! at libstd/rt.rs:74 Sep 19 19:13:42.801 INFO kablam! 12: 0x5629ef8686f9 - main Sep 19 19:13:42.801 INFO kablam! 13: 0x7f7d952fb82f - __libc_start_main Sep 19 19:13:42.801 INFO kablam! 14: 0x5629ef8678e8 - _start Sep 19 19:13:42.801 INFO kablam! 15: 0x0 - Sep 19 19:13:42.801 INFO kablam! Sep 19 19:13:42.802 INFO kablam! su: No module specific data is present Sep 19 19:13:43.639 INFO running `"docker" "rm" "-f" "dc02878f697902a8761eeba627e93ffe7562a32e8eadc30994870d0c606ec1d8"` Sep 19 19:13:43.884 INFO blam! dc02878f697902a8761eeba627e93ffe7562a32e8eadc30994870d0c606ec1d8