Sep 02 00:47:00.612 INFO checking chemfiles-sys-0.5.0 against master#1114ab684fbad001c4e580326d8eb4d8c4e917d3 for pr-53831
Sep 02 00:47:00.612 INFO running: cargo +1114ab684fbad001c4e580326d8eb4d8c4e917d3-alt check --frozen --all --all-targets
Sep 02 00:47:00.613 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-2/pr-53831/master#1114ab684fbad001c4e580326d8eb4d8c4e917d3:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53831/worker-2/master#1114ab684fbad001c4e580326d8eb4d8c4e917d3:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +1114ab684fbad001c4e580326d8eb4d8c4e917d3-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "2G" "crater"`
Sep 02 00:47:00.754 INFO blam! cd2156c6f320b5c958d6c562b9838cc5796fc2a0427d8fef0c5b778294f48d7a
Sep 02 00:47:00.756 INFO running `"docker" "start" "-a" "cd2156c6f320b5c958d6c562b9838cc5796fc2a0427d8fef0c5b778294f48d7a"`
Sep 02 00:47:01.269 INFO kablam!    Compiling chemfiles-sys v0.5.0 (file:///source)
Sep 02 00:47:05.891 INFO kablam! error: failed to run custom build command for `chemfiles-sys v0.5.0 (file:///source)`
Sep 02 00:47:05.891 INFO kablam! process didn't exit successfully: `/target/debug/build/chemfiles-sys-9faba8596a5b917e/build-script-build` (exit code: 101)
Sep 02 00:47:05.891 INFO kablam! --- stdout
Sep 02 00:47:05.891 INFO kablam! running: "cmake" "/source/." "-DBUILD_SHARED_LIBS=OFF" "-DCMAKE_POSITION_INDEPENDENT_CODE=ON" "-DCMAKE_INSTALL_PREFIX=/target/debug/build/chemfiles-sys-818f38fa8ccdb8a0/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_BUILD_TYPE=Debug"
Sep 02 00:47:05.891 INFO kablam! -- The C compiler identification is GNU 5.4.0
Sep 02 00:47:05.891 INFO kablam! -- The CXX compiler identification is GNU 5.4.0
Sep 02 00:47:05.891 INFO kablam! -- Check for working C compiler: /usr/bin/cc
Sep 02 00:47:05.891 INFO kablam! -- Check for working C compiler: /usr/bin/cc -- works
Sep 02 00:47:05.891 INFO kablam! -- Detecting C compiler ABI info
Sep 02 00:47:05.891 INFO kablam! -- Detecting C compiler ABI info - done
Sep 02 00:47:05.891 INFO kablam! -- Detecting C compile features
Sep 02 00:47:05.891 INFO kablam! -- Detecting C compile features - done
Sep 02 00:47:05.891 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++
Sep 02 00:47:05.891 INFO kablam! -- Check for working CXX compiler: /usr/bin/c++ -- works
Sep 02 00:47:05.891 INFO kablam! -- Detecting CXX compiler ABI info
Sep 02 00:47:05.891 INFO kablam! -- Detecting CXX compiler ABI info - done
Sep 02 00:47:05.891 INFO kablam! -- Detecting CXX compile features
Sep 02 00:47:05.891 INFO kablam! -- Detecting CXX compile features - done
Sep 02 00:47:05.891 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11
Sep 02 00:47:05.891 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX11 - Success
Sep 02 00:47:05.891 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X
Sep 02 00:47:05.891 INFO kablam! -- Performing Test COMPILER_SUPPORTS_CXX0X - Success
Sep 02 00:47:05.891 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall
Sep 02 00:47:05.891 INFO kablam! -- Performing Test CXX_SUPPORTS-Wall - Success
Sep 02 00:47:05.891 INFO kablam! -- Performing Test CC_SUPPORTS-Wall
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wall - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wuninitialized - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wuninitialized - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wconversion - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wconversion - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-conversion - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-conversion - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsign-promo - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsign-promo - Failed
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-override - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-override - Failed
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wsuggest-final-types - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wsuggest-final-types - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wpedantic - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wpedantic - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-pedantic - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-pedantic - Success
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdocumentation - Failed
Sep 02 00:47:05.892 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wdocumentation - Failed
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wdeprecated - Success
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wdeprecated - Success
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wextra-semi - Failed
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wextra-semi - Failed
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CXX_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression
Sep 02 00:47:05.893 INFO kablam! -- Performing Test CC_SUPPORTS-Wno-potentially-evaluated-expression - Failed
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_SUPPORTS_C99 - Success
Sep 02 00:47:05.893 INFO kablam! -- Found NetCDF: /usr/lib/x86_64-linux-gnu/libnetcdf.so  
Sep 02 00:47:05.893 INFO kablam! -- Found NetCDF library. Consider activating the associated format with -DENABLE_NETCDF=ON
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR
Sep 02 00:47:05.893 INFO kablam! -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
Sep 02 00:47:05.893 INFO kablam! -- Configuring incomplete, errors occurred!
