Sep 20 03:46:26.783 INFO checking chemfiles-sys-0.8.0 against master#ff6422d7a392acfc8af28994d65af2bbaecea4f6 for pr-54346 Sep 20 03:46:26.783 INFO running: cargo +ff6422d7a392acfc8af28994d65af2bbaecea4f6-alt check --frozen --all --all-targets Sep 20 03:46:26.783 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-1/pr-54346/master#ff6422d7a392acfc8af28994d65af2bbaecea4f6:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-54346/worker-1/master#ff6422d7a392acfc8af28994d65af2bbaecea4f6:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "CMD=cargo +ff6422d7a392acfc8af28994d65af2bbaecea4f6-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "1536M" "crater"` Sep 20 03:46:26.984 INFO blam! 800d3d826a595d917cd775327834b44d6177bc591bb9a17b9dc2a9a868e9b9b6 Sep 20 03:46:26.986 INFO running `"docker" "start" "-a" "800d3d826a595d917cd775327834b44d6177bc591bb9a17b9dc2a9a868e9b9b6"` Sep 20 03:46:27.979 INFO kablam! usermod: no changes Sep 20 03:46:28.013 INFO kablam! Compiling chemfiles-sys v0.8.0 (/source) Sep 20 03:47:41.783 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.8.0 (/source)` Sep 20 03:47:41.783 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-c78c30b510a720b3/build-script-build` (exit code: 101) Sep 20 03:47:41.783 INFO kablam! --- stdout Sep 20 03:47:41.783 INFO kablam! running: "cmake" "/source/." "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-e1dd56861e076d9f/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug" Sep 20 03:47:41.783 INFO kablam! -- The C compiler identification is GNU 5.4.0 Sep 20 03:47:41.783 INFO kablam! -- The CXX compiler identification is GNU 5.4.0 Sep 20 03:47:41.783 INFO kablam! -- Check for working C compiler: /usr/bin/cc Sep 20 03:47:41.783 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works Sep 20 03:47:41.783 INFO kablam! -- Detecting C compiler ABI info Sep 20 03:47:41.783 INFO kablam! -- Detecting C compiler ABI info - done Sep 20 03:47:41.783 INFO kablam! -- Detecting C compile features Sep 20 03:47:41.783 INFO kablam! -- Detecting C compile features - done Sep 20 03:47:41.783 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ Sep 20 03:47:41.783 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works Sep 20 03:47:41.783 INFO kablam! -- Detecting CXX compiler ABI info Sep 20 03:47:41.783 INFO kablam! -- Detecting CXX compiler ABI info - done Sep 20 03:47:41.783 INFO kablam! -- Detecting CXX compile features Sep 20 03:47:41.783 INFO kablam! -- Detecting CXX compile features - done Sep 20 03:47:41.783 INFO kablam! -- Unpacking fmt sources Sep 20 03:47:41.783 INFO kablam! -- Unpacking toml11 sources Sep 20 03:47:41.783 INFO kablam! -- Unpacking netcdf sources Sep 20 03:47:41.783 INFO kablam! -- Unpacking tng sources Sep 20 03:47:41.783 INFO kablam! -- Check if the system is big endian Sep 20 03:47:41.783 INFO kablam! -- Searching 16 bit integer Sep 20 03:47:41.783 INFO kablam! -- Using unsigned short Sep 20 03:47:41.783 INFO kablam! -- Check if the system is big endian - little endian Sep 20 03:47:41.783 INFO kablam! -- Unpacking molfiles sources Sep 20 03:47:41.783 INFO kablam! -- Configuring done Sep 20 03:47:41.783 INFO kablam! -- Generating done Sep 20 03:47:41.783 INFO kablam! -- Build files have been written to: /target/debug/build/chemfiles-sys-e1dd56861e076d9f/out/build Sep 20 03:47:41.783 INFO kablam! running: "cmake" "--build" "." "--target" "install" "--config" "Debug" "--" Sep 20 03:47:41.783 INFO kablam! Scanning dependencies of target molfiles Sep 20 03:47:41.783 INFO kablam! Scanning dependencies