Aug 30 04:30:50.104 INFO checking rust-htslib-0.21.0 against try#bc5a74802bb3ffc82f51ef04bca58d64220124c4 for pr-53699 Aug 30 04:30:50.104 INFO running: cargo +bc5a74802bb3ffc82f51ef04bca58d64220124c4-alt check --frozen --all --all-targets Aug 30 04:30:50.104 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-3/pr-53699/try#bc5a74802bb3ffc82f51ef04bca58d64220124c4:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53699/worker-3/try#bc5a74802bb3ffc82f51ef04bca58d64220124c4:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +bc5a74802bb3ffc82f51ef04bca58d64220124c4-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "2G" "crater"` Aug 30 04:30:50.261 INFO blam! e7c7d536b19e085207b7eaa90a6b314074425a89e638dcdfb7a362403d07f6e3 Aug 30 04:30:50.267 INFO running `"docker" "start" "-a" "e7c7d536b19e085207b7eaa90a6b314074425a89e638dcdfb7a362403d07f6e3"` Aug 30 04:30:50.964 INFO kablam! Checking linear-map v1.2.0 Aug 30 04:30:50.965 INFO kablam! Checking ieee754 v0.2.2 Aug 30 04:30:50.965 INFO kablam! Checking custom_derive v0.1.7 Aug 30 04:30:50.969 INFO kablam! Compiling fs-utils v1.1.0 Aug 30 04:30:50.972 INFO kablam! Compiling newtype_derive v0.1.6 Aug 30 04:30:50.976 INFO kablam! Checking bio-types v0.2.0 Aug 30 04:30:52.487 INFO kablam! Compiling rust-htslib v0.21.0 (file:///source) Aug 30 04:31:16.669 INFO kablam! error: failed to run custom build command for `rust-htslib v0.21.0 (file:///source)` Aug 30 04:31:16.669 INFO kablam! process didn't exit successfully: `/target/debug/build/rust-htslib-cd19b717247b324f/build-script-build` (exit code: 101) Aug 30 04:31:16.669 INFO kablam! --- stdout Aug 30 04:31:16.669 INFO kablam! echo '/* Default config.h generated by Makefile */' > config.h Aug 30 04:31:16.669 INFO kablam! echo '#define HAVE_LIBBZ2 1' >> config.h Aug 30 04:31:16.669 INFO kablam! echo '#define HAVE_LIBLZMA 1' >> config.h Aug 30 04:31:16.669 INFO kablam! echo '#define HAVE_FSEEKO 1' >> config.h Aug 30 04:31:16.669 INFO kablam! echo '#define HAVE_DRAND48 1' >> config.h Aug 30 04:31:16.669 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kfunc.o kfunc.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o knetfile.o knetfile.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o kstring.o kstring.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bcf_sr_sort.o bcf_sr_sort.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o bgzf.o bgzf.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o errmod.o errmod.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o faidx.o faidx.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile.o hfile.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hfile_net.o hfile_net.c Aug 30 04:31:16.670 INFO kablam! echo '#define HTS_VERSION "1.6"' > version.h Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts.o hts.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o hts_os.o hts_os.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o md5.o md5.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o multipart.o multipart.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o probaln.o probaln.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o realn.o realn.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o regidx.o regidx.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o sam.o sam.c Aug 30 04:31:16.670 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o synced_bcf_reader.o synced_bcf_reader.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf_sweep.o vcf_sweep.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o tbx.o tbx.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o textutils.o textutils.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o thread_pool.o thread_pool.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcf.o vcf.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o vcfutils.o vcfutils.