Sep 02 00:47:05.893 INFO kablam! See also "/target/debug/build/chemfiles-sys-818f38fa8ccdb8a0/out/build/CMakeFiles/CMakeOutput.log".
Sep 02 00:47:05.893 INFO kablam! See also "/target/debug/build/chemfiles-sys-818f38fa8ccdb8a0/out/build/CMakeFiles/CMakeError.log".
Sep 02 00:47:05.893 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam! --- stderr
Sep 02 00:47:05.894 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/exports.hpp.tmp
Sep 02 00:47:05.894 INFO kablam! CMake Error: : System Error: Read-only file system
Sep 02 00:47:05.894 INFO kablam! CMake Error at /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:362 (configure_file):
Sep 02 00:47:05.894 INFO kablam!   configure_file Problem configuring file
Sep 02 00:47:05.894 INFO kablam! Call Stack (most recent call first):
Sep 02 00:47:05.894 INFO kablam!   /usr/share/cmake-3.5/Modules/GenerateExportHeader.cmake:378 (_do_generate_export_header)
Sep 02 00:47:05.894 INFO kablam!   chemfiles/CMakeLists.txt:71 (generate_export_header)
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam! CMake Error: Could not open file for write in copy operation /source/chemfiles/include/chemfiles/config.hpp.tmp
Sep 02 00:47:05.894 INFO kablam! CMake Error: : System Error: Read-only file system
Sep 02 00:47:05.894 INFO kablam! CMake Error at chemfiles/CMakeLists.txt:77 (configure_file):
Sep 02 00:47:05.894 INFO kablam!   configure_file Problem configuring file
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam! CMake Warning (dev) in CMakeLists.txt:
Sep 02 00:47:05.894 INFO kablam!   No cmake_minimum_required command is present.  A line of code such as
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam!     cmake_minimum_required(VERSION 3.5)
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.894 INFO kablam!   should be added at the top of the file.  The version specified may be lower
Sep 02 00:47:05.894 INFO kablam!   if you wish to support older CMake versions for this project.  For more
Sep 02 00:47:05.894 INFO kablam!   information run "cmake --help-policy CMP0000".
Sep 02 00:47:05.894 INFO kablam! This warning is for project developers.  Use -Wno-dev to suppress it.
Sep 02 00:47:05.894 INFO kablam! 
Sep 02 00:47:05.895 INFO kablam! thread 'main' panicked at '
Sep 02 00:47:05.895 INFO kablam! command did not execute successfully, got: exit code: 1
Sep 02 00:47:05.895 INFO kablam! 
