Aug 18 02:56:51.329 INFO checking bio-0.15.0 against master#142bb27373126edf8367f526358b6c72ecf1d8df for pr-53426 Aug 18 02:56:51.329 INFO running: cargo +142bb27373126edf8367f526358b6c72ecf1d8df-alt check --frozen --all --all-targets Aug 18 02:56:51.329 INFO creating container for: cargo +142bb27373126edf8367f526358b6c72ecf1d8df-alt check --frozen --all --all-targets Aug 18 02:56:51.330 INFO running `"docker" "create" "-v" "/home/ec2-user/crater/./work/local/test-source/worker-4/pr-53426/master#142bb27373126edf8367f526358b6c72ecf1d8df:/source:ro,Z" "-v" "/home/ec2-user/crater/./work/local/target-dirs/pr-53426/worker-4/master#142bb27373126edf8367f526358b6c72ecf1d8df:/target:rw,Z" "-v" "/home/ec2-user/crater/./work/local/cargo-home:/cargo-home:ro,Z" "-v" "/home/ec2-user/crater/./work/local/rustup-home:/rustup-home:ro,Z" "-e" "USER_ID=500" "-e" "CMD=cargo +142bb27373126edf8367f526358b6c72ecf1d8df-alt check --frozen --all --all-targets" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "crater"` Aug 18 02:56:51.550 INFO blam! d08390dbdba4c4aba0554e5f04ec86155a97864a0edabebb212b05fde7bd6ffe Aug 18 02:56:51.552 INFO running `"docker" "start" "-a" "d08390dbdba4c4aba0554e5f04ec86155a97864a0edabebb212b05fde7bd6ffe"` Aug 18 02:56:52.706 INFO kablam! Checking bytecount v0.1.7 Aug 18 02:56:52.731 INFO kablam! Checking csv-core v0.1.4 Aug 18 02:56:55.128 INFO kablam! Checking csv v1.0.0 Aug 18 02:57:00.156 INFO kablam! Checking bio v0.15.0 (file:///source) Aug 18 02:57:03.896 INFO kablam! warning: doc comment not used by rustdoc Aug 18 02:57:03.896 INFO kablam! --> src/stats/pairhmm.rs:44:13 Aug 18 02:57:03.896 INFO kablam! | Aug 18 02:57:03.896 INFO kablam! 44 | /// For global alignment, this has to return 0.0. Aug 18 02:57:03.896 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:03.896 INFO kablam! | Aug 18 02:57:03.896 INFO kablam! = note: #[warn(unused_doc_comments)] on by default Aug 18 02:57:03.896 INFO kablam! Aug 18 02:57:04.036 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:04.037 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:04.037 INFO kablam! | Aug 18 02:57:04.037 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:04.037 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:04.037 INFO kablam! | Aug 18 02:57:04.038 INFO kablam! = note: #[warn(deprecated)] on by default Aug 18 02:57:04.038 INFO kablam! Aug 18 02:57:04.039 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:04.039 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:04.039 INFO kablam! | Aug 18 02:57:04.039 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:04.039 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:04.041 INFO kablam! Aug 18 02:57:04.449 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:04.449 INFO kablam! --> src/data_structures/interval_tree.rs:423:21 Aug 18 02:57:04.449 INFO kablam! | Aug 18 02:57:04.449 INFO kablam! 423 | tree.insert((start..end), name); Aug 18 02:57:04.449 INFO kablam! | ^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.449 INFO kablam! | Aug 18 02:57:04.449 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 18 02:57:04.449 INFO kablam! Aug 18 02:57:04.450 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:04.450 INFO kablam! --> src/data_structures/interval_tree.rs:465:21 Aug 18 02:57:04.450 INFO kablam! | Aug 18 02:57:04.450 INFO kablam! 465 | tree.insert((50..51), "50:51".to_string()); Aug 18 02:57:04.450 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.461 INFO kablam! Aug 18 02:57:04.462 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.462 INFO kablam! --> src/data_structures/interval_tree.rs:466:33 Aug 18 02:57:04.462 INFO kablam! | Aug 18 02:57:04.462 INFO kablam! 466 | assert_not_found(&tree, (49..50)); Aug 18 02:57:04.463 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.463 INFO kablam! Aug 18 02:57:04.464 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.464 INFO kablam! --> src/data_structures/interval_tree.rs:467:37 Aug 18 02:57:04.464 INFO kablam! | Aug 18 02:57:04.464 INFO kablam! 467 | assert_intersections(&tree, (49..55), vec![(50..51)]); Aug 18 02:57:04.464 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.464 INFO kablam! Aug 18 02:57:04.464 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.464 INFO kablam! --> src/data_structures/interval_tree.rs:468:33 Aug 18 02:57:04.464 INFO kablam! | Aug 18 02:57:04.464 INFO kablam! 