Dec 18 18:10:44.472 INFO checking bio-0.24.0 against master#96d1334e567237b1507cd277938e7ae2de75ff51 for pr-54252 Dec 18 18:10:44.472 INFO running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/pr-54252/worker-1/master#96d1334e567237b1507cd277938e7ae2de75ff51:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/pr-54252/sources/master#96d1334e567237b1507cd277938e7ae2de75ff51/reg/bio/0.24.0:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+96d1334e567237b1507cd277938e7ae2de75ff51-alt" "check" "--frozen" "--all" "--all-targets"` Dec 18 18:10:44.835 INFO [stdout] 98935d98401a9a692fd677cbc33ba3d42ab9c492a69e764d0913541377de5220 Dec 18 18:10:44.840 INFO running `"docker" "start" "-a" "98935d98401a9a692fd677cbc33ba3d42ab9c492a69e764d0913541377de5220"` Dec 18 18:10:45.597 INFO [stderr] Compiling feature-probe v0.1.1 Dec 18 18:10:45.600 INFO [stderr] Compiling bio v0.24.0 (/opt/crater/workdir) Dec 18 18:10:45.600 INFO [stderr] Checking approx v0.3.1 Dec 18 18:10:45.600 INFO [stderr] Checking statrs v0.9.0 Dec 18 18:10:45.605 INFO [stderr] Checking multimap v0.4.0 Dec 18 18:10:45.605 INFO [stderr] Checking bio-types v0.4.0 Dec 18 18:10:45.605 INFO [stderr] Checking csv v1.0.5 Dec 18 18:10:45.605 INFO [stderr] Checking vec_map v0.8.1 Dec 18 18:10:47.385 INFO [stderr] Compiling bv v0.10.0 Dec 18 18:10:54.344 INFO [stderr] warning: unused import: `std::ops::Deref` Dec 18 18:10:54.344 INFO [stderr] --> src/data_structures/bwt.rs:15:5 Dec 18 18:10:54.344 INFO [stderr] | Dec 18 18:10:54.344 INFO [stderr] 15 | use std::ops::Deref; Dec 18 18:10:54.344 INFO [stderr] | ^^^^^^^^^^^^^^^ Dec 18 18:10:54.344 INFO [stderr] | Dec 18 18:10:54.344 INFO [stderr] = note: #[warn(unused_imports)] on by default Dec 18 18:10:54.344 INFO [stderr] Dec 18 18:10:54.825 INFO [stderr] warning: unused import: `std::ops::Deref` Dec 18 18:10:54.825 INFO [stderr] --> src/data_structures/bwt.rs:15:5 Dec 18 18:10:54.825 INFO [stderr] | Dec 18 18:10:54.825 INFO [stderr] 15 | use std::ops::Deref; Dec 18 18:10:54.825 INFO [stderr] | ^^^^^^^^^^^^^^^ Dec 18 18:10:54.825 INFO [stderr] | Dec 18 18:10:54.825 INFO [stderr] = note: #[warn(unused_imports)] on by default Dec 18 18:10:54.825 INFO [stderr] Dec 18 18:10:55.764 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.764 INFO [stderr] --> src/io/fasta.rs:102:14 Dec 18 18:10:55.764 INFO [stderr] | Dec 18 18:10:55.764 INFO [stderr] 102 | .trim_right() Dec 18 18:10:55.764 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.764 INFO [stderr] | Dec 18 18:10:55.764 INFO [stderr] = note: #[warn(deprecated)] on by default Dec 18 18:10:55.764 INFO [stderr] Dec 18 18:10:55.764 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.764 INFO [stderr] --> src/io/fasta.rs:108:14 Dec 18 18:10:55.764 INFO [stderr] | Dec 18 18:10:55.764 INFO [stderr] 108 | .trim_right() Dec 18 18:10:55.764 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.764 INFO [stderr] Dec 18 18:10:55.764 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.764 INFO [stderr] --> src/io/fasta.rs:118:43 Dec 18 18:10:55.764 INFO [stderr] | Dec 18 18:10:55.764 INFO [stderr] 118 | record.seq.push_str(self.line.trim_right()); Dec 18 18:10:55.764 