Aug 29 19:41:28.717 INFO checking TuBieJun/consensus against try#bc5a74802bb3ffc82f51ef04bca58d64220124c4 for pr-53699 Aug 29 19:41:28.717 INFO running: cargo +bc5a74802bb3ffc82f51ef04bca58d64220124c4-alt check --frozen --all --all-targets Aug 29 19:41:28.718 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-1/pr-53699/try#bc5a74802bb3ffc82f51ef04bca58d64220124c4:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53699/worker-1/try#bc5a74802bb3ffc82f51ef04bca58d64220124c4:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +bc5a74802bb3ffc82f51ef04bca58d64220124c4-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-m" "2G" "crater"` Aug 29 19:41:28.933 INFO blam! 07886503f53a6c9ae8b253ca56b7799227abdcf571e6b4060cdb23103e290339 Aug 29 19:41:28.935 INFO running `"docker" "start" "-a" "07886503f53a6c9ae8b253ca56b7799227abdcf571e6b4060cdb23103e290339"` Aug 29 19:41:29.894 INFO kablam! Checking either v1.4.0 Aug 29 19:41:29.902 INFO kablam! Checking custom_derive v0.1.7 Aug 29 19:41:29.903 INFO kablam! Checking ieee754 v0.2.2 Aug 29 19:41:29.918 INFO kablam! Compiling fs-utils v1.0.0 Aug 29 19:41:29.943 INFO kablam! Compiling newtype_derive v0.1.6 Aug 29 19:41:30.947 INFO kablam! Checking itertools v0.6.5 Aug 29 19:41:32.094 INFO kablam! Compiling rust-htslib v0.15.0 Aug 29 19:42:12.633 INFO kablam! Checking consensus v0.1.0 (file:///source) Aug 29 19:42:13.364 INFO kablam! warning: unused import: `std::env` Aug 29 19:42:13.364 INFO kablam! --> src/main.rs:12:5 Aug 29 19:42:13.364 INFO kablam! | Aug 29 19:42:13.364 INFO kablam! 12 | use std::env; Aug 29 19:42:13.364 INFO kablam! | ^^^^^^^^ Aug 29 19:42:13.364 INFO kablam! | Aug 29 19:42:13.364 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 29 19:42:13.364 INFO kablam! Aug 29 19:42:13.364 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Aug 29 19:42:13.364 INFO kablam! --> src/main.rs:16:5 Aug 29 19:42:13.364 INFO kablam! | Aug 29 19:42:13.364 INFO kablam! 16 | use rust_htslib::prelude::*; Aug 29 19:42:13.364 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.364 INFO kablam! Aug 29 19:42:13.364 INFO kablam! warning: unused import: `std::io` Aug 29 19:42:13.364 INFO kablam! --> src/main.rs:21:5 Aug 29 19:42:13.364 INFO kablam! | Aug 29 19:42:13.364 INFO kablam! 21 | use std::io; Aug 29 19:42:13.364 INFO kablam! | ^^^^^^^ Aug 29 19:42:13.364 INFO kablam! Aug 29 19:42:13.364 INFO kablam! warning: unused import: `PathBuf` Aug 29 19:42:13.364 INFO kablam! --> src/main.rs:25:23 Aug 29 19:42:13.364 INFO kablam! | Aug 29 19:42:13.365 INFO kablam! 25 | use std::path::{Path, PathBuf}; Aug 29 19:42:13.365 INFO kablam! | ^^^^^^^ Aug 29 19:42:13.365 INFO kablam! Aug 29 19:42:13.365 INFO kablam! warning: unused import: `SubCommand` Aug 29 19:42:13.365 INFO kablam! --> src/main.rs:26:22 Aug 29 19:42:13.365 INFO kablam! | Aug 29 19:42:13.365 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Aug 29 19:42:13.365 INFO kablam! | ^^^^^^^^^^ Aug 29 19:42:13.365 INFO kablam! Aug 29 19:42:13.365 INFO kablam! warning: unnecessary parentheses around `if` condition Aug 29 19:42:13.365 INFO kablam! --> src/main.rs:218:20 Aug 29 19:42:13.365 INFO kablam! | Aug 29 19:42:13.365 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Aug 29 19:42:13.365 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 29 19:42:13.365 INFO kablam! | Aug 29 