468 | assert_not_found(&tree, (51..55)); Aug 18 02:57:04.464 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.464 INFO kablam! Aug 18 02:57:04.464 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.464 INFO kablam! --> src/data_structures/interval_tree.rs:469:33 Aug 18 02:57:04.464 INFO kablam! | Aug 18 02:57:04.464 INFO kablam! 469 | assert_not_found(&tree, (52..55)); Aug 18 02:57:04.465 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.465 INFO kablam! Aug 18 02:57:04.466 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.466 INFO kablam! --> src/data_structures/interval_tree.rs:470:33 Aug 18 02:57:04.466 INFO kablam! | Aug 18 02:57:04.466 INFO kablam! 470 | assert_not_found(&tree, (40..45)); Aug 18 02:57:04.466 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.466 INFO kablam! Aug 18 02:57:04.466 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.467 INFO kablam! --> src/data_structures/interval_tree.rs:472:37 Aug 18 02:57:04.467 INFO kablam! | Aug 18 02:57:04.467 INFO kablam! 472 | assert_intersections(&tree, (80..83), vec![(80..81)]); Aug 18 02:57:04.467 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.467 INFO kablam! Aug 18 02:57:04.467 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.467 INFO kablam! --> src/data_structures/interval_tree.rs:473:37 Aug 18 02:57:04.467 INFO kablam! | Aug 18 02:57:04.467 INFO kablam! 473 | assert_intersections(&tree, (1..100), vec![(50..51), (80..81)]); Aug 18 02:57:04.467 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.467 INFO kablam! Aug 18 02:57:04.468 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.468 INFO kablam! --> src/data_structures/interval_tree.rs:474:33 Aug 18 02:57:04.468 INFO kablam! | Aug 18 02:57:04.468 INFO kablam! 474 | assert_not_found(&tree, (82..83)); Aug 18 02:57:04.468 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.468 INFO kablam! Aug 18 02:57:04.468 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.468 INFO kablam! --> src/data_structures/interval_tree.rs:476:37 Aug 18 02:57:04.468 INFO kablam! | Aug 18 02:57:04.468 INFO kablam! 476 | assert_intersections(&tree, (25..33), vec![(30..35)]); Aug 18 02:57:04.468 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.468 INFO kablam! Aug 18 02:57:04.469 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.470 INFO kablam! --> src/data_structures/interval_tree.rs:477:37 Aug 18 02:57:04.470 INFO kablam! | Aug 18 02:57:04.470 INFO kablam! 477 | assert_intersections(&tree, (1..100), vec![(30..35), (50..51), (80..81)]); Aug 18 02:57:04.470 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.470 INFO kablam! Aug 18 02:57:04.472 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.472 INFO kablam! --> src/data_structures/interval_tree.rs:478:33 Aug 18 02:57:04.472 INFO kablam! | Aug 18 02:57:04.472 INFO kablam! 478 | assert_not_found(&tree, (42..43)); Aug 18 02:57:04.472 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.472 INFO kablam! Aug 18 02:57:04.472 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.472 INFO kablam! --> src/data_structures/interval_tree.rs:479:33 Aug 18 02:57:04.472 INFO kablam! | Aug 18 02:57:04.472 INFO kablam! 479 | assert_not_found(&tree, (35..36)); Aug 18 02:57:04.472 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.472 INFO kablam! Aug 18 02:57:04.472 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.472 INFO kablam! --> src/data_structures/interval_tree.rs:480:33 Aug 18 02:57:04.472 INFO kablam! | Aug 18 02:57:04.472 INFO kablam! 480 | assert_not_found(&tree, (22..29)); Aug 18 02:57:04.472 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.473 INFO kablam! Aug 18 02:57:04.473 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.473 INFO kablam! --> src/data_structures/interval_tree.rs:482:37 Aug 18 02:57:04.473 INFO kablam! | Aug 18 02:57:04.473 INFO kablam! 482 | assert_intersections(&tree, (75..79), vec![(70..77)]); Aug 18 02:57:04.473 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.473 INFO kablam! Aug 18 02:57:04.473 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.473 INFO kablam! --> src/data_structures/interval_tree.rs:484:30 Aug 18 02:57:04.473 INFO kablam! | Aug 18 02:57:04.473 INFO kablam! 