of target fmt-object Sep 20 03:47:41.783 INFO kablam! Scanning dependencies of target tng_io_zlib Sep 20 03:47:41.783 INFO kablam! Scanning dependencies of target tng_io Sep 20 03:47:41.783 INFO kablam! [ 1%] Building C object chemfiles/external/tng/CMakeFiles/tng_io_zlib.dir/external/zlib/adler32.c.o Sep 20 03:47:41.783 INFO kablam! [ 2%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/lammpsplugin.c.o Sep 20 03:47:41.783 INFO kablam! [ 3%] Building C object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/dcdplugin.c.o Sep 20 03:47:41.783 INFO kablam! [ 4%] Building CXX object chemfiles/external/molfiles/CMakeFiles/molfiles.dir/src/gromacsplugin.cxx.o Sep 20 03:47:41.783 INFO kablam! 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[ 96%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/generic.cpp.o Sep 20 03:47:41.789 INFO kablam! [ 97%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/expr.cpp.o Sep 20 03:47:41.789 INFO kablam! [ 98%] Building CXX object chemfiles/CMakeFiles/chemfiles_objects.dir/src/selections/lexer.cpp.o Sep 20 03:47:41.789 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:686: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o' failed Sep 20 03:47:41.789 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:710: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o' failed Sep 20 03:47:41.789 INFO kablam! chemfiles/CMakeFiles/chemfiles_objects.dir/build.make:758: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o' failed Sep 20 03:47:41.789 INFO kablam! CMakeFiles/Makefile2:90: recipe for target 'chemfiles/CMakeFiles/chemfiles_objects.dir/all' failed Sep 20 03:47:41.789 INFO kablam! Makefile:127: recipe for target 'all' failed Sep 20 03:47:41.789 INFO kablam! Sep 20 03:47:41.789 INFO kablam! --- stderr Sep 20 03:47:41.789 INFO kablam! c++: internal compiler error: Killed (program cc1plus) Sep 20 03:47:41.789 INFO kablam! Please submit a full bug report, Sep 20 03:47:41.789 INFO kablam! with preprocessed source if appropriate. Sep 20 03:47:41.789 INFO kablam! See for instructions. Sep 20 03:47:41.789 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/LAMMPSData.cpp.o] Error 4 Sep 20 03:47:41.789 INFO kablam! make[2]: *** Waiting for unfinished jobs.... Sep 20 03:47:41.789 INFO kablam! c++: internal compiler error: Killed (program cc1plus) Sep 20 03:47:41.789 INFO kablam! Please submit a full bug report, Sep 20 03:47:41.789 INFO kablam! with preprocessed source if appropriate. Sep 20 03:47:41.789 INFO kablam! See for instructions. Sep 20 03:47:41.789 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/Molfile.cpp.o] Error 4 Sep 20 03:47:41.789 INFO kablam! /source/chemfiles/src/formats/TNG.cpp:222:1: fatal error: error writing to /tmp/ccXZSm0z.s: Cannot allocate memory Sep 20 03:47:41.789 INFO kablam! } Sep 20 03:47:41.789 INFO kablam! ^ Sep 20 03:47:41.789 INFO kablam! compilation terminated. Sep 20 03:47:41.789 INFO kablam! make[2]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/src/formats/TNG.cpp.o] Error 1 Sep 20 03:47:41.789 INFO kablam! make[1]: *** [chemfiles/CMakeFiles/chemfiles_objects.dir/all] Error 2 Sep 20 03:47:41.789 INFO kablam! make: *** [all] Error 2 Sep 20 03:47:41.789 INFO kablam! thread 'main' panicked at ' Sep 20 03:47:41.789 INFO kablam! command did not execute successfully, got: exit code: 2 Sep 20 03:47:41.789 INFO kablam! Sep 20 03:47:41.789 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776:5 Sep 20 03:47:41.789 INFO kablam! stack backtrace: Sep 20 03:47:41.789 INFO kablam! 