19:42:13.365 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 29 19:42:13.365 INFO kablam! Aug 29 19:42:13.365 INFO kablam! warning: unnecessary parentheses around `if` condition Aug 29 19:42:13.365 INFO kablam! --> src/main.rs:239:16 Aug 29 19:42:13.365 INFO kablam! | Aug 29 19:42:13.365 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Aug 29 19:42:13.365 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 29 19:42:13.365 INFO kablam! Aug 29 19:42:13.398 INFO kablam! warning: unused import: `std::env` Aug 29 19:42:13.398 INFO kablam! --> src/main.rs:12:5 Aug 29 19:42:13.398 INFO kablam! | Aug 29 19:42:13.398 INFO kablam! 12 | use std::env; Aug 29 19:42:13.398 INFO kablam! | ^^^^^^^^ Aug 29 19:42:13.398 INFO kablam! | Aug 29 19:42:13.398 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 29 19:42:13.398 INFO kablam! Aug 29 19:42:13.399 INFO kablam! warning: unused import: `rust_htslib::prelude::*` Aug 29 19:42:13.399 INFO kablam! --> src/main.rs:16:5 Aug 29 19:42:13.399 INFO kablam! | Aug 29 19:42:13.399 INFO kablam! 16 | use rust_htslib::prelude::*; Aug 29 19:42:13.399 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.399 INFO kablam! Aug 29 19:42:13.399 INFO kablam! warning: unused import: `std::io` Aug 29 19:42:13.399 INFO kablam! --> src/main.rs:21:5 Aug 29 19:42:13.399 INFO kablam! | Aug 29 19:42:13.399 INFO kablam! 21 | use std::io; Aug 29 19:42:13.399 INFO kablam! | ^^^^^^^ Aug 29 19:42:13.399 INFO kablam! Aug 29 19:42:13.399 INFO kablam! warning: unused import: `PathBuf` Aug 29 19:42:13.399 INFO kablam! --> src/main.rs:25:23 Aug 29 19:42:13.399 INFO kablam! | Aug 29 19:42:13.399 INFO kablam! 25 | use std::path::{Path, PathBuf}; Aug 29 19:42:13.399 INFO kablam! | ^^^^^^^ Aug 29 19:42:13.399 INFO kablam! Aug 29 19:42:13.399 INFO kablam! warning: unused import: `SubCommand` Aug 29 19:42:13.399 INFO kablam! --> src/main.rs:26:22 Aug 29 19:42:13.399 INFO kablam! | Aug 29 19:42:13.399 INFO kablam! 26 | use clap::{Arg, App, SubCommand}; Aug 29 19:42:13.399 INFO kablam! | ^^^^^^^^^^ Aug 29 19:42:13.400 INFO kablam! Aug 29 19:42:13.403 INFO kablam! warning: unnecessary parentheses around `if` condition Aug 29 19:42:13.403 INFO kablam! --> src/main.rs:218:20 Aug 29 19:42:13.403 INFO kablam! | Aug 29 19:42:13.403 INFO kablam! 218 | if (num_position[&(i as usize)] == num_position[&(0 as usize)]) { Aug 29 19:42:13.403 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 29 19:42:13.403 INFO kablam! | Aug 29 19:42:13.403 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 29 19:42:13.403 INFO kablam! Aug 29 19:42:13.403 INFO kablam! warning: unnecessary parentheses around `if` condition Aug 29 19:42:13.403 INFO kablam! --> src/main.rs:239:16 Aug 29 19:42:13.403 INFO kablam! | Aug 29 19:42:13.403 INFO kablam! 239 | if (baseEach_percent_record.len() > 0) { Aug 29 19:42:13.404 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 29 19:42:13.404 INFO kablam! Aug 29 19:42:13.736 INFO kablam! warning: unused import: `std::io::prelude` Aug 29 19:42:13.736 INFO kablam! --> src/main.rs:22:5 Aug 29 19:42:13.736 INFO kablam! | Aug 29 19:42:13.736 INFO kablam! 22 | use std::io::prelude::*; Aug 29 19:42:13.736 INFO kablam! | ^^^^^^^^^^^^^^^^ Aug 29 19:42:13.736 INFO kablam! Aug 29 19:42:13.744 INFO kablam! warning: unused import: `std::io::prelude` Aug 29 19:42:13.744 INFO kablam! --> src/main.rs:22:5 Aug 29 19:42:13.744 INFO kablam! | Aug 29 19:42:13.744 INFO kablam! 