Sep 04 08:04:39.374 INFO checking rust-htslib-0.21.0 against try#5fe695a3844714c70e8f7731a553f7947987a68a for pr-53913
Sep 04 08:04:39.374 INFO running: cargo +5fe695a3844714c70e8f7731a553f7947987a68a-alt check --frozen --all --all-targets
Sep 04 08:04:39.374 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-3/pr-53913/try#5fe695a3844714c70e8f7731a553f7947987a68a:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53913/worker-3/try#5fe695a3844714c70e8f7731a553f7947987a68a:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +5fe695a3844714c70e8f7731a553f7947987a68a-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "2G" "crater"`
Sep 04 08:04:39.559 INFO blam! a936decafe8e0e0aebe13924520efbc12c041df6ef2fc67c7424977444187b09
Sep 04 08:04:39.561 INFO running `"docker" "start" "-a" "a936decafe8e0e0aebe13924520efbc12c041df6ef2fc67c7424977444187b09"`
Sep 04 08:04:40.465 INFO kablam!     Checking ieee754 v0.2.2
Sep 04 08:04:40.465 INFO kablam!     Checking linear-map v1.2.0
Sep 04 08:04:40.467 INFO kablam!    Compiling fs-utils v1.1.0
Sep 04 08:04:40.470 INFO kablam!     Checking bio-types v0.2.0
Sep 04 08:04:41.410 INFO kablam!    Compiling rust-htslib v0.21.0 (file:///source)
Sep 04 08:05:03.355 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (file:///source)`
Sep 04 08:05:03.355 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-a62abe64ca352fc8/build-script-build` (exit code: 101)
Sep 04 08:05:03.355 INFO kablam! --- stdout
Sep 04 08:05:03.355 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h
Sep 04 08:05:03.355 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h
Sep 04 08:05:03.355 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h
Sep 04 08:05:03.355 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h
Sep 04 08:05:03.355 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o kfunc.o kfunc.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o knetfile.o knetfile.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o kstring.o kstring.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o bcf_sr_sort.o bcf_sr_sort.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o bgzf.o bgzf.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o errmod.o errmod.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o faidx.o faidx.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o hfile.o hfile.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o hfile_net.o hfile_net.c
Sep 04 08:05:03.355 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o hts.o hts.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o hts_os.o hts_os.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o md5.o md5.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o multipart.o multipart.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o probaln.o probaln.c
Sep 04 08:05:03.355 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o realn.o realn.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o regidx.o regidx.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o sam.o sam.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o synced_bcf_reader.o synced_bcf_reader.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o vcf_sweep.o vcf_sweep.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o tbx.o tbx.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o textutils.o textutils.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o thread_pool.o thread_pool.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o vcf.o vcf.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o vcfutils.o vcfutils.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_codecs.o cram/cram_codecs.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_decode.o cram/cram_decode.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_encode.o cram/cram_encode.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_external.o cram/cram_external.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_index.o cram/cram_index.c
Sep 04 08:05:03.356 INFO kablam! gcc -g -Wall -O2 -fPIC -I.  -c -o cram/cram_io.o cram/cram_io.c
Sep 04 08:05:03.356 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed
Sep 04 08:05:03.356 INFO kablam! 
Sep 04 08:05:03.356 INFO kablam! --- stderr
Sep 04 08:05:03.356 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory
Sep 04 08:05:03.356 INFO kablam! compilation terminated.
Sep 04 08:05:03.356 INFO kablam! make: *** [cram/cram_io.o] Error 1
Sep 04 08:05:03.356 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9
Sep 04 08:05:03.356 INFO kablam! stack backtrace:
Sep 04 08:05:03.356 INFO kablam!    0:     0x55e6e6a97bde - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h111d29d01150185b
Sep 04 08:05:03.356 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Sep 04 08:05:03.356 INFO kablam!    1:     0x55e6e6a86d06 - std::sys_common::backtrace::print::hadf06a7055c792d8
Sep 04 08:05:03.356 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Sep 04 08:05:03.356 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Sep 04 08:05:03.356 INFO kablam!    2:     0x55e6e6a8508d - std::panicking::default_hook::{{closure}}::h9a80afcbd09a0855
Sep 04 08:05:03.356 INFO kablam!                                at libstd/panicking.rs:211
Sep 04 08:05:03.356 INFO kablam!    3:     0x55e6e6a84e00 - std::panicking::default_hook::hb91edb2af522cf99
Sep 04 08:05:03.357 INFO kablam!                                at libstd/panicking.rs:227
Sep 04 08:05:03.357 INFO kablam!    4:     0x55e6e6a856fc - std::panicking::rust_panic_with_hook::h9ee76a5950b8fa2f
Sep 04 08:05:03.357 INFO kablam!                                at libstd/panicking.rs:477
Sep 04 08:05:03.357 INFO kablam!    5:     0x55e6e69eceef - std::panicking::begin_panic::h39659cd60d516ea5
Sep 04 08:05:03.357 INFO kablam!                                at /checkout/src/libstd/panicking.rs:411
Sep 04 08:05:03.357 INFO kablam!    6:     0x55e6e64ac364 - build_script_build::main::h5e949c81022c64a2
Sep 04 08:05:03.357 INFO kablam!                                at /source/build.rs:59
Sep 04 08:05:03.357 INFO kablam!    7:     0x55e6e64ad48f - std::rt::lang_start::{{closure}}::h5d6a68667f11f840
Sep 04 08:05:03.357 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Sep 04 08:05:03.357 INFO kablam!    8:     0x55e6e6a85192 - std::panicking::try::do_call::h4afdf37123a75d49
Sep 04 08:05:03.357 INFO kablam!                                at libstd/rt.rs:59
Sep 04 08:05:03.357 INFO kablam!                                at libstd/panicking.rs:310
Sep 04 08:05:03.357 INFO kablam!    9:     0x55e6e6aaa589 - __rust_maybe_catch_panic
Sep 04 08:05:03.357 INFO kablam!                                at libpanic_unwind/lib.rs:103
Sep 04 08:05:03.357 INFO kablam!   10:     0x55e6e6a92565 - std::rt::lang_start_internal::h10ef3984d1c2171a
Sep 04 08:05:03.357 INFO kablam!                                at libstd/panicking.rs:289
Sep 04 08:05:03.357 INFO kablam!                                at libstd/panic.rs:392
Sep 04 08:05:03.357 INFO kablam!                                at libstd/rt.rs:58
Sep 04 08:05:03.357 INFO kablam!   11:     0x55e6e64ad467 - std::rt::lang_start::hbea5dc9dd4744f7a
Sep 04 08:05:03.357 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Sep 04 08:05:03.357 INFO kablam!   12:     0x55e6e64ac829 - main
Sep 04 08:05:03.357 INFO kablam!   13:     0x7f47b235782f - __libc_start_main
Sep 04 08:05:03.358 INFO kablam!   14:     0x55e6e64aba18 - _start
Sep 04 08:05:03.358 INFO kablam!   15:                0x0 - <unknown>
Sep 04 08:05:03.358 INFO kablam! 
Sep 04 08:05:03.358 INFO kablam! su: No module specific data is present
Sep 04 08:05:03.815 INFO running `"docker" "rm" "-f" "a936decafe8e0e0aebe13924520efbc12c041df6ef2fc67c7424977444187b09"`
Sep 04 08:05:03.916 INFO blam! a936decafe8e0e0aebe13924520efbc12c041df6ef2fc67c7424977444187b09