484 | (1..100), Aug 18 02:57:04.473 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.474 INFO kablam! Aug 18 02:57:04.474 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.474 INFO kablam! --> src/data_structures/interval_tree.rs:486:33 Aug 18 02:57:04.475 INFO kablam! | Aug 18 02:57:04.475 INFO kablam! 486 | assert_not_found(&tree, (62..68)); Aug 18 02:57:04.475 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.475 INFO kablam! Aug 18 02:57:04.475 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.475 INFO kablam! --> src/data_structures/interval_tree.rs:487:37 Aug 18 02:57:04.475 INFO kablam! | Aug 18 02:57:04.475 INFO kablam! 487 | assert_intersections(&tree, (75..77), vec![(70..77)]); Aug 18 02:57:04.475 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.475 INFO kablam! Aug 18 02:57:04.475 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.475 INFO kablam! --> src/data_structures/interval_tree.rs:488:33 Aug 18 02:57:04.475 INFO kablam! | Aug 18 02:57:04.475 INFO kablam! 488 | assert_not_found(&tree, (78..79)); Aug 18 02:57:04.475 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.475 INFO kablam! Aug 18 02:57:04.475 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.475 INFO kablam! --> src/data_structures/interval_tree.rs:489:37 Aug 18 02:57:04.475 INFO kablam! | Aug 18 02:57:04.475 INFO kablam! 489 | assert_intersections(&tree, (49..51), vec![(50..51)]); Aug 18 02:57:04.475 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.478 INFO kablam! Aug 18 02:57:04.478 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.478 INFO kablam! --> src/data_structures/interval_tree.rs:490:37 Aug 18 02:57:04.478 INFO kablam! | Aug 18 02:57:04.478 INFO kablam! 490 | assert_intersections(&tree, (49..55), vec![(50..51)]); Aug 18 02:57:04.478 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.478 INFO kablam! Aug 18 02:57:04.478 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.478 INFO kablam! --> src/data_structures/interval_tree.rs:491:33 Aug 18 02:57:04.478 INFO kablam! | Aug 18 02:57:04.478 INFO kablam! 491 | assert_not_found(&tree, (51..55)); Aug 18 02:57:04.478 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.478 INFO kablam! Aug 18 02:57:04.478 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.478 INFO kablam! --> src/data_structures/interval_tree.rs:492:33 Aug 18 02:57:04.479 INFO kablam! | Aug 18 02:57:04.479 INFO kablam! 492 | assert_not_found(&tree, (52..55)); Aug 18 02:57:04.479 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.479 INFO kablam! Aug 18 02:57:04.479 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.479 INFO kablam! --> src/data_structures/interval_tree.rs:493:33 Aug 18 02:57:04.479 INFO kablam! | Aug 18 02:57:04.479 INFO kablam! 493 | assert_not_found(&tree, (40..45)); Aug 18 02:57:04.479 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.479 INFO kablam! Aug 18 02:57:04.479 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.479 INFO kablam! --> src/data_structures/interval_tree.rs:503:33 Aug 18 02:57:04.479 INFO kablam! | Aug 18 02:57:04.479 INFO kablam! 503 | assert_not_found(&tree, (112..113)); Aug 18 02:57:04.479 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.479 INFO kablam! Aug 18 02:57:04.479 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.479 INFO kablam! --> src/data_structures/interval_tree.rs:504:33 Aug 18 02:57:04.479 INFO kablam! | Aug 18 02:57:04.479 INFO kablam! 504 | assert_not_found(&tree, (108..109)); Aug 18 02:57:04.479 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.479 INFO kablam! Aug 18 02:57:04.479 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.479 INFO kablam! --> src/data_structures/interval_tree.rs:505:37 Aug 18 02:57:04.479 INFO kablam! | Aug 18 02:57:04.479 INFO kablam! 505 | assert_intersections(&tree, (106..108), vec![(107..108)]); Aug 18 02:57:04.479 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.479 INFO kablam! Aug 18 02:57:04.479 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.479 INFO kablam! --> src/data_structures/interval_tree.rs:507:30 Aug 18 02:57:04.480 INFO kablam! | Aug 18 02:57:04.480 INFO kablam! 