Sep 02 00:47:05.895 INFO kablam! build script failed, must exit now', /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.33/src/lib.rs:773:5
Sep 02 00:47:05.895 INFO kablam! stack backtrace:
Sep 02 00:47:05.895 INFO kablam!    0:     0x558a6c0a689e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::ha200f2cd684ebd49
Sep 02 00:47:05.895 INFO kablam!                                at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49
Sep 02 00:47:05.895 INFO kablam!    1:     0x558a6c0964e6 - std::sys_common::backtrace::print::hfe3d4e47b4c8e48c
Sep 02 00:47:05.895 INFO kablam!                                at libstd/sys_common/backtrace.rs:71
Sep 02 00:47:05.895 INFO kablam!                                at libstd/sys_common/backtrace.rs:59
Sep 02 00:47:05.895 INFO kablam!    2:     0x558a6c094dad - std::panicking::default_hook::{{closure}}::hf56af31102a42941
Sep 02 00:47:05.895 INFO kablam!                                at libstd/panicking.rs:211
Sep 02 00:47:05.895 INFO kablam!    3:     0x558a6c094b20 - std::panicking::default_hook::ha51b5d4eb7ec526d
Sep 02 00:47:05.895 INFO kablam!                                at libstd/panicking.rs:227
Sep 02 00:47:05.895 INFO kablam!    4:     0x558a6c0953bc - std::panicking::rust_panic_with_hook::hd585483f9daec810
Sep 02 00:47:05.895 INFO kablam!                                at libstd/panicking.rs:477
Sep 02 00:47:05.895 INFO kablam!    5:     0x558a6c094fb9 - std::panicking::continue_panic_fmt::h918075cde557b461
Sep 02 00:47:05.895 INFO kablam!                                at libstd/panicking.rs:391
Sep 02 00:47:05.895 INFO kablam!    6:     0x558a6c094f1d - std::panicking::begin_panic_fmt::h5e5c6b72bacdc05a
Sep 02 00:47:05.895 INFO kablam!                                at libstd/panicking.rs:346
Sep 02 00:47:05.895 INFO kablam!    7:     0x558a6c032da1 - cmake::fail::hc896779924d2595c
Sep 02 00:47:05.895 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.33/src/lib.rs:773
Sep 02 00:47:05.895 INFO kablam!    8:     0x558a6c0326e0 - cmake::run::hfee576669e7999ed
Sep 02 00:47:05.895 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.33/src/lib.rs:754
Sep 02 00:47:05.895 INFO kablam!    9:     0x558a6c02e26e - cmake::Config::build::h499fc81a2c78d1b5
Sep 02 00:47:05.896 INFO kablam!                                at /cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.33/src/lib.rs:606
Sep 02 00:47:05.896 INFO kablam!   10:     0x558a6c02b035 - build_script_build::main::h00fd8587812b7fed
Sep 02 00:47:05.896 INFO kablam!                                at /source/build.rs:18
Sep 02 00:47:05.896 INFO kablam!   11:     0x558a6c029b5f - std::rt::lang_start::{{closure}}::h9cdadf07a5b6e207
Sep 02 00:47:05.896 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Sep 02 00:47:05.896 INFO kablam!   12:     0x558a6c094e52 - std::panicking::try::do_call::hea63f5620482e896
Sep 02 00:47:05.896 INFO kablam!                                at libstd/rt.rs:59
Sep 02 00:47:05.896 INFO kablam!                                at libstd/panicking.rs:310
Sep 02 00:47:05.896 INFO kablam!   13:     0x558a6c0b8639 - __rust_maybe_catch_panic
Sep 02 00:47:05.896 INFO kablam!                                at libpanic_unwind/lib.rs:103
Sep 02 00:47:05.896 INFO kablam!   14:     0x558a6c0a1595 - std::rt::lang_start_internal::hfd6e69240f0360f8
Sep 02 00:47:05.896 INFO kablam!                                at libstd/panicking.rs:289
Sep 02 00:47:05.896 INFO kablam!                                at libstd/panic.rs:392
Sep 02 00:47:05.896 INFO kablam!                                at libstd/rt.rs:58
Sep 02 00:47:05.896 INFO kablam!   15:     0x558a6c029b37 - std::rt::lang_start::hd6c0046e48611a02
Sep 02 00:47:05.896 INFO kablam!                                at /checkout/src/libstd/rt.rs:74
Sep 02 00:47:05.896 INFO kablam!   16:     0x558a6c02b979 - main
Sep 02 00:47:05.896 INFO kablam!   17:     0x7f82b79e982f - __libc_start_main
Sep 02 00:47:05.896 INFO kablam!   18:     0x558a6c0299d8 - _start
Sep 02 00:47:05.896 INFO kablam!   19:                0x0 - <unknown>
Sep 02 00:47:05.896 INFO kablam! 
Sep 02 00:47:05.896 INFO kablam! su: No module specific data is present
Sep 02 00:47:06.297 INFO running `"docker" "rm" "-f" "cd2156c6f320b5c958d6c562b9838cc5796fc2a0427d8fef0c5b778294f48d7a"`
Sep 02 00:47:06.381 INFO blam! cd2156c6f320b5c958d6c562b9838cc5796fc2a0427d8fef0c5b778294f48d7a