Aug 18 02:56:51.194 INFO checking bio-0.15.0 against try#a5d98b025f62ace80fe9d2a15781f900fc42515e for pr-53426 Aug 18 02:56:51.194 INFO running: cargo +a5d98b025f62ace80fe9d2a15781f900fc42515e-alt check --frozen --all --all-targets Aug 18 02:56:51.194 INFO creating container for: cargo +a5d98b025f62ace80fe9d2a15781f900fc42515e-alt check --frozen --all --all-targets Aug 18 02:56:51.194 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-7/pr-53426/try#a5d98b025f62ace80fe9d2a15781f900fc42515e:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53426/worker-7/try#a5d98b025f62ace80fe9d2a15781f900fc42515e:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +a5d98b025f62ace80fe9d2a15781f900fc42515e-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "crater"` Aug 18 02:56:51.433 INFO blam! 2419f9c740efab232e640217150a1937608fd165685f138388261b30cc4e997d Aug 18 02:56:51.436 INFO running `"docker" "start" "-a" "2419f9c740efab232e640217150a1937608fd165685f138388261b30cc4e997d"` Aug 18 02:56:52.590 INFO kablam! Compiling ndarray v0.9.1 Aug 18 02:56:52.610 INFO kablam! Compiling newtype_derive v0.1.6 Aug 18 02:56:52.613 INFO kablam! Checking csv-core v0.1.4 Aug 18 02:56:52.628 INFO kablam! Checking multimap v0.4.0 Aug 18 02:56:52.631 INFO kablam! Checking vec_map v0.8.1 Aug 18 02:56:55.830 INFO kablam! Checking csv v1.0.0 Aug 18 02:57:14.117 INFO kablam! Checking bio v0.15.0 (file:///source) Aug 18 02:57:18.457 INFO kablam! warning: doc comment not used by rustdoc Aug 18 02:57:18.457 INFO kablam! --> src/stats/pairhmm.rs:44:13 Aug 18 02:57:18.457 INFO kablam! | Aug 18 02:57:18.457 INFO kablam! 44 | /// For global alignment, this has to return 0.0. Aug 18 02:57:18.457 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:18.458 INFO kablam! | Aug 18 02:57:18.459 INFO kablam! = note: #[warn(unused_doc_comments)] on by default Aug 18 02:57:18.459 INFO kablam! Aug 18 02:57:18.602 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:18.602 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:18.602 INFO kablam! | Aug 18 02:57:18.602 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:18.602 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:18.603 INFO kablam! | Aug 18 02:57:18.603 INFO kablam! = note: #[warn(deprecated)] on by default Aug 18 02:57:18.603 INFO kablam! Aug 18 02:57:18.603 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:18.603 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:18.603 INFO kablam! | Aug 18 02:57:18.604 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:18.604 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:18.604 INFO kablam! Aug 18 02:57:20.253 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:20.253 INFO kablam! --> src/data_structures/interval_tree.rs:423:21 Aug 18 02:57:20.253 INFO kablam! | Aug 18 02:57:20.253 INFO kablam! 423 | tree.insert((start..end), name); Aug 18 02:57:20.253 INFO kablam! | ^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.253 INFO kablam! | Aug 18 02:57:20.253 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 18 02:57:20.253 INFO kablam! Aug 18 02:57:20.254 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:20.254 INFO kablam! --> src/data_structures/interval_tree.rs:465:21 Aug 18 02:57:20.254 INFO kablam! | Aug 18 02:57:20.254 INFO kablam! 465 | tree.insert((50..51), "50:51".to_string()); Aug 18 02:57:20.254 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.254 INFO kablam! Aug 18 02:57:20.254 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.254 INFO kablam! --> src/data_structures/interval_tree.rs:466:33 Aug 18 02:57:20.254 INFO kablam! | Aug 18 02:57:20.254 INFO kablam! 466 | assert_not_found(&tree, (49..50)); Aug 18 02:57:20.254 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.254 INFO kablam! Aug 18 02:57:20.254 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.254 INFO kablam! --> src/data_structures/interval_tree.rs:467:37 Aug 18 02:57:20.254 INFO kablam! | Aug 18 02:57:20.254 INFO kablam! 