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.764 INFO [stderr] Dec 18 18:10:55.864 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.864 INFO [stderr] --> src/io/fastq.rs:65:18 Dec 18 18:10:55.864 INFO [stderr] | Dec 18 18:10:55.864 INFO [stderr] 65 | .trim_right() Dec 18 18:10:55.864 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.864 INFO [stderr] Dec 18 18:10:55.864 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.864 INFO [stderr] --> src/io/fastq.rs:71:18 Dec 18 18:10:55.864 INFO [stderr] | Dec 18 18:10:55.864 INFO [stderr] 71 | .trim_right() Dec 18 18:10:55.864 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.864 INFO [stderr] Dec 18 18:10:55.896 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.896 INFO [stderr] --> src/io/fastq.rs:169:18 Dec 18 18:10:55.896 INFO [stderr] | Dec 18 18:10:55.896 INFO [stderr] 169 | self.seq.trim_right().as_bytes() Dec 18 18:10:55.896 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.896 INFO [stderr] Dec 18 18:10:55.896 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:55.896 INFO [stderr] --> src/io/fastq.rs:174:19 Dec 18 18:10:55.896 INFO [stderr] | Dec 18 18:10:55.896 INFO [stderr] 174 | self.qual.trim_right().as_bytes() Dec 18 18:10:55.896 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:55.896 INFO [stderr] Dec 18 18:10:56.512 INFO [stderr] warning: use of deprecated item 'ndarray::impl_methods::>::subview': renamed to `index_axis` Dec 18 18:10:56.512 INFO [stderr] --> src/stats/hmm.rs:266:22 Dec 18 18:10:56.512 INFO [stderr] | Dec 18 18:10:56.512 INFO [stderr] 266 | .subview(Axis(0), i - 1) Dec 18 18:10:56.512 INFO [stderr] | ^^^^^^^ Dec 18 18:10:56.512 INFO [stderr] Dec 18 18:10:57.352 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.352 INFO [stderr] --> src/io/fasta.rs:102:14 Dec 18 18:10:57.352 INFO [stderr] | Dec 18 18:10:57.352 INFO [stderr] 102 | .trim_right() Dec 18 18:10:57.352 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.352 INFO [stderr] | Dec 18 18:10:57.352 INFO [stderr] = note: #[warn(deprecated)] on by default Dec 18 18:10:57.352 INFO [stderr] Dec 18 18:10:57.354 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.354 INFO [stderr] --> src/io/fasta.rs:108:14 Dec 18 18:10:57.354 INFO [stderr] | Dec 18 18:10:57.354 INFO [stderr] 108 | .trim_right() Dec 18 18:10:57.354 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.354 INFO [stderr] Dec 18 18:10:57.356 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.356 INFO [stderr] --> src/io/fasta.rs:118:43 Dec 18 18:10:57.356 INFO [stderr] | Dec 18 18:10:57.356 INFO [stderr] 118 | record.seq.push_str(self.line.trim_right()); Dec 18 18:10:57.356 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.356 INFO [stderr] Dec 18 18:10:57.604 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.604 INFO [stderr] --> src/io/fastq.rs:65:18 Dec 18 18:10:57.604 INFO [stderr] | Dec 18 18:10:57.604 INFO [stderr] 65 | .trim_right() Dec 18 18:10:57.604 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.604 INFO [stderr] Dec 18 18:10:57.604 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.604 INFO [stderr] --> src/io/fastq.rs:71:18 Dec 18 18:10:57.604 INFO [stderr] | Dec 18 18:10:57.604 INFO [stderr] 