22 | use std::io::prelude::*; Aug 29 19:42:13.745 INFO kablam! | ^^^^^^^^^^^^^^^^ Aug 29 19:42:13.745 INFO kablam! Aug 29 19:42:13.807 INFO kablam! warning: unused variable: `consensus_base` Aug 29 19:42:13.807 INFO kablam! --> src/main.rs:139:9 Aug 29 19:42:13.807 INFO kablam! | Aug 29 19:42:13.807 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Aug 29 19:42:13.807 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Aug 29 19:42:13.807 INFO kablam! | Aug 29 19:42:13.807 INFO kablam! = note: #[warn(unused_variables)] on by default Aug 29 19:42:13.808 INFO kablam! Aug 29 19:42:13.808 INFO kablam! warning: unused variable: `consensus_source_reads` Aug 29 19:42:13.808 INFO kablam! --> src/main.rs:144:13 Aug 29 19:42:13.808 INFO kablam! | Aug 29 19:42:13.808 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Aug 29 19:42:13.808 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Aug 29 19:42:13.808 INFO kablam! Aug 29 19:42:13.808 INFO kablam! warning: unused variable: `chrom` Aug 29 19:42:13.809 INFO kablam! --> src/main.rs:283:121 Aug 29 19:42:13.809 INFO kablam! | Aug 29 19:42:13.809 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Aug 29 19:42:13.809 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Aug 29 19:42:13.809 INFO kablam! Aug 29 19:42:13.809 INFO kablam! warning: value assigned to `new_seq_b` is never read Aug 29 19:42:13.809 INFO kablam! --> src/main.rs:370:21 Aug 29 19:42:13.809 INFO kablam! | Aug 29 19:42:13.809 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Aug 29 19:42:13.809 INFO kablam! | ^^^^^^^^^ Aug 29 19:42:13.809 INFO kablam! | Aug 29 19:42:13.810 INFO kablam! = note: #[warn(unused_assignments)] on by default Aug 29 19:42:13.810 INFO kablam! Aug 29 19:42:13.819 INFO kablam! warning: unused variable: `consensus_base` Aug 29 19:42:13.819 INFO kablam! --> src/main.rs:139:9 Aug 29 19:42:13.819 INFO kablam! | Aug 29 19:42:13.819 INFO kablam! 139 | let consensus_base:Vec = Vec::new(); Aug 29 19:42:13.819 INFO kablam! | ^^^^^^^^^^^^^^ help: consider using `_consensus_base` instead Aug 29 19:42:13.819 INFO kablam! | Aug 29 19:42:13.819 INFO kablam! = note: #[warn(unused_variables)] on by default Aug 29 19:42:13.819 INFO kablam! Aug 29 19:42:13.819 INFO kablam! warning: unused variable: `consensus_source_reads` Aug 29 19:42:13.819 INFO kablam! --> src/main.rs:144:13 Aug 29 19:42:13.819 INFO kablam! | Aug 29 19:42:13.819 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Aug 29 19:42:13.819 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^ help: consider using `_consensus_source_reads` instead Aug 29 19:42:13.819 INFO kablam! Aug 29 19:42:13.820 INFO kablam! warning: unused variable: `chrom` Aug 29 19:42:13.820 INFO kablam! --> src/main.rs:283:121 Aug 29 19:42:13.820 INFO kablam! | Aug 29 19:42:13.820 INFO kablam! 283 | fn block_consensus(pd:& mut HashMap, Vec, Vec, CigarStringView, bool)>>>, chrom: i32, use_check:bool, min_t_s: &u32, min_t_p: &f32, o_r1: & mut File, o_r2: & mut File, need_trim:bool) { Aug 29 19:42:13.820 INFO kablam! | ^^^^^ help: consider using `_chrom` instead Aug 29 19:42:13.820 INFO kablam! Aug 29 19:42:13.821 INFO kablam! warning: value assigned to `new_seq_b` is never read Aug 29 19:42:13.821 INFO kablam! --> src/main.rs:370:21 Aug 29 19:42:13.821 INFO kablam! | Aug 29 19:42:13.821 INFO kablam! 