467 | assert_intersections(&tree, (49..55), vec![(50..51)]); Aug 18 02:57:20.254 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.254 INFO kablam! Aug 18 02:57:20.254 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.254 INFO kablam! --> src/data_structures/interval_tree.rs:468:33 Aug 18 02:57:20.254 INFO kablam! | Aug 18 02:57:20.254 INFO kablam! 468 | assert_not_found(&tree, (51..55)); Aug 18 02:57:20.254 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.254 INFO kablam! Aug 18 02:57:20.254 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.255 INFO kablam! --> src/data_structures/interval_tree.rs:469:33 Aug 18 02:57:20.255 INFO kablam! | Aug 18 02:57:20.255 INFO kablam! 469 | assert_not_found(&tree, (52..55)); Aug 18 02:57:20.255 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.255 INFO kablam! Aug 18 02:57:20.255 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.255 INFO kablam! --> src/data_structures/interval_tree.rs:470:33 Aug 18 02:57:20.255 INFO kablam! | Aug 18 02:57:20.255 INFO kablam! 470 | assert_not_found(&tree, (40..45)); Aug 18 02:57:20.255 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.255 INFO kablam! Aug 18 02:57:20.255 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.255 INFO kablam! --> src/data_structures/interval_tree.rs:472:37 Aug 18 02:57:20.255 INFO kablam! | Aug 18 02:57:20.255 INFO kablam! 472 | assert_intersections(&tree, (80..83), vec![(80..81)]); Aug 18 02:57:20.255 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.255 INFO kablam! Aug 18 02:57:20.256 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.256 INFO kablam! --> src/data_structures/interval_tree.rs:473:37 Aug 18 02:57:20.256 INFO kablam! | Aug 18 02:57:20.256 INFO kablam! 473 | assert_intersections(&tree, (1..100), vec![(50..51), (80..81)]); Aug 18 02:57:20.256 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.256 INFO kablam! Aug 18 02:57:20.256 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.256 INFO kablam! --> src/data_structures/interval_tree.rs:474:33 Aug 18 02:57:20.256 INFO kablam! | Aug 18 02:57:20.256 INFO kablam! 474 | assert_not_found(&tree, (82..83)); Aug 18 02:57:20.256 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.256 INFO kablam! Aug 18 02:57:20.267 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.267 INFO kablam! --> src/data_structures/interval_tree.rs:476:37 Aug 18 02:57:20.267 INFO kablam! | Aug 18 02:57:20.267 INFO kablam! 476 | assert_intersections(&tree, (25..33), vec![(30..35)]); Aug 18 02:57:20.267 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.267 INFO kablam! Aug 18 02:57:20.267 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.267 INFO kablam! --> src/data_structures/interval_tree.rs:477:37 Aug 18 02:57:20.267 INFO kablam! | Aug 18 02:57:20.267 INFO kablam! 477 | assert_intersections(&tree, (1..100), vec![(30..35), (50..51), (80..81)]); Aug 18 02:57:20.267 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.267 INFO kablam! Aug 18 02:57:20.267 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.267 INFO kablam! --> src/data_structures/interval_tree.rs:478:33 Aug 18 02:57:20.267 INFO kablam! | Aug 18 02:57:20.267 INFO kablam! 478 | assert_not_found(&tree, (42..43)); Aug 18 02:57:20.267 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.267 INFO kablam! Aug 18 02:57:20.267 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.267 INFO kablam! --> src/data_structures/interval_tree.rs:479:33 Aug 18 02:57:20.267 INFO kablam! | Aug 18 02:57:20.267 INFO kablam! 479 | assert_not_found(&tree, (35..36)); Aug 18 02:57:20.267 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.267 INFO kablam! Aug 18 02:57:20.269 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.269 INFO kablam! --> src/data_structures/interval_tree.rs:480:33 Aug 18 02:57:20.269 INFO kablam! | Aug 18 02:57:20.269 INFO kablam! 480 | assert_not_found(&tree, (22..29)); Aug 18 02:57:20.269 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.269 INFO kablam! Aug 18 02:57:20.269 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.269 INFO kablam! --> src/data_structures/interval_tree.rs:482:37 Aug 18 02:57:20.269 INFO kablam! | Aug 18 02:57:20.269 INFO kablam! 