71 | .trim_right() Dec 18 18:10:57.604 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.604 INFO [stderr] Dec 18 18:10:57.632 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.632 INFO [stderr] --> src/io/fastq.rs:169:18 Dec 18 18:10:57.632 INFO [stderr] | Dec 18 18:10:57.632 INFO [stderr] 169 | self.seq.trim_right().as_bytes() Dec 18 18:10:57.632 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.632 INFO [stderr] Dec 18 18:10:57.632 INFO [stderr] warning: use of deprecated item 'core::str::::trim_right': superseded by `trim_end` Dec 18 18:10:57.632 INFO [stderr] --> src/io/fastq.rs:174:19 Dec 18 18:10:57.632 INFO [stderr] | Dec 18 18:10:57.632 INFO [stderr] 174 | self.qual.trim_right().as_bytes() Dec 18 18:10:57.632 INFO [stderr] | ^^^^^^^^^^ Dec 18 18:10:57.632 INFO [stderr] Dec 18 18:10:58.504 INFO [stderr] warning: use of deprecated item 'ndarray::impl_methods::>::subview': renamed to `index_axis` Dec 18 18:10:58.504 INFO [stderr] --> src/stats/hmm.rs:266:22 Dec 18 18:10:58.504 INFO [stderr] | Dec 18 18:10:58.504 INFO [stderr] 266 | .subview(Axis(0), i - 1) Dec 18 18:10:58.504 INFO [stderr] | ^^^^^^^ Dec 18 18:10:58.504 INFO [stderr] Dec 18 18:11:07.373 INFO [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used Dec 18 18:11:07.373 INFO [stderr] --> benches/pattern_matching.rs:232:13 Dec 18 18:11:07.373 INFO [stderr] | Dec 18 18:11:07.374 INFO [stderr] 232 | shiftand.find_all(TEXT.iter()).collect::>(); Dec 18 18:11:07.374 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 18 18:11:07.388 INFO [stderr] | Dec 18 18:11:07.389 INFO [stderr] = note: #[warn(unused_must_use)] on by default Dec 18 18:11:07.389 INFO [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Dec 18 18:11:07.389 INFO [stderr] Dec 18 18:11:07.390 INFO [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used Dec 18 18:11:07.390 INFO [stderr] --> benches/pattern_matching.rs:242:13 Dec 18 18:11:07.390 INFO [stderr] | Dec 18 18:11:07.390 INFO [stderr] 242 | bndm.find_all(TEXT).collect::>(); Dec 18 18:11:07.391 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 18 18:11:07.391 INFO [stderr] | Dec 18 18:11:07.391 INFO [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Dec 18 18:11:07.391 INFO [stderr] Dec 18 18:11:07.393 INFO [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used Dec 18 18:11:07.393 INFO [stderr] --> benches/pattern_matching.rs:252:13 Dec 18 18:11:07.393 INFO [stderr] | Dec 18 18:11:07.393 INFO [stderr] 252 | bom.find_all(TEXT).collect::>(); Dec 18 18:11:07.393 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 18 18:11:07.393 INFO [stderr] | Dec 18 18:11:07.394 INFO [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Dec 18 18:11:07.394 INFO [stderr] Dec 18 18:11:07.394 INFO [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used Dec 18 18:11:07.395 INFO [stderr] --> benches/pattern_matching.rs:262:13 Dec 18 18:11:07.395 INFO [stderr] | Dec 18 18:11:07.395 INFO [stderr] 262 | horspool.find_all(TEXT).collect::>(); Dec 18 18:11:07.395 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 18 18:11:07.408 INFO [stderr] | Dec 18 18:11:07.409 INFO [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Dec 18 18:11:07.409 