507 | (1..100), Aug 18 02:57:04.480 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.480 INFO kablam! Aug 18 02:57:04.480 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.480 INFO kablam! --> src/data_structures/interval_tree.rs:510:30 Aug 18 02:57:04.480 INFO kablam! | Aug 18 02:57:04.480 INFO kablam! 510 | (1..101), Aug 18 02:57:04.480 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.480 INFO kablam! Aug 18 02:57:04.480 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.480 INFO kablam! --> src/data_structures/interval_tree.rs:513:30 Aug 18 02:57:04.480 INFO kablam! | Aug 18 02:57:04.480 INFO kablam! 513 | (1..102), Aug 18 02:57:04.480 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.480 INFO kablam! Aug 18 02:57:04.480 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.480 INFO kablam! --> src/data_structures/interval_tree.rs:516:30 Aug 18 02:57:04.480 INFO kablam! | Aug 18 02:57:04.480 INFO kablam! 516 | (100..200), Aug 18 02:57:04.480 INFO kablam! | ^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.480 INFO kablam! Aug 18 02:57:04.480 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.480 INFO kablam! --> src/data_structures/interval_tree.rs:543:41 Aug 18 02:57:04.480 INFO kablam! | Aug 18 02:57:04.480 INFO kablam! 543 | assert_intersections(&tree, (lower_bound..upper_bound), expected_intersections); Aug 18 02:57:04.480 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.480 INFO kablam! Aug 18 02:57:04.480 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:04.481 INFO kablam! --> src/data_structures/interval_tree.rs:550:21 Aug 18 02:57:04.481 INFO kablam! | Aug 18 02:57:04.481 INFO kablam! 550 | tree.insert((10..10), "10:10".to_string()); Aug 18 02:57:04.481 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.481 INFO kablam! Aug 18 02:57:04.481 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.482 INFO kablam! --> src/data_structures/interval_tree.rs:552:33 Aug 18 02:57:04.482 INFO kablam! | Aug 18 02:57:04.482 INFO kablam! 552 | assert_not_found(&tree, (5..15)); Aug 18 02:57:04.482 INFO kablam! | ^^^^^^^ help: remove these parentheses Aug 18 02:57:04.482 INFO kablam! Aug 18 02:57:04.482 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.482 INFO kablam! --> src/data_structures/interval_tree.rs:553:33 Aug 18 02:57:04.482 INFO kablam! | Aug 18 02:57:04.482 INFO kablam! 553 | assert_not_found(&tree, (10..10)); Aug 18 02:57:04.482 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.482 INFO kablam! Aug 18 02:57:04.482 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:04.482 INFO kablam! --> src/data_structures/interval_tree.rs:556:33 Aug 18 02:57:04.482 INFO kablam! | Aug 18 02:57:04.482 INFO kablam! 556 | assert_not_found(&tree, (55..55)); Aug 18 02:57:04.482 INFO kablam! | ^^^^^^^^ help: remove these parentheses Aug 18 02:57:04.482 INFO kablam! Aug 18 02:57:04.509 INFO kablam! warning: doc comment not used by rustdoc Aug 18 02:57:04.509 INFO kablam! --> src/stats/pairhmm.rs:44:13 Aug 18 02:57:04.509 INFO kablam! | Aug 18 02:57:04.509 INFO kablam! 44 | /// For global alignment, this has to return 0.0. Aug 18 02:57:04.509 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:04.510 INFO kablam! | Aug 18 02:57:04.510 INFO kablam! = note: #[warn(unused_doc_comments)] on by default Aug 18 02:57:04.510 INFO kablam! Aug 18 02:57:04.729 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:04.729 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:04.729 INFO kablam! | Aug 18 02:57:04.729 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:04.729 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:04.730 INFO kablam! | Aug 18 02:57:04.730 INFO kablam! = note: #[warn(deprecated)] on by default Aug 18 02:57:04.730 INFO kablam! Aug 18 02:57:04.731 INFO kablam! warning: use of deprecated item 'std::ascii::AsciiExt': use inherent methods instead Aug 18 02:57:04.731 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:04.731 INFO kablam! | Aug 18 02:57:04.731 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:04.731 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:04.731 INFO kablam! Aug 18 02:57:10.279 