482 | assert_intersections(&tree, (75..79), vec![(70..77)]); Aug 18 02:57:20.269 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.269 INFO kablam! Aug 18 02:57:20.269 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.269 INFO kablam! --> src/data_structures/interval_tree.rs:484:30 Aug 18 02:57:20.269 INFO kablam! | Aug 18 02:57:20.269 INFO kablam! 484 | (1..100), Aug 18 02:57:20.269 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.269 INFO kablam! Aug 18 02:57:20.269 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.269 INFO kablam! --> src/data_structures/interval_tree.rs:486:33 Aug 18 02:57:20.269 INFO kablam! | Aug 18 02:57:20.269 INFO kablam! 486 | assert_not_found(&tree, (62..68)); Aug 18 02:57:20.269 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.269 INFO kablam! Aug 18 02:57:20.269 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.269 INFO kablam! --> src/data_structures/interval_tree.rs:487:37 Aug 18 02:57:20.269 INFO kablam! | Aug 18 02:57:20.269 INFO kablam! 487 | assert_intersections(&tree, (75..77), vec![(70..77)]); Aug 18 02:57:20.269 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.270 INFO kablam! Aug 18 02:57:20.270 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.270 INFO kablam! --> src/data_structures/interval_tree.rs:488:33 Aug 18 02:57:20.270 INFO kablam! | Aug 18 02:57:20.270 INFO kablam! 488 | assert_not_found(&tree, (78..79)); Aug 18 02:57:20.270 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.270 INFO kablam! Aug 18 02:57:20.270 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.270 INFO kablam! --> src/data_structures/interval_tree.rs:489:37 Aug 18 02:57:20.270 INFO kablam! | Aug 18 02:57:20.270 INFO kablam! 489 | assert_intersections(&tree, (49..51), vec![(50..51)]); Aug 18 02:57:20.270 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.270 INFO kablam! Aug 18 02:57:20.270 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.270 INFO kablam! --> src/data_structures/interval_tree.rs:490:37 Aug 18 02:57:20.270 INFO kablam! | Aug 18 02:57:20.270 INFO kablam! 490 | assert_intersections(&tree, (49..55), vec![(50..51)]); Aug 18 02:57:20.270 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.270 INFO kablam! Aug 18 02:57:20.270 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.270 INFO kablam! --> src/data_structures/interval_tree.rs:491:33 Aug 18 02:57:20.270 INFO kablam! | Aug 18 02:57:20.270 INFO kablam! 491 | assert_not_found(&tree, (51..55)); Aug 18 02:57:20.270 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.270 INFO kablam! Aug 18 02:57:20.270 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.270 INFO kablam! --> src/data_structures/interval_tree.rs:492:33 Aug 18 02:57:20.270 INFO kablam! | Aug 18 02:57:20.270 INFO kablam! 492 | assert_not_found(&tree, (52..55)); Aug 18 02:57:20.270 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.271 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.271 INFO kablam! --> src/data_structures/interval_tree.rs:493:33 Aug 18 02:57:20.271 INFO kablam! | Aug 18 02:57:20.271 INFO kablam! 493 | assert_not_found(&tree, (40..45)); Aug 18 02:57:20.271 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.271 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.271 INFO kablam! --> src/data_structures/interval_tree.rs:503:33 Aug 18 02:57:20.271 INFO kablam! | Aug 18 02:57:20.271 INFO kablam! 503 | assert_not_found(&tree, (112..113)); Aug 18 02:57:20.271 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.271 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.271 INFO kablam! --> src/data_structures/interval_tree.rs:504:33 Aug 18 02:57:20.271 INFO kablam! | Aug 18 02:57:20.271 INFO kablam! 504 | assert_not_found(&tree, (108..109)); Aug 18 02:57:20.271 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.271 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.271 INFO kablam! --> src/data_structures/interval_tree.rs:505:37 Aug 18 02:57:20.271 INFO kablam! | Aug 18 02:57:20.271 INFO kablam! 