370 | let mut new_seq_b:Vec = Vec::new(); Aug 29 19:42:13.821 INFO kablam! | ^^^^^^^^^ Aug 29 19:42:13.821 INFO kablam! | Aug 29 19:42:13.821 INFO kablam! = note: #[warn(unused_assignments)] on by default Aug 29 19:42:13.821 INFO kablam! Aug 29 19:42:13.827 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.827 INFO kablam! --> src/main.rs:74:9 Aug 29 19:42:13.827 INFO kablam! | Aug 29 19:42:13.827 INFO kablam! 74 | let mut pair; Aug 29 19:42:13.827 INFO kablam! | ----^^^^ Aug 29 19:42:13.827 INFO kablam! | | Aug 29 19:42:13.827 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.827 INFO kablam! | Aug 29 19:42:13.827 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 29 19:42:13.828 INFO kablam! Aug 29 19:42:13.828 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.828 INFO kablam! --> src/main.rs:75:9 Aug 29 19:42:13.828 INFO kablam! | Aug 29 19:42:13.828 INFO kablam! 75 | let mut strand; Aug 29 19:42:13.828 INFO kablam! | ----^^^^^^ Aug 29 19:42:13.828 INFO kablam! | | Aug 29 19:42:13.828 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.828 INFO kablam! Aug 29 19:42:13.829 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.829 INFO kablam! --> src/main.rs:76:9 Aug 29 19:42:13.829 INFO kablam! | Aug 29 19:42:13.829 INFO kablam! 76 | let mut aln_pos; Aug 29 19:42:13.829 INFO kablam! | ----^^^^^^^ Aug 29 19:42:13.829 INFO kablam! | | Aug 29 19:42:13.829 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.829 INFO kablam! Aug 29 19:42:13.839 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.839 INFO kablam! --> src/main.rs:74:9 Aug 29 19:42:13.839 INFO kablam! | Aug 29 19:42:13.839 INFO kablam! 74 | let mut pair; Aug 29 19:42:13.839 INFO kablam! | ----^^^^ Aug 29 19:42:13.839 INFO kablam! | | Aug 29 19:42:13.840 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.840 INFO kablam! | Aug 29 19:42:13.840 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 29 19:42:13.840 INFO kablam! Aug 29 19:42:13.840 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.840 INFO kablam! --> src/main.rs:75:9 Aug 29 19:42:13.840 INFO kablam! | Aug 29 19:42:13.840 INFO kablam! 75 | let mut strand; Aug 29 19:42:13.840 INFO kablam! | ----^^^^^^ Aug 29 19:42:13.840 INFO kablam! | | Aug 29 19:42:13.840 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.840 INFO kablam! Aug 29 19:42:13.840 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.840 INFO kablam! --> src/main.rs:76:9 Aug 29 19:42:13.840 INFO kablam! | Aug 29 19:42:13.840 INFO kablam! 76 | let mut aln_pos; Aug 29 19:42:13.840 INFO kablam! | ----^^^^^^^ Aug 29 19:42:13.840 INFO kablam! | | Aug 29 19:42:13.840 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.840 INFO kablam! Aug 29 19:42:13.895 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.895 INFO kablam! --> src/main.rs:144:9 Aug 29 19:42:13.895 INFO kablam! | Aug 29 19:42:13.895 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Aug 29 19:42:13.895 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.895 INFO kablam! | | Aug 29 19:42:13.895 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.895 INFO kablam! Aug 29 19:42:13.896 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.896 INFO kablam! --> src/main.rs:151:9 Aug 29 19:42:13.896 INFO kablam! | Aug 29 19:42:13.896 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Aug 29 19:42:13.896 INFO kablam! | ----^^^^^^^^^ Aug 29 19:42:13.896 INFO kablam! | | Aug 29 19:42:13.896 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.896 INFO kablam! Aug 29 19:42:13.924 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.924 INFO kablam! --> src/main.rs:144:9 Aug 29 19:42:13.925 INFO kablam! | Aug 29 19:42:13.925 INFO kablam! 