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_codecs.o cram/cram_codecs.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_decode.o cram/cram_decode.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_encode.o cram/cram_encode.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_external.o cram/cram_external.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_index.o cram/cram_index.c Aug 30 04:31:16.671 INFO kablam! gcc -g -Wall -O2 -fPIC -I. -c -o cram/cram_io.o cram/cram_io.c Aug 30 04:31:16.671 INFO kablam! Makefile:120: recipe for target 'cram/cram_io.o' failed Aug 30 04:31:16.671 INFO kablam! Aug 30 04:31:16.671 INFO kablam! --- stderr Aug 30 04:31:16.671 INFO kablam! cram/cram_io.c:57:19: fatal error: bzlib.h: No such file or directory Aug 30 04:31:16.671 INFO kablam! compilation terminated. Aug 30 04:31:16.672 INFO kablam! make: *** [cram/cram_io.o] Error 1 Aug 30 04:31:16.672 INFO kablam! thread 'main' panicked at 'failed to build htslib', build.rs:59:9 Aug 30 04:31:16.672 INFO kablam! stack backtrace: Aug 30 04:31:16.672 INFO kablam! 0: 0x555f5db1f55e - std::sys::unix::backtrace::tracing::imp::unwind_backtrace::h1e2c8a158f82a771 Aug 30 04:31:16.672 INFO kablam! at libstd/sys/unix/backtrace/tracing/gcc_s.rs:49 Aug 30 04:31:16.672 INFO kablam! 1: 0x555f5db0e6d6 - std::sys_common::backtrace::print::h20354399b6248400 Aug 30 04:31:16.672 INFO kablam! at libstd/sys_common/backtrace.rs:71 Aug 30 04:31:16.672 INFO kablam! at libstd/sys_common/backtrace.rs:59 Aug 30 04:31:16.672 INFO kablam! 2: 0x555f5db0ca0d - std::panicking::default_hook::{{closure}}::h27a2dbd1311dde15 Aug 30 04:31:16.672 INFO kablam! at libstd/panicking.rs:211 Aug 30 04:31:16.672 INFO kablam! 3: 0x555f5db0c780 - std::panicking::default_hook::hbb219006758dbd2e Aug 30 04:31:16.672 INFO kablam! at libstd/panicking.rs:227 Aug 30 04:31:16.672 INFO kablam! 4: 0x555f5db0d07c - std::panicking::rust_panic_with_hook::h54ff8ddef2df49c5 Aug 30 04:31:16.672 INFO kablam! at libstd/panicking.rs:476 Aug 30 04:31:16.672 INFO kablam! 5: 0x555f5d8a121f - std::panicking::begin_panic::h3e2376c977f716fd Aug 30 04:31:16.672 INFO kablam! at /checkout/src/libstd/panicking.rs:410 Aug 30 04:31:16.672 INFO kablam! 6: 0x555f5d52e518 - build_script_build::main::hade1aa3274457952 Aug 30 04:31:16.672 INFO kablam! at /source/build.rs:59 Aug 30 04:31:16.673 INFO kablam! 7: 0x555f5d52f64f - std::rt::lang_start::{{closure}}::h283f587b529d762d Aug 30 04:31:16.673 INFO kablam! at /checkout/src/libstd/rt.rs:74 Aug 30 04:31:16.673 INFO kablam! 8: 0x555f5db0cb12 - std::panicking::try::do_call::he8e7cb1df85bccd2 Aug 30 04:31:16.673 INFO kablam! at libstd/rt.rs:59 Aug 30 04:31:16.673 INFO kablam! at libstd/panicking.rs:310 Aug 30 04:31:16.673 INFO kablam! 9: 0x555f5db311b9 - __rust_maybe_catch_panic Aug 30 04:31:16.673 INFO kablam! at libpanic_unwind/lib.rs:102 Aug 30 04:31:16.673 INFO kablam! 10: 0x555f5db19ed5 - std::rt::lang_start_internal::h3de9d74037683c14 Aug 30 04:31:16.673 INFO kablam! at libstd/panicking.rs:289 Aug 30 04:31:16.673 INFO kablam! at libstd/panic.rs:392 Aug 30 04:31:16.673 INFO kablam! at libstd/rt.rs:58 Aug 30 04:31:16.673 INFO kablam! 11: 0x555f5d52f627 - std::rt::lang_start::h8969374f837ee53b Aug 30 04:31:16.673 INFO kablam! at /checkout/src/libstd/rt.rs:74 Aug 30 04:31:16.673 INFO kablam! 12: 0x555f5d52e9e9 - main Aug 30 04:31:16.673 INFO kablam! 13: 0x7f2870fe082f - __libc_start_main Aug 30 04:31:16.673 INFO kablam! 14: 0x555f5d52db98 - _start Aug 30 04:31:16.673 INFO kablam! 15: 0x0 - Aug 30 04:31:16.673 INFO kablam! Aug 30 04:31:16.674 INFO kablam! su: No module specific data is present Aug 30 04:31:17.043 INFO running `"docker" "rm" "-f" "e7c7d536b19e085207b7eaa90a6b314074425a89e638dcdfb7a362403d07f6e3"` Aug 30 04:31:17.171 INFO blam! e7c7d536b19e085207b7eaa90a6b314074425a89e638dcdfb7a362403d07f6e3