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:10.279 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:10.279 INFO kablam! | Aug 18 02:57:10.279 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:10.279 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:10.279 INFO kablam! | Aug 18 02:57:10.279 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 18 02:57:10.279 INFO kablam! Aug 18 02:57:10.279 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:10.279 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:10.279 INFO kablam! | Aug 18 02:57:10.279 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:10.279 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:10.290 INFO kablam! Aug 18 02:57:13.322 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:13.322 INFO kablam! --> src/data_structures/interval_tree.rs:293:21 Aug 18 02:57:13.322 INFO kablam! | Aug 18 02:57:13.322 INFO kablam! 293 | let mut right = self.right Aug 18 02:57:13.323 INFO kablam! | ----^^^^^ Aug 18 02:57:13.323 INFO kablam! | | Aug 18 02:57:13.323 INFO kablam! | help: remove this `mut` Aug 18 02:57:13.323 INFO kablam! | Aug 18 02:57:13.323 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 18 02:57:13.324 INFO kablam! Aug 18 02:57:13.324 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:13.324 INFO kablam! --> src/data_structures/interval_tree.rs:305:21 Aug 18 02:57:13.324 INFO kablam! | Aug 18 02:57:13.324 INFO kablam! 305 | let mut left = self.left Aug 18 02:57:13.324 INFO kablam! | ----^^^^ Aug 18 02:57:13.324 INFO kablam! | | Aug 18 02:57:13.324 INFO kablam! | help: remove this `mut` Aug 18 02:57:13.324 INFO kablam! Aug 18 02:57:16.775 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:16.775 INFO kablam! --> src/io/fastq.rs:18:5 Aug 18 02:57:16.775 INFO kablam! | Aug 18 02:57:16.775 INFO kablam! 18 | use std::ascii::AsciiExt; Aug 18 02:57:16.775 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:16.794 INFO kablam! | Aug 18 02:57:16.795 INFO kablam! = note: #[warn(unused_imports)] on by default Aug 18 02:57:16.795 INFO kablam! Aug 18 02:57:16.795 INFO kablam! warning: unused import: `std::ascii::AsciiExt` Aug 18 02:57:16.795 INFO kablam! --> src/io/fasta.rs:20:5 Aug 18 02:57:16.795 INFO kablam! | Aug 18 02:57:16.795 INFO kablam! 20 | use std::ascii::AsciiExt; Aug 18 02:57:16.795 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:16.795 INFO kablam! Aug 18 02:57:22.884 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:22.885 INFO kablam! --> benches/interval_tree.rs:17:64 Aug 18 02:57:22.885 INFO kablam! | Aug 18 02:57:22.885 INFO kablam! 17 | b.iter(|| test_insert_query(10, &(100_000..200_000), 1000, (105_000..106_000))); Aug 18 02:57:22.885 INFO kablam! | ^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:22.926 INFO kablam! | Aug 18 02:57:22.930 INFO kablam! = note: #[warn(unused_parens)] on by default Aug 18 02:57:22.931 INFO kablam! Aug 18 02:57:22.931 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:22.931 INFO kablam! --> benches/interval_tree.rs:24:62 Aug 18 02:57:22.931 INFO kablam! | Aug 18 02:57:22.931 INFO kablam! 24 | b.iter(|| test_insert_query(10, &(100_000..200_000), 10, (99_995..199_995))); Aug 18 02:57:22.931 INFO kablam! | ^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:22.932 INFO kablam! Aug 18 02:57:22.933 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:22.933 INFO kablam! --> benches/interval_tree.rs:35:21 Aug 18 02:57:22.933 INFO kablam! | Aug 18 02:57:22.933 INFO kablam! 35 | tree.insert((i..i + insert_size), (i..i + insert_size)); Aug 18 02:57:22.933 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:22.933 INFO kablam! Aug 18 02:57:22.934 INFO kablam! warning: unnecessary parentheses around method argument Aug 18 02:57:22.934 INFO kablam! --> benches/interval_tree.rs:35:43 Aug 18 02:57:22.934 INFO kablam! | Aug 18 02:57:22.934 INFO kablam! 35 | tree.insert((i..i + insert_size), (i..i + insert_size)); Aug 18 02:57:22.934 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:22.934 INFO kablam! Aug 18 02:57:22.935 INFO kablam! warning: unnecessary parentheses around function argument Aug 18 02:57:22.935 INFO kablam! --> benches/interval_tree.rs:46:37 Aug 18 02:57:22.935 INFO kablam! | Aug 18 02:57:22.935 INFO kablam! 