144 | let mut consensus_source_reads = String::new(); Aug 29 19:42:13.925 INFO kablam! | ----^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.925 INFO kablam! | | Aug 29 19:42:13.925 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.925 INFO kablam! Aug 29 19:42:13.925 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.925 INFO kablam! --> src/main.rs:151:9 Aug 29 19:42:13.925 INFO kablam! | Aug 29 19:42:13.925 INFO kablam! 151 | let mut top_cigar:&CigarStringView; Aug 29 19:42:13.925 INFO kablam! | ----^^^^^^^^^ Aug 29 19:42:13.925 INFO kablam! | | Aug 29 19:42:13.925 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.925 INFO kablam! Aug 29 19:42:13.930 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.930 INFO kablam! --> src/main.rs:338:9 Aug 29 19:42:13.930 INFO kablam! | Aug 29 19:42:13.930 INFO kablam! 338 | let mut need_trim:bool; Aug 29 19:42:13.930 INFO kablam! | ----^^^^^^^^^ Aug 29 19:42:13.930 INFO kablam! | | Aug 29 19:42:13.930 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.930 INFO kablam! Aug 29 19:42:13.930 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.930 INFO kablam! --> src/main.rs:355:9 Aug 29 19:42:13.930 INFO kablam! | Aug 29 19:42:13.931 INFO kablam! 355 | let mut chrom = 0; Aug 29 19:42:13.931 INFO kablam! | ----^^^^^ Aug 29 19:42:13.931 INFO kablam! | | Aug 29 19:42:13.931 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.931 INFO kablam! Aug 29 19:42:13.933 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Aug 29 19:42:13.933 INFO kablam! --> src/main.rs:68:1 Aug 29 19:42:13.933 INFO kablam! | Aug 29 19:42:13.933 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Aug 29 19:42:13.933 INFO kablam! 69 | | Aug 29 19:42:13.933 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Aug 29 19:42:13.933 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Aug 29 19:42:13.933 INFO kablam! ... | Aug 29 19:42:13.933 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Aug 29 19:42:13.934 INFO kablam! 98 | | } Aug 29 19:42:13.934 INFO kablam! | |_^ Aug 29 19:42:13.934 INFO kablam! | Aug 29 19:42:13.934 INFO kablam! = note: #[warn(non_snake_case)] on by default Aug 29 19:42:13.934 INFO kablam! Aug 29 19:42:13.935 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Aug 29 19:42:13.935 INFO kablam! --> src/main.rs:147:9 Aug 29 19:42:13.935 INFO kablam! | Aug 29 19:42:13.935 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Aug 29 19:42:13.935 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.935 INFO kablam! Aug 29 19:42:13.935 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Aug 29 19:42:13.935 INFO kablam! --> src/main.rs:148:9 Aug 29 19:42:13.935 INFO kablam! | Aug 29 19:42:13.935 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Aug 29 19:42:13.936 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.936 INFO kablam! Aug 29 19:42:13.936 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.936 INFO kablam! --> src/main.rs:267:9 Aug 29 19:42:13.936 INFO kablam! | Aug 29 19:42:13.936 INFO kablam! 