INFO [stderr] Dec 18 18:11:07.410 INFO [stderr] warning: unused return value of `std::iter::Iterator::collect` that must be used Dec 18 18:11:07.410 INFO [stderr] --> benches/pattern_matching.rs:272:13 Dec 18 18:11:07.410 INFO [stderr] | Dec 18 18:11:07.410 INFO [stderr] 272 | kmp.find_all(TEXT.iter()).collect::>(); Dec 18 18:11:07.410 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Dec 18 18:11:07.410 INFO [stderr] | Dec 18 18:11:07.411 INFO [stderr] = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Dec 18 18:11:07.411 INFO [stderr] Dec 18 18:11:11.940 INFO [stderr] warning: unnecessary parentheses around function argument Dec 18 18:11:11.940 INFO [stderr] --> benches/interval_tree.rs:17:64 Dec 18 18:11:11.940 INFO [stderr] | Dec 18 18:11:11.940 INFO [stderr] 17 | b.iter(|| test_insert_query(10, &(100_000..200_000), 1000, (105_000..106_000))); Dec 18 18:11:11.940 INFO [stderr] | ^^^^^^^^^^^^^^^^^^ help: remove these parentheses Dec 18 18:11:11.940 INFO [stderr] | Dec 18 18:11:11.940 INFO [stderr] = note: #[warn(unused_parens)] on by default Dec 18 18:11:11.940 INFO [stderr] Dec 18 18:11:11.940 INFO [stderr] warning: unnecessary parentheses around function argument Dec 18 18:11:11.940 INFO [stderr] --> benches/interval_tree.rs:24:62 Dec 18 18:11:11.940 INFO [stderr] | Dec 18 18:11:11.940 INFO [stderr] 24 | b.iter(|| test_insert_query(10, &(100_000..200_000), 10, (99_995..199_995))); Dec 18 18:11:11.940 INFO [stderr] | ^^^^^^^^^^^^^^^^^ help: remove these parentheses Dec 18 18:11:11.940 INFO [stderr] Dec 18 18:11:11.941 INFO [stderr] warning: unnecessary parentheses around method argument Dec 18 18:11:11.941 INFO [stderr] --> benches/interval_tree.rs:36:21 Dec 18 18:11:11.941 INFO [stderr] | Dec 18 18:11:11.941 INFO [stderr] 36 | tree.insert((i..i + insert_size), (i..i + insert_size)); Dec 18 18:11:11.941 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Dec 18 18:11:11.941 INFO [stderr] Dec 18 18:11:11.941 INFO [stderr] warning: unnecessary parentheses around method argument Dec 18 18:11:11.941 INFO [stderr] --> benches/interval_tree.rs:36:43 Dec 18 18:11:11.941 INFO [stderr] | Dec 18 18:11:11.941 INFO [stderr] 36 | tree.insert((i..i + insert_size), (i..i + insert_size)); Dec 18 18:11:11.941 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Dec 18 18:11:11.941 INFO [stderr] Dec 18 18:11:11.941 INFO [stderr] warning: unnecessary parentheses around function argument Dec 18 18:11:11.941 INFO [stderr] --> benches/interval_tree.rs:47:37 Dec 18 18:11:11.941 INFO [stderr] | Dec 18 18:11:11.941 INFO [stderr] 47 | assert_intersections(&tree, (lower_bound..upper_bound), &expected_intersections); Dec 18 18:11:11.941 INFO [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Dec 18 18:11:11.941 INFO [stderr] Dec 18 18:11:12.504 INFO [stderr] Finished dev [unoptimized + debuginfo] target(s) in 27.05s Dec 18 18:11:13.047 INFO running `"docker" "inspect" "98935d98401a9a692fd677cbc33ba3d42ab9c492a69e764d0913541377de5220"` Dec 18 18:11:13.126 INFO running `"docker" "rm" "-f" "98935d98401a9a692fd677cbc33ba3d42ab9c492a69e764d0913541377de5220"` Dec 18 18:11:13.236 INFO [stdout] 98935d98401a9a692fd677cbc33ba3d42ab9c492a69e764d0913541377de5220