46 | assert_intersections(&tree, (lower_bound..upper_bound), &expected_intersections); Aug 18 02:57:22.935 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses Aug 18 02:57:22.936 INFO kablam! Aug 18 02:57:27.417 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:27.417 INFO kablam! --> benches/pattern_matching.rs:231:16 Aug 18 02:57:27.417 INFO kablam! | Aug 18 02:57:27.417 INFO kablam! 231 | shiftand.find_all(TEXT.iter()).collect::>(); Aug 18 02:57:27.417 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.417 INFO kablam! | Aug 18 02:57:27.417 INFO kablam! = note: #[warn(unused_must_use)] on by default Aug 18 02:57:27.417 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:27.418 INFO kablam! Aug 18 02:57:27.418 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:27.418 INFO kablam! --> benches/pattern_matching.rs:239:16 Aug 18 02:57:27.418 INFO kablam! | Aug 18 02:57:27.418 INFO kablam! 239 | bndm.find_all(TEXT).collect::>(); Aug 18 02:57:27.418 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.418 INFO kablam! | Aug 18 02:57:27.418 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:27.419 INFO kablam! Aug 18 02:57:27.419 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:27.419 INFO kablam! --> benches/pattern_matching.rs:247:16 Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! 247 | bom.find_all(TEXT).collect::>(); Aug 18 02:57:27.419 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:27.419 INFO kablam! Aug 18 02:57:27.419 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:27.419 INFO kablam! --> benches/pattern_matching.rs:255:16 Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! 255 | horspool.find_all(TEXT).collect::>(); Aug 18 02:57:27.419 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:27.419 INFO kablam! Aug 18 02:57:27.419 INFO kablam! warning: unused return value of `std::iter::Iterator::collect` which must be used Aug 18 02:57:27.419 INFO kablam! --> benches/pattern_matching.rs:263:16 Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! 263 | kmp.find_all(TEXT.iter()).collect::>(); Aug 18 02:57:27.419 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:27.419 INFO kablam! | Aug 18 02:57:27.419 INFO kablam! = note: if you really need to exhaust the iterator, consider `.for_each(drop)` instead Aug 18 02:57:27.419 INFO kablam! Aug 18 02:57:27.965 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:27.965 INFO kablam! --> src/data_structures/interval_tree.rs:293:21 Aug 18 02:57:27.965 INFO kablam! | Aug 18 02:57:27.965 INFO kablam! 293 | let mut right = self.right Aug 18 02:57:27.965 INFO kablam! | ----^^^^^ Aug 18 02:57:27.965 INFO kablam! | | Aug 18 02:57:27.965 INFO kablam! | help: remove this `mut` Aug 18 02:57:27.965 INFO kablam! | Aug 18 02:57:27.965 INFO kablam! = note: #[warn(unused_mut)] on by default Aug 18 02:57:27.965 INFO kablam! Aug 18 02:57:27.965 INFO kablam! warning: variable does not need to be mutable Aug 18 02:57:27.966 INFO kablam! --> src/data_structures/interval_tree.rs:305:21 Aug 18 02:57:27.966 INFO kablam! | Aug 18 02:57:27.966 INFO kablam! 305 | let mut left = self.left Aug 18 02:57:27.966 INFO kablam! | ----^^^^ Aug 18 02:57:27.966 INFO kablam! | | Aug 18 02:57:27.966 INFO kablam! | help: remove this `mut` Aug 18 02:57:27.966 INFO kablam! Aug 18 02:57:29.714 INFO kablam! warning: function is never used: `prob_emit_xy` Aug 18 02:57:29.714 INFO kablam! --> src/stats/pairhmm.rs:227:5 Aug 18 02:57:29.714 INFO kablam! | Aug 18 02:57:29.714 INFO kablam! 227 | fn prob_emit_xy(x: &[u8], y: &[u8], i: usize, j: usize) -> LogProb { Aug 18 02:57:29.714 INFO kablam! | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Aug 18 02:57:29.714 INFO kablam! | Aug 18 02:57:29.714 INFO kablam! = note: #[warn(dead_code)] on by default Aug 18 02:57:29.714 INFO kablam! Aug 18 02:57:30.213 INFO kablam! Finished dev [unoptimized + debuginfo] target(s) in 37.80s Aug 18 02:57:30.243 INFO kablam! su: No module specific data is present Aug 18 02:57:30.918 INFO running `"docker" "rm" "-f" "d08390dbdba4c4aba0554e5f04ec86155a97864a0edabebb212b05fde7bd6ffe"` Aug 18 02:57:31.100 INFO blam! d08390dbdba4c4aba0554e5f04ec86155a97864a0edabebb212b05fde7bd6ffe