267 | o_buff.write(&member_record.2); Aug 29 19:42:13.936 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.936 INFO kablam! | Aug 29 19:42:13.937 INFO kablam! = note: #[warn(unused_must_use)] on by default Aug 29 19:42:13.937 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.937 INFO kablam! Aug 29 19:42:13.937 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.937 INFO kablam! --> src/main.rs:269:9 Aug 29 19:42:13.937 INFO kablam! | Aug 29 19:42:13.937 INFO kablam! 269 | o_buff.write(&member_record.0); Aug 29 19:42:13.937 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.937 INFO kablam! | Aug 29 19:42:13.938 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.938 INFO kablam! Aug 29 19:42:13.938 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.938 INFO kablam! --> src/main.rs:272:9 Aug 29 19:42:13.938 INFO kablam! | Aug 29 19:42:13.938 INFO kablam! 272 | o_buff.write(&real_qual_temp); Aug 29 19:42:13.938 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.938 INFO kablam! | Aug 29 19:42:13.939 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.939 INFO kablam! Aug 29 19:42:13.939 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.939 INFO kablam! --> src/main.rs:274:5 Aug 29 19:42:13.939 INFO kablam! | Aug 29 19:42:13.939 INFO kablam! 274 | o_buff.write(b"\n"); Aug 29 19:42:13.939 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.939 INFO kablam! | Aug 29 19:42:13.940 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.940 INFO kablam! Aug 29 19:42:13.940 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.940 INFO kablam! --> src/main.rs:277:5 Aug 29 19:42:13.940 INFO kablam! | Aug 29 19:42:13.940 INFO kablam! 277 | o_buff.write(b"\n"); Aug 29 19:42:13.940 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.940 INFO kablam! | Aug 29 19:42:13.941 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.941 INFO kablam! Aug 29 19:42:13.941 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.941 INFO kablam! --> src/main.rs:280:5 Aug 29 19:42:13.941 INFO kablam! | Aug 29 19:42:13.941 INFO kablam! 280 | o_buff.write(b"\n"); Aug 29 19:42:13.941 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.941 INFO kablam! | Aug 29 19:42:13.941 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.942 INFO kablam! Aug 29 19:42:13.942 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Aug 29 19:42:13.942 INFO kablam! --> src/main.rs:286:10 Aug 29 19:42:13.942 INFO kablam! | Aug 29 19:42:13.942 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Aug 29 19:42:13.942 INFO kablam! | ^^^^^^^^^^^^ Aug 29 19:42:13.942 INFO kablam! Aug 29 19:42:13.943 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Aug 29 19:42:13.943 INFO kablam! --> src/main.rs:357:9 Aug 29 19:42:13.943 INFO kablam! | Aug 29 19:42:13.943 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Aug 29 19:42:13.943 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.943 INFO kablam! Aug 29 19:42:13.944 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Aug 29 19:42:13.944 INFO kablam! --> src/main.rs:387:17 Aug 29 19:42:13.944 INFO kablam! | Aug 29 19:42:13.944 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Aug 29 19:42:13.944 INFO kablam! | ^^^^^^^^^^^^ Aug 29 19:42:13.944 INFO kablam! Aug 29 19:42:13.984 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.984 INFO kablam! --> src/main.rs:338:9 Aug 29 19:42:13.984 INFO kablam! | Aug 29 19:42:13.984 INFO kablam! 