505 | assert_intersections(&tree, (106..108), vec![(107..108)]); Aug 18 02:57:20.271 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.271 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.271 INFO kablam! --> src/data_structures/interval_tree.rs:507:30 Aug 18 02:57:20.271 INFO kablam! | Aug 18 02:57:20.271 INFO kablam! 507 | (1..100), Aug 18 02:57:20.271 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.271 INFO kablam! Aug 18 02:57:20.272 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.272 INFO kablam! --> src/data_structures/interval_tree.rs:510:30 Aug 18 02:57:20.272 INFO kablam! | Aug 18 02:57:20.272 INFO kablam! 510 | (1..101), Aug 18 02:57:20.272 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.272 INFO kablam! Aug 18 02:57:20.272 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.272 INFO kablam! --> src/data_structures/interval_tree.rs:513:30 Aug 18 02:57:20.272 INFO kablam! | Aug 18 02:57:20.272 INFO kablam! 513 | (1..102), Aug 18 02:57:20.272 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.272 INFO kablam! Aug 18 02:57:20.272 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.272 INFO kablam! --> src/data_structures/interval_tree.rs:516:30 Aug 18 02:57:20.272 INFO kablam! | Aug 18 02:57:20.272 INFO kablam! 516 | (100..200), Aug 18 02:57:20.272 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.272 INFO kablam! Aug 18 02:57:20.272 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.272 INFO kablam! --> src/data_structures/interval_tree.rs:543:41 Aug 18 02:57:20.272 INFO kablam! | Aug 18 02:57:20.272 INFO kablam! 543 | assert_intersections(&tree, (lower_bound..upper_bound), expected_intersections); Aug 18 02:57:20.272 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.272 INFO kablam! Aug 18 02:57:20.273 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:20.273 INFO kablam! --> src/data_structures/interval_tree.rs:550:21 Aug 18 02:57:20.273 INFO kablam! | Aug 18 02:57:20.273 INFO kablam! 550 | tree.insert((10..10), "10:10".to_string()); Aug 18 02:57:20.273 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.273 INFO kablam! Aug 18 02:57:20.273 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.273 INFO kablam! --> src/data_structures/interval_tree.rs:552:33 Aug 18 02:57:20.273 INFO kablam! | Aug 18 02:57:20.273 INFO kablam! 552 | assert_not_found(&tree, (5..15)); Aug 18 02:57:20.273 INFO kablam! | ^^^^^^^ help: remove these parentheses Aug 18 02:57:20.273 INFO kablam! Aug 18 02:57:20.273 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.273 INFO kablam! --> src/data_structures/interval_tree.rs:553:33 Aug 18 02:57:20.273 INFO kablam! | Aug 18 02:57:20.273 INFO kablam! 553 | assert_not_found(&tree, (10..10)); Aug 18 02:57:20.273 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.273 INFO kablam! Aug 18 02:57:20.273 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:20.273 INFO kablam! --> src/data_structures/interval_tree.rs:556:33 Aug 18 02:57:20.273 INFO kablam! | Aug 18 02:57:20.273 INFO kablam! 556 | assert_not_found(&tree, (55..55)); Aug 18 02:57:20.273 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:20.274 INFO kablam! Aug 18 02:57:20.318 INFO kablam! warning: doc comment not used by rustdoc Aug 18 02:57:20.318 INFO kablam! --> src/stats/pairhmm.rs:44:13 Aug 18 02:57:20.318 INFO kablam! | Aug 18 02:57:20.318 INFO kablam! 44 | /// For global alignment, this has to return 0.0. Aug 18 02:57:20.318 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:20.318 INFO kablam! | Aug 18 02:57:20.318 INFO kablam! = note: #[warn(unused_doc_comments)] on by default Aug 18 02:57:20.318 INFO kablam! Aug 18 02:57:20.968 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:20.969 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:20.969 INFO kablam! | Aug 18 02:57:20.969 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:20.969 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:20.969 INFO kablam! | Aug 18 02:57:20.969 INFO kablam! = note: #[warn(deprecated)] on by default Aug 18 02:57:20.969 INFO kablam! Aug 18 02:57:20.969 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:20.969 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:20.969 INFO kablam! | Aug 18 02:57:20.969 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:20.969 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:20.969 INFO kablam! Aug 18 02:57:27.433 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:27.433 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:27.433 INFO kablam! | Aug 18 02:57:27.433 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:27.433 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.433 INFO kablam! | Aug 18 02:57:27.433 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 18 02:57:27.433 INFO kablam! Aug 18 02:57:27.434 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:27.434 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:27.434 INFO kablam! | Aug 18 02:57:27.434 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:27.434 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.434 INFO kablam! Aug 18 02:57:29.804 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:29.804 INFO kablam! --> src/data_structures/qgram_index.rs:72:13 Aug 18 02:57:29.804 INFO kablam! | Aug 18 02:57:29.804 INFO kablam! 72 | for mut a in address.iter_mut().skip(1) { Aug 18 02:57:29.804 INFO kablam! | ----^ Aug 18 02:57:29.804 INFO kablam! | | Aug 18 02:57:29.804 INFO kablam! | help: remove this `mut` Aug 18 02:57:29.804 INFO kablam! | Aug 18 02:57:29.804 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 18 02:57:29.804 INFO kablam! Aug 18 02:57:30.293 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:30.293 INFO kablam! --> src/data_structures/interval_tree.rs:293:21 Aug 18 02:57:30.294 INFO kablam! | Aug 18 02:57:30.294 INFO kablam! 293 | let mut right = self.right Aug 18 02:57:30.294 INFO kablam! | ----^^^^^ Aug 18 02:57:30.294 INFO kablam! | | Aug 18 02:57:30.294 INFO kablam! | help: remove this `mut` Aug 18 02:57:30.294 INFO kablam! Aug 18 02:57:30.294 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:30.294 INFO kablam! --> src/data_structures/interval_tree.rs:305:21 Aug 18 02:57:30.294 INFO kablam! | Aug 18 02:57:30.294 INFO kablam! 305 | let mut left = self.left Aug 18 02:57:30.294 INFO kablam! | ----^^^^ Aug 18 02:57:30.294 INFO kablam! | | Aug 18 02:57:30.294 INFO kablam! | help: remove this `mut` Aug 18 02:57:30.294 INFO kablam! Aug 18 02:57:30.431 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:30.431 INFO kablam! --> src/alignment/pairwise.rs:258:25 Aug 18 02:57:30.431 INFO kablam! | Aug 18 02:57:30.431 INFO kablam! 258 | let mut i = &mut self.I[k]; Aug 18 02:57:30.431 INFO kablam! | ----^ Aug 18 02:57:30.431 INFO kablam! | | Aug 18 02:57:30.431 INFO kablam! | help: remove this `mut` Aug 18 02:57:30.432 INFO kablam! Aug 18 02:57:31.546 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:31.546 INFO kablam! --> src/alphabets/dna.rs:45:17 Aug 18 02:57:31.546 INFO kablam! | Aug 18 02:57:31.546 INFO kablam! 45 | for (v, mut a) in comp.iter_mut().enumerate() { Aug 18 02:57:31.546 INFO kablam! | ----^ Aug 18 02:57:31.546 INFO kablam! | | Aug 18 02:57:31.546 INFO kablam! | help: remove this `mut` Aug 18 02:57:31.546 INFO kablam! Aug 18 02:57:31.554 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:31.554 INFO kablam! --> src/alphabets/rna.rs:45:17 Aug 18 02:57:31.554 INFO kablam! | Aug 18 02:57:31.554 INFO kablam! 