0: 0x564787becdee - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h30b7df3ff3ebc526 Sep 20 03:47:41.789 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Sep 20 03:47:41.789 INFO kablam! 1: 0x564787bdcb56 - std::sys_common::backtrace::print::hc6a3affd651da617 Sep 20 03:47:41.789 INFO kablam! at libstd/sys_common/backtrace.rs:71 Sep 20 03:47:41.789 INFO kablam! at libstd/sys_common/backtrace.rs:59 Sep 20 03:47:41.789 INFO kablam! 2: 0x564787bdb4ad - std::panicking::default_hook::{{closure}}::h24bcdc46ff1bdd94 Sep 20 03:47:41.789 INFO kablam! at libstd/panicking.rs:211 Sep 20 03:47:41.789 INFO kablam! 3: 0x564787bdb220 - std::panicking::default_hook::h5357f8ba3cb65742 Sep 20 03:47:41.789 INFO kablam! at libstd/panicking.rs:227 Sep 20 03:47:41.789 INFO kablam! 4: 0x564787bdbabc - std::panicking::rust_panic_with_hook::h65b641598223039e Sep 20 03:47:41.789 INFO kablam! at libstd/panicking.rs:477 Sep 20 03:47:41.789 INFO kablam! 5: 0x564787bdb6b9 - std::panicking::continue_panic_fmt::h192f6492adc3fcba Sep 20 03:47:41.789 INFO kablam! at libstd/panicking.rs:391 Sep 20 03:47:41.789 INFO kablam! 6: 0x564787bdb61d - std::panicking::begin_panic_fmt::he46641892af93567 Sep 20 03:47:41.789 INFO kablam! at libstd/panicking.rs:346 Sep 20 03:47:41.790 INFO kablam! 7: 0x564787b71c61 - cmake::fail::h7aa6de7f911359f4 Sep 20 03:47:41.790 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:776 Sep 20 03:47:41.790 INFO kablam! 8: 0x564787b7159a - cmake::run::h349cab6aba51d322 Sep 20 03:47:41.790 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:757 Sep 20 03:47:41.790 INFO kablam! 9: 0x564787b6dd3f - cmake::Config::build::ha262df773b0a3330 Sep 20 03:47:41.790 INFO kablam! at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.34/src/lib.rs:669 Sep 20 03:47:41.791 INFO kablam! 10: 0x564787b69f7e - build_script_build::build_chemfiles::hf780259db018bc5d Sep 20 03:47:41.791 INFO kablam! at /source/build.rs:18 Sep 20 03:47:41.791 INFO kablam! 11: 0x564787b69dad - build_script_build::main::hb39dc955000d4647 Sep 20 03:47:41.791 INFO kablam! at /source/build.rs:8 Sep 20 03:47:41.791 INFO kablam! 12: 0x564787b6ab4f - std::rt::lang_start::{{closure}}::h26b40a5671b24085 Sep 20 03:47:41.791 INFO kablam! at libstd/rt.rs:74 Sep 20 03:47:41.791 INFO kablam! 13: 0x564787bdb552 - std::panicking::try::do_call::h817ce9e4aa46557f Sep 20 03:47:41.791 INFO kablam! at libstd/rt.rs:59 Sep 20 03:47:41.791 INFO kablam! at libstd/panicking.rs:310 Sep 20 03:47:41.791 INFO kablam! 14: 0x564787bffa79 - __rust_maybe_catch_panic Sep 20 03:47:41.791 INFO kablam! at libpanic_unwind/lib.rs:102 Sep 20 03:47:41.791 INFO kablam! 15: 0x564787be7bb5 - std::rt::lang_start_internal::h74522e2641913464 Sep 20 03:47:41.791 INFO kablam! at libstd/panicking.rs:289 Sep 20 03:47:41.791 INFO kablam! at libstd/panic.rs:392 Sep 20 03:47:41.791 INFO kablam! at libstd/rt.rs:58 Sep 20 03:47:41.791 INFO kablam! 16: 0x564787b6ab27 - std::rt::lang_start::h9b5fbd6117a39f3b Sep 20 03:47:41.791 INFO kablam! at libstd/rt.rs:74 Sep 20 03:47:41.791 INFO kablam! 17: 0x564787b6a929 - main Sep 20 03:47:41.791 INFO kablam! 18: 0x7f925021982f - __libc_start_main Sep 20 03:47:41.791 INFO kablam! 19: 0x564787b68968 - _start Sep 20 03:47:41.791 INFO kablam! 20: 0x0 - Sep 20 03:47:41.791 INFO kablam! Sep 20 03:47:41.791 INFO kablam! su: No module specific data is present Sep 20 03:47:42.618 INFO running `"docker" "rm" "-f" "800d3d826a595d917cd775327834b44d6177bc591bb9a17b9dc2a9a868e9b9b6"` Sep 20 03:47:42.860 INFO blam! 800d3d826a595d917cd775327834b44d6177bc591bb9a17b9dc2a9a868e9b9b6