338 | let mut need_trim:bool; Aug 29 19:42:13.984 INFO kablam! | ----^^^^^^^^^ Aug 29 19:42:13.984 INFO kablam! | | Aug 29 19:42:13.984 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.984 INFO kablam! Aug 29 19:42:13.984 INFO kablam! warning: variable does not need to be mutable Aug 29 19:42:13.984 INFO kablam! --> src/main.rs:355:9 Aug 29 19:42:13.984 INFO kablam! | Aug 29 19:42:13.984 INFO kablam! 355 | let mut chrom = 0; Aug 29 19:42:13.984 INFO kablam! | ----^^^^^ Aug 29 19:42:13.984 INFO kablam! | | Aug 29 19:42:13.984 INFO kablam! | help: remove this `mut` Aug 29 19:42:13.984 INFO kablam! Aug 29 19:42:13.993 INFO kablam! warning: function `bamLineParse` should have a snake case name such as `bam_line_parse` Aug 29 19:42:13.993 INFO kablam! --> src/main.rs:68:1 Aug 29 19:42:13.993 INFO kablam! | Aug 29 19:42:13.993 INFO kablam! 68 | / fn bamLineParse(record:&Record) -> (String, String, String, i32, i32){ Aug 29 19:42:13.993 INFO kablam! 69 | | Aug 29 19:42:13.993 INFO kablam! 70 | | let qname_str = String::from_utf8_lossy(record.qname()).to_string(); Aug 29 19:42:13.993 INFO kablam! 71 | | let temp_v:Vec<&str> = qname_str.split('#').collect(); Aug 29 19:42:13.993 INFO kablam! ... | Aug 29 19:42:13.993 INFO kablam! 97 | | (index, pair.to_string(), strand.to_string(), insert_size.abs(), aln_pos) Aug 29 19:42:13.993 INFO kablam! 98 | | } Aug 29 19:42:13.993 INFO kablam! | |_^ Aug 29 19:42:13.993 INFO kablam! | Aug 29 19:42:13.993 INFO kablam! = note: #[warn(non_snake_case)] on by default Aug 29 19:42:13.993 INFO kablam! Aug 29 19:42:13.995 INFO kablam! warning: variable `baseEach_num_record` should have a snake case name such as `base_each_num_record` Aug 29 19:42:13.995 INFO kablam! --> src/main.rs:147:9 Aug 29 19:42:13.995 INFO kablam! | Aug 29 19:42:13.995 INFO kablam! 147 | let mut baseEach_num_record = String::new(); Aug 29 19:42:13.995 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.995 INFO kablam! Aug 29 19:42:13.995 INFO kablam! warning: variable `baseEach_percent_record` should have a snake case name such as `base_each_percent_record` Aug 29 19:42:13.995 INFO kablam! --> src/main.rs:148:9 Aug 29 19:42:13.995 INFO kablam! | Aug 29 19:42:13.995 INFO kablam! 148 | let mut baseEach_percent_record = String::new(); Aug 29 19:42:13.995 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.995 INFO kablam! Aug 29 19:42:13.996 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.996 INFO kablam! --> src/main.rs:267:9 Aug 29 19:42:13.996 INFO kablam! | Aug 29 19:42:13.997 INFO kablam! 267 | o_buff.write(&member_record.2); Aug 29 19:42:13.997 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.997 INFO kablam! | Aug 29 19:42:13.997 INFO kablam! = note: #[warn(unused_must_use)] on by default Aug 29 19:42:13.997 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.997 INFO kablam! Aug 29 19:42:13.997 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.997 INFO kablam! --> src/main.rs:269:9 Aug 29 19:42:13.997 INFO kablam! | Aug 29 19:42:13.997 INFO kablam! 