45 | for (v, mut a) in comp.iter_mut().enumerate() { Aug 18 02:57:31.554 INFO kablam! | ----^ Aug 18 02:57:31.554 INFO kablam! | | Aug 18 02:57:31.554 INFO kablam! | help: remove this `mut` Aug 18 02:57:31.554 INFO kablam! Aug 18 02:57:39.266 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:39.266 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:39.267 INFO kablam! | Aug 18 02:57:39.267 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:39.267 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:39.286 INFO kablam! | Aug 18 02:57:39.287 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 18 02:57:39.287 INFO kablam! Aug 18 02:57:39.287 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:39.287 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:39.287 INFO kablam! | Aug 18 02:57:39.287 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:39.287 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:39.287 INFO kablam! Aug 18 02:57:47.470 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:47.470 INFO kablam! --> benches/interval_tree.rs:17:64 Aug 18 02:57:47.470 INFO kablam! | Aug 18 02:57:47.470 INFO kablam! 17 | b.iter(|| test_insert_query(10, &(100_000..200_000), 1000, (105_000..106_000))); Aug 18 02:57:47.470 INFO kablam! | ^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:47.470 INFO kablam! | Aug 18 02:57:47.470 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 18 02:57:47.470 INFO kablam! Aug 18 02:57:47.495 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:47.495 INFO kablam! --> benches/interval_tree.rs:24:62 Aug 18 02:57:47.495 INFO kablam! | Aug 18 02:57:47.495 INFO kablam! 24 | b.iter(|| test_insert_query(10, &(100_000..200_000), 10, (99_995..199_995))); Aug 18 02:57:47.495 INFO kablam! | ^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:47.495 INFO kablam! Aug 18 02:57:47.495 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:47.495 INFO kablam! --> benches/interval_tree.rs:35:21 Aug 18 02:57:47.495 INFO kablam! | Aug 18 02:57:47.495 INFO kablam! 35 | tree.insert((i..i + insert_size), (i..i + insert_size)); Aug 18 02:57:47.495 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:47.495 INFO kablam! Aug 18 02:57:47.495 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:47.496 INFO kablam! --> benches/interval_tree.rs:35:43 Aug 18 02:57:47.496 INFO kablam! | Aug 18 02:57:47.496 INFO kablam! 35 | tree.insert((i..i + insert_size), (i..i + insert_size)); Aug 18 02:57:47.496 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:47.496 INFO kablam! Aug 18 02:57:47.496 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:47.496 INFO kablam! --> benches/interval_tree.rs:46:37 Aug 18 02:57:47.496 INFO kablam! | Aug 18 02:57:47.496 INFO kablam! 46 | assert_intersections(&tree, (lower_bound..upper_bound), &expected_intersections); Aug 18 02:57:47.496 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:47.496 INFO kablam! Aug 18 02:57:48.194 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:48.194 INFO kablam! --> benches/pattern_matching.rs:231:16 Aug 18 02:57:48.194 INFO kablam! | Aug 18 02:57:48.194 INFO kablam! 231 | shiftand.find_all(TEXT.iter()).collect::>(); Aug 18 02:57:48.194 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:48.206 INFO kablam! | Aug 18 02:57:48.210 INFO kablam! = note: #[warn(unused_must_use)] on by default Aug 18 02:57:48.222 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:48.222 INFO kablam! Aug 18 02:57:48.223 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:48.223 INFO kablam! --> benches/pattern_matching.rs:239:16 Aug 18 02:57:48.223 INFO kablam! | Aug 18 02:57:48.223 INFO kablam! 239 | bndm.find_all(TEXT).collect::>(); Aug 18 02:57:48.223 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:48.223 INFO kablam! | Aug 18 02:57:48.224 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:48.224 INFO kablam! Aug 18 02:57:48.225 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:48.225 INFO kablam! --> benches/pattern_matching.rs:247:16 Aug 18 02:57:48.225 INFO kablam! | Aug 18 02:57:48.225 INFO kablam! 247 | bom.find_all(TEXT).collect::>(); Aug 18 02:57:48.225 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:48.225 INFO kablam! | Aug 18 02:57:48.226 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:48.226 INFO kablam! Aug 18 02:57:48.227 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:48.227 INFO kablam! --> benches/pattern_matching.rs:255:16 Aug 18 02:57:48.227 INFO kablam! | Aug 18 02:57:48.227 INFO kablam! 255 | horspool.find_all(TEXT).collect::>(); Aug 18 02:57:48.227 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:48.227 INFO kablam! | Aug 18 02:57:48.227 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:48.228 INFO kablam! Aug 18 02:57:48.228 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:48.228 INFO kablam! --> benches/pattern_matching.rs:263:16 Aug 18 02:57:48.229 INFO kablam! | Aug 18 02:57:48.229 INFO kablam! 263 | kmp.find_all(TEXT.iter()).collect::>(); Aug 18 02:57:48.229 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:48.229 INFO kablam! | Aug 18 02:57:48.229 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:48.230 INFO kablam! Aug 18 02:57:49.798 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:49.798 INFO kablam! --> src/data_structures/qgram_index.rs:72:13 Aug 18 02:57:49.798 INFO kablam! | Aug 18 02:57:49.798 INFO kablam! 72 | for mut a in address.iter_mut().skip(1) { Aug 18 02:57:49.798 INFO kablam! | ----^ Aug 18 02:57:49.798 INFO kablam! | | Aug 18 02:57:49.798 INFO kablam! | help: remove this `mut` Aug 18 02:57:49.799 INFO kablam! | Aug 18 02:57:49.799 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 18 02:57:49.799 INFO kablam! Aug 18 02:57:50.123 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:50.123 INFO kablam! --> src/data_structures/interval_tree.rs:293:21 Aug 18 02:57:50.123 INFO kablam! | Aug 18 02:57:50.123 INFO kablam! 293 | let mut right = self.right Aug 18 02:57:50.123 INFO kablam! | ----^^^^^ Aug 18 02:57:50.123 INFO kablam! | | Aug 18 02:57:50.123 INFO kablam! | help: remove this `mut` Aug 18 02:57:50.124 INFO kablam! Aug 18 02:57:50.124 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:50.124 INFO kablam! --> src/data_structures/interval_tree.rs:305:21 Aug 18 02:57:50.124 INFO kablam! | Aug 18 02:57:50.124 INFO kablam! 305 | let mut left = self.left Aug 18 02:57:50.124 INFO kablam! | ----^^^^ Aug 18 02:57:50.124 INFO kablam! | | Aug 18 02:57:50.124 INFO kablam! | help: remove this `mut` Aug 18 02:57:50.124 INFO kablam! Aug 18 02:57:50.342 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:50.342 INFO kablam! --> src/alignment/pairwise.rs:258:25 Aug 18 02:57:50.342 INFO kablam! | Aug 18 02:57:50.342 INFO kablam! 258 | let mut i = &mut self.I[k]; Aug 18 02:57:50.342 INFO kablam! | ----^ Aug 18 02:57:50.342 INFO kablam! | | Aug 18 02:57:50.342 INFO kablam! | help: remove this `mut` Aug 18 02:57:50.342 INFO kablam! Aug 18 02:57:52.196 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:52.196 INFO kablam! --> src/alphabets/dna.rs:45:17 Aug 18 02:57:52.196 INFO kablam! | Aug 18 02:57:52.196 INFO kablam! 45 | for (v, mut a) in comp.iter_mut().enumerate() { Aug 18 02:57:52.196 INFO kablam! | ----^ Aug 18 02:57:52.196 INFO kablam! | | Aug 18 02:57:52.196 INFO kablam! | help: remove this `mut` Aug 18 02:57:52.196 INFO kablam! Aug 18 02:57:52.200 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:52.200 INFO kablam! --> src/alphabets/rna.rs:45:17 Aug 18 02:57:52.200 INFO kablam! | Aug 18 02:57:52.200 INFO kablam! 45 | for (v, mut a) in comp.iter_mut().enumerate() { Aug 18 02:57:52.200 INFO kablam! | ----^ Aug 18 02:57:52.200 INFO kablam! | | Aug 18 02:57:52.200 INFO kablam! | help: remove this `mut` Aug 18 02:57:52.200 INFO kablam! Aug 18 02:57:52.302 INFO kablam! warning: function is never used: `prob_emit_xy` Aug 18 02:57:52.302 INFO kablam! --> src/stats/pairhmm.rs:227:5 Aug 18 02:57:52.302 INFO kablam! | Aug 18 02:57:52.302 INFO kablam! 227 | fn prob_emit_xy(x: &[u8], y: &[u8], i: usize, j: usize) -> LogProb { Aug 18 02:57:52.302 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:52.302 INFO kablam! | Aug 18 02:57:52.302 INFO kablam! = note: #[warn(dead_code)] on by default Aug 18 02:57:52.302 INFO kablam! Aug 18 02:57:52.731 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 1m 00s Aug 18 02:57:52.762 INFO kablam! su: No module specific data is present Aug 18 02:57:53.278 INFO running `"docker" "rm" "-f" "2419f9c740efab232e640217150a1937608fd165685f138388261b30cc4e997d"` Aug 18 02:57:53.432 INFO blam! 2419f9c740efab232e640217150a1937608fd165685f138388261b30cc4e997d