269 | o_buff.write(&member_record.0); Aug 29 19:42:13.997 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.997 INFO kablam! | Aug 29 19:42:13.997 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.997 INFO kablam! Aug 29 19:42:13.997 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.997 INFO kablam! --> src/main.rs:272:9 Aug 29 19:42:13.997 INFO kablam! | Aug 29 19:42:13.997 INFO kablam! 272 | o_buff.write(&real_qual_temp); Aug 29 19:42:13.997 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.998 INFO kablam! | Aug 29 19:42:13.999 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.999 INFO kablam! Aug 29 19:42:13.999 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:13.999 INFO kablam! --> src/main.rs:274:5 Aug 29 19:42:13.999 INFO kablam! | Aug 29 19:42:13.999 INFO kablam! 274 | o_buff.write(b"\n"); Aug 29 19:42:13.999 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:13.999 INFO kablam! | Aug 29 19:42:13.999 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:13.999 INFO kablam! Aug 29 19:42:14.000 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:14.000 INFO kablam! --> src/main.rs:277:5 Aug 29 19:42:14.000 INFO kablam! | Aug 29 19:42:14.000 INFO kablam! 277 | o_buff.write(b"\n"); Aug 29 19:42:14.000 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:14.000 INFO kablam! | Aug 29 19:42:14.000 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:14.000 INFO kablam! Aug 29 19:42:14.000 INFO kablam! warning: unused `std::result::Result` which must be used Aug 29 19:42:14.000 INFO kablam! --> src/main.rs:280:5 Aug 29 19:42:14.000 INFO kablam! | Aug 29 19:42:14.000 INFO kablam! 280 | o_buff.write(b"\n"); Aug 29 19:42:14.000 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:14.000 INFO kablam! | Aug 29 19:42:14.001 INFO kablam! = note: this `Result` may be an `Err` variant, which should be handled Aug 29 19:42:14.001 INFO kablam! Aug 29 19:42:14.002 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Aug 29 19:42:14.002 INFO kablam! --> src/main.rs:286:10 Aug 29 19:42:14.002 INFO kablam! | Aug 29 19:42:14.002 INFO kablam! 286 | for (key_dupGroup, pair_dup) in pd.iter() { Aug 29 19:42:14.002 INFO kablam! | ^^^^^^^^^^^^ Aug 29 19:42:14.002 INFO kablam! Aug 29 19:42:14.003 INFO kablam! warning: variable `position_dupGroup` should have a snake case name such as `position_dup_group` Aug 29 19:42:14.003 INFO kablam! --> src/main.rs:357:9 Aug 29 19:42:14.003 INFO kablam! | Aug 29 19:42:14.003 INFO kablam! 357 | let mut position_dupGroup: HashMap, Vec, Vec, CigarStringView, bool)>>> = HashMap::new(); Aug 29 19:42:14.003 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^ Aug 29 19:42:14.003 INFO kablam! Aug 29 19:42:14.003 INFO kablam! warning: variable `key_dupGroup` should have a snake case name such as `key_dup_group` Aug 29 19:42:14.003 INFO kablam! --> src/main.rs:387:17 Aug 29 19:42:14.003 INFO kablam! | Aug 29 19:42:14.003 INFO kablam! 387 | let key_dupGroup = format!("{}_{}_{}_{}{}", index, chrom, aln_pos, strand, insert_size); Aug 29 19:42:14.003 INFO kablam! | ^^^^^^^^^^^^ Aug 29 19:42:14.003 INFO kablam! Aug 29 19:42:14.082 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 44.30s Aug 29 19:42:14.095 INFO kablam! su: No module specific data is present Aug 29 19:42:14.565 INFO running `"docker" "rm" "-f" "07886503f53a6c9ae8b253ca56b7799227abdcf571e6b4060cdb23103e290339"` Aug 29 19:42:14.725 INFO blam! 07886503f53a6c9ae8b253ca56b7799227abdcf571e6b4060cdb23103e290339